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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0231500 |
| Transcript ID | LotjaGi5g1v0231500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor, putative; TAIR: AT1G09250.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|O80482|BH149_ARATH Transcription factor bHLH149; TrEMBL-Plants: tr|I3T7S8|I3T7S8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0231500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53887505..53890326) extracted from Lotus japonicus Gifu genome v1.2.
GTAGGCGATTAAGATTGAATCAATAGATATACATATGGTTAACAAAAATTAGAAGTAATATAGGAGTAATTCTTTATTTG AGAACTACCCAAAAAATGTAATTCATTAATGGAAAGAGAGAGCCATAAATGTGAAGGACGCGTGGTTTCTCGTGACTCGA AACTCAACTCCACCCTTCCCTTTTAAACTCTCTCTTTCTCTTCTTTCTCCTTCCAAACCTTCACTTCGCACTCTTCTTCT TCGATTCAAATCTCTCTCATCTCATCTCATCTCATCTCATCAATCAACAAACACCTCAATCTCTCTCTCTCTCTCTCTCT ATTCCCATGGATTCTCTTCAACCAAACACGATAACAGATTCCGAAACCTCCCCTGATTCCAATCACAAAAAACGCCGCAA AATCACCCACCCTCAAAACCCCCTCAATCTCATGCCCTGGCGATCCAACGCCGACCAGCAGATCTACTCCCTCCGCCTCG CCAACGCCCTCCGCCGCATCCCCAGACCCGCCGCGCAAATCCGCGACACCGCCGACCGCGTCCTCGCCGCCACCGCCAAA GGCAGGACGCGTTGGAGCCGCGCGATTCTCACCCGCCGGAAGAAGCTCCGCATCAAGAAGGTCAAGCGAGCCGCCTCCGG ATTGAGAAGAGCGGCGATCGGGAGGAGGAAGCGGTTACCGGCTGTGCAGAAGAAAGCGCGCGTTCTCGGCCGGTTGGTTC CTGGTTGTCGGAAGGTGTCGTTCCCGAACCTTCTGGAAGAAGCCACCGACTATATCTCCGCCTTGGAGATGCAGGTTCGA GCCATGGCTGCTCTCGCTGAGCTTCTCTCCGGTGGCGCGCCGGCGGCTCATGTGTTGACTTGACCCGTACGACGTCGTTT TACAGCCTTGGCTATATTGCGCCAGGTGTTACCTGCTTTTTTTTTTATTATTATTATAATATCTTTTGTATTTGTGTTCA GATTCTTCATGTATTTTATTATCGTGTACACTGTACATGCCATTTGCTTATTCATCCTCACTTTAATCTCCACTATCTCT ACCTTTTCTATTTAATCATTTTTTAGTTAATTCATTGTGAACATGCTACCCACTTTGATTCTTTTCTTAACCACTTTCTC CAAATGTTAATTTATAATAAAACAAGGGTGTTATTGTGGGTTCTCACAAGTCATAAGATAAAAATTGTATGAAATAATTT TTTTTTTTGTCTTGACCAAGGTATCTCCACCAGTACAGCTGTTTTGGCGAGGGAAAACGGCTAATGTTGGGTTTTAGTTT AAAAGTTTTTATCAAATATGTGATTCGTTGCGGTGATACATGCTTAATGTCTCGCGGTCGAGTATGGATGGAAAAAACTT CTACCCGTGCTTAACTCCTCTAAGTAAAGTCTTAAGTTTCGAATGTCTTAAGATTTGAGTTTTATGGATGGAAAAAACTT GACGAAAAAATTAATTATACCATATGAATGTTTTTAACTTGAATCTTTAAGTGTAAAAAAAGTAACAACCTATTCTTCTT TCTCATCCCTTTACTGTAGCAATTTATTGTCATTTTCTGCTTTCTATATATCGTTTGAGTTTGAACTTCTATGTTATCAA TGTTTTATACCTTTTATTATCACCAAAGATTTTGATAATAACATTACACTTTCTCGGGATTTGTAACTGAGATAGTAGTA ATTGGAATGAACGTTCTGTGTCTAGTAGAGATTAGTAGGAGTATTGCATTCATTATTTCTTTTGTCAAAGCTCCCTCATT GCTCATTAAAAATAAAAAAAGAGGGCCACTAACGGGCCCAAATACACATGTTTCCAAACACCATAAGGTTAGGCCTGCTA GAGGTAGAAAAGACAATGAGGCAGACACAATTTTATTGGAAACGGATATAAAGCTTTATCTAAGGCAAGTACACAATCTA TCTAGGTAACTTAGGTGAAGATCTAGGGTAAAAGGGACAAGAAAGAATGGGGAGCCATCTTGTCTAGGTCATCAATAAGC TTCGCCAGGAGAGAACCGTTGATCATTCCACTCACTAGAGGAAGGGGAACTTCAAGAGGGTCGATCTTAGTGCTGGATCT GCCCTATCTTCTCCTCTTAGAGGACTTCGGAGCTCAGAATCCTGACTAAGTCCATTAGAGGCACGATGGCCCAGTTAATG AGGAGGAGGCCTCTTTGGAAGATGTTCGCAACTTTGTGAGTGGCCTTGTTTCCCTTGCGAGGAGTTTGTGTGAAGCCACA ATGATCAAAACATCACCATAGAGGAAGCTTTAACAAACAACAGGGAGTCCTAAGTAAAGAAGACATGGGTAAGGATGGAG GATGGAGGATGAATCATCCGATTCGATTCCTTTAATAGATCCTGAAGCTTGGCCCTTGGACAATATATAAGAAAGAATAT TTGTGACTAAGACAAATAGGTAAGGGGGTAGAGGGTCCCTGATGTGATTCTCCACACAATTAGCATCTTTTCTTGGAATT CTCACTCAAGCCTATCATAAGCCTTGCTCATATACAACTTCACATCAATTTGGTATTGGAGTCTCATTGTTTTTAAAGGG AGTAGAAAACCTCATGTGCTATGGGGCGACAATGGAGCACACTATCGGGTACTTGATTCTTGAAATCCTCCATGAGGGGG CTCCTCCCTCCTCATTGAGGCTCTTTCCTCTATGTGAGCTTGTTTATCTCCCTATGTGGGATACTTTTCTACCCTATTTG AGTTCTTTCCTCTCCTATGTGAAACCTTTTCTATCCCATTTGTGGAGAAAAGCCAAACTTGGGGAACACATCCTCAACCC ATATAACATCAGAGAAATTAAA
CDS sequence (LotjaGi5g1v0231500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCTCTTCAACCAAACACGATAACAGATTCCGAAACCTCCCCTGATTCCAATCACAAAAAACGCCGCAAAATCAC CCACCCTCAAAACCCCCTCAATCTCATGCCCTGGCGATCCAACGCCGACCAGCAGATCTACTCCCTCCGCCTCGCCAACG CCCTCCGCCGCATCCCCAGACCCGCCGCGCAAATCCGCGACACCGCCGACCGCGTCCTCGCCGCCACCGCCAAAGGCAGG ACGCGTTGGAGCCGCGCGATTCTCACCCGCCGGAAGAAGCTCCGCATCAAGAAGGTCAAGCGAGCCGCCTCCGGATTGAG AAGAGCGGCGATCGGGAGGAGGAAGCGGTTACCGGCTGTGCAGAAGAAAGCGCGCGTTCTCGGCCGGTTGGTTCCTGGTT GTCGGAAGGTGTCGTTCCCGAACCTTCTGGAAGAAGCCACCGACTATATCTCCGCCTTGGAGATGCAGGTTCGAGCCATG GCTGCTCTCGCTGAGCTTCTCTCCGGTGGCGCGCCGGCGGCTCATGTGTTGACTTGA
Protein sequence (LotjaGi5g1v0231500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSLQPNTITDSETSPDSNHKKRRKITHPQNPLNLMPWRSNADQQIYSLRLANALRRIPRPAAQIRDTADRVLAATAKGR TRWSRAILTRRKKLRIKKVKRAASGLRRAAIGRRKRLPAVQKKARVLGRLVPGCRKVSFPNLLEEATDYISALEMQVRAM AALAELLSGGAPAAHVLT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 37 | 37 | - | – | |
| PANTHER | 12 | 174 | 163 | 5.1E-69 | – | |
| PANTHER | 12 | 174 | 163 | 5.1E-69 | – | |
| ProSiteProfiles | 104 | 153 | 50 | 9.426 | ||
| SUPERFAMILY | 114 | 170 | 57 | 1.83E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi5g1v0231500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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