Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0232300 |
| Transcript ID | LotjaGi5g1v0232300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Golgi apparatus membrane protein TVP23; TAIR: AT1G09330.1 golgi apparatus membrane protein-like protein ECHIDNA protein; Swiss-Prot: sp|Q8LEK2|TVP23_ARATH Golgi apparatus membrane protein-like protein ECHIDNA; TrEMBL-Plants: tr|I3T6A2|I3T6A2_LOTJA Golgi apparatus membrane protein TVP23; Found in the gene: LotjaGi5g1v0232300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53979498..53983788) extracted from Lotus japonicus Gifu genome v1.2.
CCTTGGGCTTTTTACCTTCAGATTGTTTTTTTCTTCTTGGCCCAGTACAGCCCAGAACTTGCATTTCTTCAACAACTCGA GGAACAGTTAATGGAATTTCACTCCCACATCAAATTATATTTCTAACATAATTTGGATCGCTACTGTTATGCTCCATCCT CTGTGATTTCTCTTCTCGCAATCTTCACATGGATCCCAACCAGGTAACTCACCTTCTTCTTCTTCTTCTTCTTCTTCTTC TTCTTCATCTTCGCTTTTCTGCATAAAATAAATCTCAGATCTGGTTTCCATCTTCGTTGAATTTTCATTCCTCCGCACAT TCCTTCATAGAATCGTCATATTTCTTCGATTCGAATACTCATGCTATTGTTTCGTTATAGATTTATGAAATTAGCTAATT GAATTGAATTGATTGAATCTTCCTCCGTTTGCAGCAAGTAGTAGAAAACTACGCGAATCCAAGGACTTGCTTCTTCCATG TCCTCTTCAAGGTTTACTCTATCATCCAATTGTGCTCTTTCAATGAATATGTGGTGTTCATGTTTGTAAAGGGGTTATGT TTTTGTGTATTGCAGGCTGCATCGTTGGCATTTTACATTCTCTCAACGCTCTTTATTGCTAACTTTGTCATCATCTTCGT GGTCACCGTGCTTCTCGCGGCGCTTGATTTTTGGGTGGTTAAGAATGTGAGTGGCCGGATTTTAGTTGGGTTGAGGTGGT GGAATGAAATCAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCAAGAGGTAGGTGGTAATGGTATTAGT CCTTCAATAGCATCAGAATGGGTTTCAAATTCCTTTGTTGGATACTTGCTCTGATCTTACATGTATTGATTGATTTGTCT TTCTTTCCAGTCATTGGCTCGGATGAATAAAAAGGACTCGTGGCTTTTCTGGTGGACCCTTTACCTTACGGTAAGAGAAT ATGGATTGATTACAGCATGCAATGACATTCCAGTTTTCATTTAGGTTCTTCTAGTGCAAGAGTTGAAATGTGGGTTTTGG GGAGAGTCAATAAGGGGGAAATTATGGCCTGATCAGACTTATTCAGATGGTGCATCTGTTGTGTAGGAGTAAATTATTGT TACGTCTATGATCCATGTGGTCAAGATTCAACAAGATTTTACATTAGATATCGGCCACCTAACACAACTCTACTCTTTTC TCTGGGCTTGGAGCCGGTTATTTAATGGATATAGGCAGAGCAATGATATTGCTTAGTACGTAGTAGTAAATAGTACACTA ATTGGTTGTAATGTTCAAAATAAGTGATAAGTTCTCTACAGGTTTTGGATTTGCATGGAGAACAATGGTTAATGAAATAA CATGGCACAGTTATTTCACTGCTTGTAGGTTAGATACCACCCCCACACTTGTCTTAAAAAAAGCATAATCATTATTCTTT GGTACTACAGGCAATTTTATGGATCCTGCTTGGAATATTCTCGCTCATAAGGCTTCAAGCTGATTATCTCCTTGTTGTTG GAGTTTGTTTGACACTCAGCATTGCAAATATTGTTGGTTTTACCAAATGCAAAAAAGGTGCGCAACTTTATTGATGATAT TCTTAAAAATTAAACCATGTATATTCTGATATGCAAAATTGGTTTGGGTGTAGCATTTCATATTGGAGTTTTGGAAACAT TGTGTAGCACCTGTTTCTCATATCATTTTGAATGCAAACTATAATTTGTTGTATTCTGCCCACCATAGTAGTCAATCCCG GATAGCGGCGCGTAGCGGCCGGCCCCAAAAGTGGGATAGCGTGATAGCGCATAGCGGGATGGCCGCTATTCTGAATTTTT TTATGTAATTTTATATCATTAATAGTTTAATACTAAATACATATAAATAGCAAACAATGTCAAATATTGCCTAAAATTCA TAACATTCATAATAGAAATAAAAATCATAAGTCTTGAACAATAACACACAACTAATAACTTCTCAAAAGCAAGGTAAAGA AGTCGAATTTGCAAATCTGAATGAAGAATGAAGCTTAATTCTTTCAATTTTGACCTATAATGGCCCTGAGAAGTCCTAAC ATGCCCATAAAAAGGTTCCCCAACGATTTAAAACGAAGGGGCTTGAGTCATTTTCTCCTTCGTTCATATAGCGCCGCTAT TTCCCGCTATTGGCCGCGATCTGCCGCTATTTTGGCCGCTATTCGCGCCGCTATGACCGCTATTGTGAAGTTGGCCGCTA TTTCATCTCAATAGCGGCAGGGAGCCGCTCCGCTACGCCGCTATAGCGCCGCTATTTGCCGCTATTGACTACTATGCTGC CCACTTAATGTAAAGTTGTAGGCATATGAAGATACTGACTACTAAATAAGGGGTTTAGAGTTCATTGTGTAAGTGAAATG GCAGTTTATGATTTTATTTGTCAATTCCTGTGTGGCAAAGGATTCTATGAGGCCTCAGCACGAGCAATTATATCACTGAA GCTTAATATCTTATGTTAGGCCATGATCTTATTCTTAGGTTCCTAGGTGCTTTGGAGGCTAATATATTGTATACCAATGT AGGATCCTGTGATCGTTGATTCTTTGTTCCTGCATTCTTGTATTTGTGCCTGCAACACATCCATTGGGCTTAAGTCGGTG AACATTTGTCTTTATGAAAACCATAAGGATATCCTCAATTTATACTCCCACCAAATTGGAAGTTATTATTGATATTCCTG TTGTTATAGTAGTAGTAGAAATAGTTTTGGTGGAATTGGTTAAGTAACAAGAGAAGAGACATTATATGAAAATGTAAATG GTTTGCTGAAGGGTCAACTGGTTAGAGATTCCCAAATATCAATTTAGTTTTAGACCGGTTACCGTGTATTATCAATAGTT GGTTAGAACAATTAGTTTGTGAGAGAGGTTGGAAATGACAGGCGATTTAGCTTAATATGAGTATGGATAGAAGGGAAAGG ATGTTGCTAGTTTTTTAACAGAGCAGTGGCTCAGTTATAGAAGGAGAAAGGAGAGATTTTGCTCCTACTCTGTTTATTTT TCAGTTATACAAAAAATGAATAAACTCATTATTTGCTCTATACCCATTGTGGTTTTCTAATACAACTCCTTGCAGTAGGC CAGTAGCACCCTGTTTTTGTGAGATTGGGAACTTTGGGACATCTTTTTTTTTGTTTGTCTTATTAATATTTTCTTCATTG CATCTTGTCTAATTGATCCTGCAATATATGTGAAACGTACATGTAGGAGTTTCCTAAGCTCATAACATCTTGAGACTAGT ATTTCTACATAACAGGAAGGATTTCCCTTTGTCCCCCACATGATTTACCATTTCATCTTAACATGCTTTTCAATGGAAAA GCTTGCATTGGCTAAAACTGTTTGGTTGTTTTTCAGATGCTAAGAAGCAACTTCAACAATTTGCCTCTCAGACAATTGCC ACTCGGTTCTCATCTACCCTACAGTCAGCATTCAGTGTCGTCTAAGATGGAAATGCACATGTGCATTATTGGAAATATTG AGATGTGGTGGAGGTTTGTACATGATGATTATTTTGGCCAGCATCGGATTGAATTCTGACTACCTATCAAATTTGCATAG TTACTGATACAGCAAATGCAAAATTTTGTACTCTCTTTACAAGAAATGGGTTGAGTGAGACTTCGATAAACAAATTACTT AGTAAAACTGTTATTTTTAGGTGTACATCGTTTTTCTTGTATTCTTTTGCGTTGGTGTTCTATGATTTATATTCTGTATG GACTAAAATATTGACTCATGAAAATTGGTGGATAATATAAATCACGATGTTGTATCATCCTAGAAGACGGGGGCACACTC ATCTCACTGATGACTGACCAAAATATATACAACCGCAAATGCCTTATCGATTATGAGATCGCATTTAATAATATCCTTTA TAACCAATTTGTAATAGTGGAGAGATGCCTCGTACATTTAGAGGAAGCTTTAAAATACATTGCATTCGAGCTAAAGGAAA AAGCGAAATCTATGAATGGAGCTATTTTCACAGACTAGAACTGACTGATCCTTACCTTATGCTTTCTACTGCACCAAGAC CAACTACAACAACGATAAAGTGGTGAGGGAGGTACCATGGAGGCCGGGAGAAGAAGGCATGAAATGGAGAAGGGAGGCAC CCTATGCTGGAAGAGAAGTGGAGAAGGGAGGCACCACATATTGGGAGTGAAAAGAACATACATGAGAAAACGAAGGAACA AGCAAATGAAAACTCGATTGCTGGAGAAGAATACACGGAGGGGGAAAGAGG
CDS sequence (LotjaGi5g1v0232300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCCAACCAGCAAGTAGTAGAAAACTACGCGAATCCAAGGACTTGCTTCTTCCATGTCCTCTTCAAGGCTGCATC GTTGGCATTTTACATTCTCTCAACGCTCTTTATTGCTAACTTTGTCATCATCTTCGTGGTCACCGTGCTTCTCGCGGCGC TTGATTTTTGGGTGGTTAAGAATGTGAGTGGCCGGATTTTAGTTGGGTTGAGGTGGTGGAATGAAATCAATGATCTGGGT GAGAGTGTTTGGAAATTTGAATGTCTTGACCAAGAGTCATTGGCTCGGATGAATAAAAAGGACTCGTGGCTTTTCTGGTG GACCCTTTACCTTACGGCAATTTTATGGATCCTGCTTGGAATATTCTCGCTCATAAGGCTTCAAGCTGATTATCTCCTTG TTGTTGGAGTTTGTTTGACACTCAGCATTGCAAATATTGTTGGTTTTACCAAATGCAAAAAAGATGCTAAGAAGCAACTT CAACAATTTGCCTCTCAGACAATTGCCACTCGGTTCTCATCTACCCTACAGTCAGCATTCAGTGTCGTCTAA
Protein sequence (LotjaGi5g1v0232300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPNQQVVENYANPRTCFFHVLFKAASLAFYILSTLFIANFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDLG ESVWKFECLDQESLARMNKKDSWLFWWTLYLTAILWILLGIFSLIRLQADYLLVVGVCLTLSIANIVGFTKCKKDAKKQL QQFASQTIATRFSSTLQSAFSVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 27 | 27 | - | – | |
| PANTHER | 3 | 182 | 180 | 1.9E-102 | ||
| PANTHER | 3 | 182 | 180 | 1.9E-102 | – | |
| Pfam | 13 | 152 | 140 | 3.7E-48 | ||
| Phobius | 28 | 58 | 31 | - | – | |
| TMHMM | 29 | 51 | 23 | - | – | |
| Phobius | 59 | 102 | 44 | - | – | |
| TMHMM | 103 | 125 | 23 | - | – | |
| Phobius | 103 | 125 | 23 | - | – | |
| Phobius | 126 | 130 | 5 | - | – | |
| TMHMM | 130 | 149 | 20 | - | – | |
| Phobius | 131 | 150 | 20 | - | – | |
| Phobius | 151 | 183 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi5g1v0232300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…