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LotjaGi5g1v0232400.3

Overview

Field Value
Gene ID LotjaGi5g1v0232400
Transcript ID LotjaGi5g1v0232400.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Hexosyltransferase; TAIR: AT1G56600.1 galactinol synthase 2; Swiss-Prot: sp|C7G304|GOLS2_SOLLC Galactinol synthase 2; TrEMBL-Plants: tr|I1LB22|I1LB22_SOYBN Hexosyltransferase; Found in the gene: LotjaGi5g1v0232400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:53990329..53991580) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCTCCTAACATCACCACCGTTTCAACCAAAACCACCACCGCTCAAGCCAAAGGCACCGGTGACCGTGCTTTTGTGAC CTTCCTGGCCGGTAACGGTGACTACGTGAAGGGGGTTGTTGGCTTGGCCAAAGGGTTAAGAAAAGCCAAGACCATGTACC CTCTTGTGGTTGCAGTGTTACCTGATGTTCCGGCGGAGCACCGTAAGATCCTCACCTCCCAAGGCTGCATTGTTCGAGAG ATCGAACCTGTTTACCCTCCAGAGAATCAGACCCAGTTCGCCATGGCGTATTATGTCATCAACTACTCCAAACTACGTAT ATGGGAGGTACGTAAATATAATTTCTCAATTTCTTGCAAATTCAAATTTAGAAATTTATTTTTTACCTTATAAATCGAAG AGATAAAGACTGAATCTCATTTCATGTGCAGTTTGTGGAGTATAGCAAGATGATTTACTTAGACGGTGACATCCAAGTGT TTGAAAACATTGATCACCTGTTTGATTTGCCCAACAATTATTTCTATGCGGTGAAGGACTGTTTCTGTGAGCCCAGTTGG CGCCACACCAAGCAGTACCAGATCGGTTACTGCCAGCAGTGCCCTGATAAGGTTCAGTGGCCTAAAAATTTTGGGCCTAA GCCTCCTCTGTATTTCAATGCTGGCATGTTTGTTTATGAGCCCAATCTTACTACCTACCGTGACCTCCTTCAAACTGTCC AAGTCACCAAGCCCACTTCATTTGCTGAGCAGGTAGCTTTTGTCTTTAACATGTCTCTCCATATTTGAGAAATTGTAGCA ATAGCCGTAACATGTGTTTGTATGTATTATTATGGTTTTGTAGGATTTCTTGAACATGTACTTCAAGGACAAGTACAGGC CCATACCAAATGTTTACAATCTTGTGCTGGCCATGCTGTGGCGTCACCCTGAGAATGTTGAGCTTGACAAAGTGAAAGTG GTTCACTATTGTGCTGCTGTGAGTGTTCAATTCAATGCTTAAAATTAAATTTATCCAAATTCTAAGTTTTTTACTAATGG TACTTAATTTGCAGGGATCTAAGCCTTGGAGGTATACTGGAGAAGAGGAGAACATGGAGAGAGAAGACATCAAGATGCTG GTGAAGAAGTGGTGGGACATATATGATGATGAGAGTTTGGATTACAACAATACCGTCAATGAGGATCGTTTCACGGCGGC GCTTCTGGAGGCTGGTGGTGTCAAGTTTATCCCCGCCCCATCCGCCGCTTAG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0232400.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTCCTAACATCACCACCGTTTCAACCAAAACCACCACCGCTCAAGCCAAAGGCACCGGTGACCGTGCTTTTGTGAC CTTCCTGGCCGGTAACGTGTTACCTGATGTTCCGGCGGAGCACCGTAAGATCCTCACCTCCCAAGGCTGCATTGTTCGAG AGATCGAACCTGTTTACCCTCCAGAGAATCAGACCCAGTTCGCCATGGCGTATTATGTCATCAACTACTCCAAACTACGT ATATGGGAGTTTGTGGAGTATAGCAAGATGATTTACTTAGACGGTGACATCCAAGTGTTTGAAAACATTGATCACCTGTT TGATTTGCCCAACAATTATTTCTATGCGGTGAAGGACTGTTTCTGTGAGCCCAGTTGGCGCCACACCAAGCAGTACCAGA TCGGTTACTGCCAGCAGTGCCCTGATAAGGTTCAGTGGCCTAAAAATTTTGGGCCTAAGCCTCCTCTGTATTTCAATGCT GGCATGTTTGTTTATGAGCCCAATCTTACTACCTACCGTGACCTCCTTCAAACTGTCCAAGTCACCAAGCCCACTTCATT TGCTGAGCAGGATTTCTTGAACATGTACTTCAAGGACAAGTACAGGCCCATACCAAATGTTTACAATCTTGTGCTGGCCA TGCTGTGGCGTCACCCTGAGAATGTTGAGCTTGACAAAGTGAAAGTGGTTCACTATTGTGCTGCTGGATCTAAGCCTTGG AGGTATACTGGAGAAGAGGAGAACATGGAGAGAGAAGACATCAAGATGCTGGTGAAGAAGTGGTGGGACATATATGATGA TGAGAGTTTGGATTACAACAATACCGTCAATGAGGATCGTTTCACGGCGGCGCTTCTGGAGGCTGGTGGTGTCAAGTTTA TCCCCGCCCCATCCGCCGCTTAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0232400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAPNITTVSTKTTTAQAKGTGDRAFVTFLAGNVLPDVPAEHRKILTSQGCIVREIEPVYPPENQTQFAMAYYVINYSKLR IWEFVEYSKMIYLDGDIQVFENIDHLFDLPNNYFYAVKDCFCEPSWRHTKQYQIGYCQQCPDKVQWPKNFGPKPPLYFNA GMFVYEPNLTTYRDLLQTVQVTKPTSFAEQDFLNMYFKDKYRPIPNVYNLVLAMLWRHPENVELDKVKVVHYCAAGSKPW RYTGEEENMEREDIKMLVKKWWDIYDDESLDYNNTVNEDRFTAALLEAGGVKFIPAPSAA
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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
CDD
cd02537
23 267 245 2.73387E-75 –
PANTHER
PTHR11183
33 300 268 1.3E-151 –
PANTHER
PTHR11183:SF108
33 300 268 1.3E-151
IPR030515
Pfam
PF01501
34 243 210 1.9E-38
IPR002495
SUPERFAMILY
SSF53448
34 271 238 1.03E-50
IPR029044

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006012
Biological process Galactose metabolic process The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose.
Subterm of
GO:0016757
Molecular function Transferase activity, transferring glycosyl groups Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
Subterm of
GO:0047216
Molecular function Inositol 3-alpha-galactosyltransferase activity Catalysis of the reaction: myo-inositol + UDP-galactose = O-alpha-D-galactosyl-(1,3)-1D-myo-inositol + UDP.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0232400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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