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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0234300 |
| Transcript ID | LotjaGi5g1v0234300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor; TAIR: AT1G09530.1 phytochrome interacting factor 3; Swiss-Prot: sp|O80536|PIF3_ARATH Transcription factor PIF3; TrEMBL-Plants: tr|A0A0B2R1U0|A0A0B2R1U0_GLYSO Transcription factor PIF3; Found in the gene: LotjaGi5g1v0234300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54227575..54233508) extracted from Lotus japonicus Gifu genome v1.2.
GGATCGGCTAGGTTCGCGAGTTGAAGATAAGCATACTCGAACCGTTGATACCGCCGCAAGGTAAATTGCCGCTCTTAGGC CCGAACTAATTCTTTCATAAATGCCAACGATAAAAAATAACCCTCGAACGAAGCTTACAACTCTCATTGTTTTGTGCTCT TCAAAATACAACTCATCTTAAAATCTCAAAAGGTGCTGAGTTCGAATCTCATTCCTCTGCAGTTCATGACGGTTAAAAAC CTACACAAACAAACTAGATGAGTTCATGGTGTCAGTGAGAAAATGGTGTAGACCAATCACAATCACAAGCCTAGGTCAAA AGCCCCAAACAAAAGAGAAGCGTGTGATTCACTCGCATAAGAGGAAGGTGACAACTGACAACCGCACCATTTCAGAAACT AAACCATGAAGACATGTTATGACTAACCATGGTTTAGTTTTCTACAAAACTAGAAACCCCTGAGTTTCTCTCCCACTATC TCTGTTCCTGTCCCTTTTGTCTGTGCGTGCGTTTTGGCATTGGTTCGCTGCAATTTCTGCAAGCCTTTCGCCGCCTTCTA CGTCCATTTGGGTCTGAAATTTTGTGTCTTTCTCTTTCTCTTTCTCCAAGATACACTCTCTCTGAAGCCTAAAAAGATTG CTTTTTGATAACTTCTCTGGTGGTAGGTGAATTTGGGAATGATCACTCCCACTCAAGTTCCAGTTTCCTTGCATTTGGAT TAGGAAAAGCCTTCTGGGTCTGAAAGAGCTTCCTGAAATTTTGCATCTTTTTTGGTGCCCATTTGAGAAGTGGTCACTGG GTTTCAACCTGTGTAGTTATTGCAGCTACATGTGTTTTTCCCTTGATCTCAGCCGAGAATTAGTGTCACTATTGTCAATG GAACCAGTTTTAGAAATAAGATCGAATCTTTAAAAGGTTTCCCCTTACTTTACTTGGCAAGGTTTGTGGATTATTTATAG AATTTGTTTGACTAATGCTGTTTTGTTTATTTAATTTTGTGTTGCTGTGTTGTTGTTTCTCCTTGACAAAGACTAGTTGT ATTATTAAAATATAAGGATTTTTATTTTGCAAATTGTTTCTGCAGTGTGATGTAAGCTTGTTTCTTCTCCTTTTAAATTC AATAGAGATTGATTGTGTAGTGTGGCTTACGTCAGGTTTCTATTCTTCTTCCATGTCCTCAAACTTTCTCAGAAGAGCAT GTTTGAAAGCAGCAACATTTGGAGGCTAAGTGCCTTGGTTTGATTTGAGGCATTTCTGAGTTATTTTTGGTTCTGTTGGT GGATTGATTGATTGATTCATCATGCCTCTATATGAGTTATTCCGGCTGGCTAGAGATAAGCTTGATAAAGAGATCAACAA CACACGTGTAGCTGAACAACCATCCTCGTAAGTTCATTAGCATTAATGGTTGGAGACTTAGTTCGAAAACCACGGTGAAA CCGAAATCATGGTGGACAGGACGATGGAAGCAATTTCCCTTAGCTTTTGCTTCTGTCCACTGTGATTTTGGCTTAAGCAG GTTTTTGAATGAGTTTCCAAACATGGAGTATGTGACCTCTTTACTTGTGTTTGATTTGCATTCTGTTTGTTTATGAGTTT TGGGTTTGAATGTGTAGGCCTGAGGATGATTTTTTTGAGCTGGTTTGGGAGGGTGGTCAAATTTCTAGCCAGGGACAGTC CAGTAGATCTAGAAGGAGCCCATCTTCCAGGAGTTTGCCATCTCATTGCATACCATCTCACAGTCCCAAAGGTCGAGAAA AAGATGCAGGTATAGGATATGGTAACAACACAAAGATGGGAAAGTTTGGGGATTTAGACCCTGAATTGAATGAGATTCCA ATGTCAGTGTCGTCGCGTGAAGTGGGTTTGAATCAAGATGAAGAATTGATGCCTTGGTTGGATTATTCAATGGATGGCTC TTTGCAACATGAATATGGTTCTGATTTCTTACATGAATTATCTGGGGTCACGGAACATGACCTCACCGCCTCCAATAATT ATACTCTATTGGATAAAAGAAGTACTGGAAATCAGGTATTTAGGGAACCTTATAAAAATGCTGCGGAATCAGGGAATGTT TCTAAGGGTTCTTCAGCTGAACAGGTTGAGAATGCTAGACCTAAAGCTAACACCACCCAGTTATACCCTCCATCATTAGT AGCATCCAGAGCATCAGAAATAACTGAAAATAACAACACAAGTAACATGAGCCAGAATGTGCCTTATGGTGAAATTGCTC AGATTCCATCTTCCTCAAGTGATTTTTCTAGCTTGAAGGTGCAGAGACAAGATCATGTAATGCCTCCAAACAATGGTTCC GCGGTAATGAATTTCTCCCATTTTGCAAGGCCTGCTGCTATCGTTAGAGCCAATCTTCAGAACATTAGCTTGAAGTCCGG TTCATCTTCAGCGAGATCAGACAGTGTGGGAGTTAAGAATAAAGGTGCTGCTTCAACTAGCTTCAATCCTCCTGAATCAA CTCTCGTTGATTCAAATGGCGAATGTCCAAAGGAATTAACCATGCACAGCCAGAAGGTTGTTGCACAATCCAAGGCTGAT TTGAAACCTTTGCTGCCAAAATCTCTTGAACAGAATGCTGTAGTTTCTAAACAGACAGAACCTGCTTGCAAAGAGAGTGC TGTTAAGACTGATCAAACTTCCAAACAAGTTATTGCTGAAAATGGTGCTAAAGGACCGACGGCTGCTGAAAGAAGTGCGG AGCCAGCAGTAGCCTCTTCCTCTGTTTGCTCTGGCAATGGTATAGACAGATGTTCAAATGATCCAAATCAAAATTTGAAG CGGAAAAGTAGAGACACTGAGGACTCAGAGTATCATAGTGAAGTAAGTTAATATCATAGGTTTAAACTGTATCTTTACAT TTTTAATTATTTTCCTATTTATTTCATTGTTTCCCTCTATCAACCAAGAAAGCATTTTACTTGAAGGATGCTGAAGAAGA ATCAGTGGGTGTTAAAAAGGCATCTGCTGGACGAGGTACCGGTTCCAAGAGAAGCCGTGCAGCTGAAGTGCATAATCTAT CTGAAAGGGTGAGCAAGGCCATCTGCTATTTGTTGTGTTAATTATCGAACACATTTCGCTCGTGTTTATGCTGTTTCTGA TTTATCTAACATTAATTTTTGCATACAGAGACGAAGAGACAGGATCAACGAGAAGATGCGTGCATTGCAAGAACTCATAC CAAATTGCAATAAGGTTGGTTTCTCCTGGTTTTGCTCTTGTTAAGTAAACCGTACACCTAAAGAACTTAGTTGTTGAATT TGTTGGTTATCACGAAGTATATGAACTTAGATAGTTATTGATGCTCGTTCTTGGGGAATATGGAAAAATTATCTGGTAAT TGGAAGTTACAGCTTAGAGCAATAGATGTCAAACGTCAAGTTAAGCTTTTATTTGCAGGGTTTCAATCCTGTGAAACTTT GTCTTTCATCAAGTATATTTGTAGTAATAATATCAACATAAACTATTAAAATAATTTTTGTGTGTTCATACTCATCAATT TTGGTTTTTCTGACTTTGTATATACAAGGTGGATAAAGCTTCTATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTC AGCTCCAAGTTCAAGTAATCTCTCCCCTCCTCTACTAATATTTTAGTTTTAAGTTTTCTTATTGTAAATGGTCTAGTTAT AGCATGAGATTGATGCCTATCTTCTTATGCAGATGATGTCAATGGGAGCTGGTTTTTATATGCATCCAATGATGTTACCT GGAGGAATGCAGCACATGCATACACCGCATATGGCTCCATTTTCACCTATGGGTGTTGGCATGCACATGGGGTTGGGTAT GGGTTTTGGGATGGGAATGCCTGACATGAATGGTGGATCTTCTAGATTCCCAATGATTCAGGTCCCCCAAATGCACGGAA CTCATGTCCCTGTTGCGCATATGTCTGGACCAACTGCTTTACATGGGATGGCCAGATCAAATTCTCCAGGGTTTGGGCTT CCAGGTCAGGGACTTCCCATGCAAATGCCACATGCTCCCGGATTTCCTTTTCAAGGAGGGCCACTTATGAACTCATCAGC TCCGGTTCTGCATGCATGTGGGCCAGCAGGACTTGTTGGAACCGGGGATTCAGCTTCAGCATCTGGCTTAAAGGATCCAA TGCCAAATGTCGACTCACAAGTTAAGCAAAGCACCGGCAGCCGTGACACAACAAGTCAGATGCCTCACCAGGTCTGTTTA CTGACATATTTCTGAACTTATATGAATATATATCTTAGGATAAAGGTTCAACGTTGATACTTGATAGTTGAGTGTTGATT TATTATACCCTGACCTAGTTATTCAGTTGTATATATAACTGCCAACATTGTTAACTTATGATGCATCTTCTGCTTAGTCT TATTCATTTTCTGTCATTGCTCTCCATTTCTTCCCTTGTGAATTGTGTTACCAGTCATTCTAGGTCACCTGAAATAACCA TTCTTAATTACTGATTTGTTCCAGTTATTTAATTTATTATAGATATCACTTTTGAAAAATGTATATCAGAGGTCACATAA TTTTGTGAATATCCTTCAGATTGTGGATTGTCTGTTTGTTACTTATAACTGCTAAAACTCATTTTTTAGGGAAATGGTAT CTGACAGAACAACTTTTTAAGTATAGATTTTATGGTACAGGACACTTTTTTTTTATACAGAAGGCAAAATCTAAATCAAA AGTGTTTATATGGTTTTATAGCATAAACATTGATGCATCCGTGTCCTGATCTATAATTTCCTTCTAGTCTTATGCTTGAT ATTTGTGTTCTTTTTTTCGTTGTACTAGTGCGAAACAGCAACTGTTGGATTTGAACAGTCAGCTTTGGTGCACAATAGTG GTCAGGCCTCTTTGGCTAATGACAGTGGCGCTGTTAATGGCAAACAAGGTAAATTTGTGATTGGTAAACCTTCTGATTAT GTACCACTAAATGCATGTATTCAAACTCACCTTTTACTTTGTTTTTTAAGCATAAAGGAGTTTCATAATGGAACCAACAA CTTACTGTTGAGTTGTATCTGCAGGTTATGATTGACACTCATCATTGACTGTGCCTATCAGGAGAATCCAGCTTTCCAGA AATGTGAGTCCAAAATCTCTTGTTTCTCATCATGGCAAGTTCAATGCAGATCACTACAGAGGATATTTCAGAGTCATTGA GGATGAAACCATTAGAATCCCTAATTTATGGAGTTAGAAAATTGCACAGATTTTGGGACACGTCACTCCTTTGTACATCC ACTTAGCAAACTGTTCAATCAATTATCACAAAAAATTTATATATCTTAAAAAAATATGCATTTAAAATATTTCATTCAGA TCTTCCACAGTGATTCTTTGTATCAATGAAATAATATATATATTTTTTCCTTGGCAATTTACTCTCTCTCTCTCTCTCTT AGCCCTTCAAAATTAGAGAAAAAATGTCGTGACATATACTTGAAAAGGGTTACTCTTGGAGCACTAAAATGTAGATAACT AATCTAGAGGGATGTCACATTTGTTCATGACATCTTAGTATTCCTGGACTACTTCAAAAGGAAGTAAGAATTTCTTGGAA ATATTATCTGTGTGGAGGTTGGTTTCACATATTACCATACCAGTTAGGCAGTTTCCATTTGAGTCTTACTTATGTCAAAA AACTCTCACTGTGAGAGTTGGCCGCAACAGGATGTGGAAGTTCCCGTCTTGAACATAATTGTCTCTTGTGAAAGATACTT GTGCACAAATAAAAAATACCTGTACAAACGTTTCATATTGCCCCCATTTAGTATAAAAGCCTAGATTTCACATAATTACT AGGGTGTAAGAAAAGTCCATAGACATATTATTCTTGCAGAACTCAAAGATACTGGTCGGTGGCGGAGCAGGTGCTCTAAG TTGTTAGGGTACAG
CDS sequence (LotjaGi5g1v0234300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTCTATATGAGTTATTCCGGCTGGCTAGAGATAAGCTTGATAAAGAGATCAACAACACACGTGTAGCTGAACAACC ATCCTCGCCTGAGGATGATTTTTTTGAGCTGGTTTGGGAGGGTGGTCAAATTTCTAGCCAGGGACAGTCCAGTAGATCTA GAAGGAGCCCATCTTCCAGGAGTTTGCCATCTCATTGCATACCATCTCACAGTCCCAAAGGTCGAGAAAAAGATGCAGGT ATAGGATATGGTAACAACACAAAGATGGGAAAGTTTGGGGATTTAGACCCTGAATTGAATGAGATTCCAATGTCAGTGTC GTCGCGTGAAGTGGGTTTGAATCAAGATGAAGAATTGATGCCTTGGTTGGATTATTCAATGGATGGCTCTTTGCAACATG AATATGGTTCTGATTTCTTACATGAATTATCTGGGGTCACGGAACATGACCTCACCGCCTCCAATAATTATACTCTATTG GATAAAAGAAGTACTGGAAATCAGGTATTTAGGGAACCTTATAAAAATGCTGCGGAATCAGGGAATGTTTCTAAGGGTTC TTCAGCTGAACAGGTTGAGAATGCTAGACCTAAAGCTAACACCACCCAGTTATACCCTCCATCATTAGTAGCATCCAGAG CATCAGAAATAACTGAAAATAACAACACAAGTAACATGAGCCAGAATGTGCCTTATGGTGAAATTGCTCAGATTCCATCT TCCTCAAGTGATTTTTCTAGCTTGAAGGTGCAGAGACAAGATCATGTAATGCCTCCAAACAATGGTTCCGCGGTAATGAA TTTCTCCCATTTTGCAAGGCCTGCTGCTATCGTTAGAGCCAATCTTCAGAACATTAGCTTGAAGTCCGGTTCATCTTCAG CGAGATCAGACAGTGTGGGAGTTAAGAATAAAGGTGCTGCTTCAACTAGCTTCAATCCTCCTGAATCAACTCTCGTTGAT TCAAATGGCGAATGTCCAAAGGAATTAACCATGCACAGCCAGAAGGTTGTTGCACAATCCAAGGCTGATTTGAAACCTTT GCTGCCAAAATCTCTTGAACAGAATGCTGTAGTTTCTAAACAGACAGAACCTGCTTGCAAAGAGAGTGCTGTTAAGACTG ATCAAACTTCCAAACAAGTTATTGCTGAAAATGGTGCTAAAGGACCGACGGCTGCTGAAAGAAGTGCGGAGCCAGCAGTA GCCTCTTCCTCTGTTTGCTCTGGCAATGGTATAGACAGATGTTCAAATGATCCAAATCAAAATTTGAAGCGGAAAAGTAG AGACACTGAGGACTCAGAGTATCATAGTGAAGATGCTGAAGAAGAATCAGTGGGTGTTAAAAAGGCATCTGCTGGACGAG GTACCGGTTCCAAGAGAAGCCGTGCAGCTGAAGTGCATAATCTATCTGAAAGGAGACGAAGAGACAGGATCAACGAGAAG ATGCGTGCATTGCAAGAACTCATACCAAATTGCAATAAGGTGGATAAAGCTTCTATGCTGGATGAGGCAATTGAGTATCT TAAAACACTTCAGCTCCAAGTTCAAATGATGTCAATGGGAGCTGGTTTTTATATGCATCCAATGATGTTACCTGGAGGAA TGCAGCACATGCATACACCGCATATGGCTCCATTTTCACCTATGGGTGTTGGCATGCACATGGGGTTGGGTATGGGTTTT GGGATGGGAATGCCTGACATGAATGGTGGATCTTCTAGATTCCCAATGATTCAGGTCCCCCAAATGCACGGAACTCATGT CCCTGTTGCGCATATGTCTGGACCAACTGCTTTACATGGGATGGCCAGATCAAATTCTCCAGGGTTTGGGCTTCCAGGTC AGGGACTTCCCATGCAAATGCCACATGCTCCCGGATTTCCTTTTCAAGGAGGGCCACTTATGAACTCATCAGCTCCGGTT CTGCATGCATGTGGGCCAGCAGGACTTGTTGGAACCGGGGATTCAGCTTCAGCATCTGGCTTAAAGGATCCAATGCCAAA TGTCGACTCACAAGTTAAGCAAAGCACCGGCAGCCGTGACACAACAAGTCAGATGCCTCACCAGTGCGAAACAGCAACTG TTGGATTTGAACAGTCAGCTTTGGTGCACAATAGTGGTCAGGCCTCTTTGGCTAATGACAGTGGCGCTGTTAATGGCAAA CAAGGTTATGATTGA
Protein sequence (LotjaGi5g1v0234300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPLYELFRLARDKLDKEINNTRVAEQPSSPEDDFFELVWEGGQISSQGQSSRSRRSPSSRSLPSHCIPSHSPKGREKDAG IGYGNNTKMGKFGDLDPELNEIPMSVSSREVGLNQDEELMPWLDYSMDGSLQHEYGSDFLHELSGVTEHDLTASNNYTLL DKRSTGNQVFREPYKNAAESGNVSKGSSAEQVENARPKANTTQLYPPSLVASRASEITENNNTSNMSQNVPYGEIAQIPS SSSDFSSLKVQRQDHVMPPNNGSAVMNFSHFARPAAIVRANLQNISLKSGSSSARSDSVGVKNKGAASTSFNPPESTLVD SNGECPKELTMHSQKVVAQSKADLKPLLPKSLEQNAVVSKQTEPACKESAVKTDQTSKQVIAENGAKGPTAAERSAEPAV ASSSVCSGNGIDRCSNDPNQNLKRKSRDTEDSEYHSEDAEEESVGVKKASAGRGTGSKRSRAAEVHNLSERRRRDRINEK MRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGFYMHPMMLPGGMQHMHTPHMAPFSPMGVGMHMGLGMGF GMGMPDMNGGSSRFPMIQVPQMHGTHVPVAHMSGPTALHGMARSNSPGFGLPGQGLPMQMPHAPGFPFQGGPLMNSSAPV LHACGPAGLVGTGDSASASGLKDPMPNVDSQVKQSTGSRDTTSQMPHQCETATVGFEQSALVHNSGQASLANDSGAVNGK QGYD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 685 | 685 | 5.9E-235 | – | |
| PANTHER | 1 | 685 | 685 | 5.9E-235 | – | |
| MobiDBLite | 43 | 82 | 40 | - | – | |
| MobiDBLite | 43 | 66 | 24 | - | – | |
| MobiDBLite | 176 | 202 | 27 | - | – | |
| MobiDBLite | 180 | 202 | 23 | - | – | |
| MobiDBLite | 288 | 319 | 32 | - | – | |
| MobiDBLite | 288 | 325 | 38 | - | – | |
| MobiDBLite | 359 | 469 | 111 | - | – | |
| MobiDBLite | 359 | 383 | 25 | - | – | |
| MobiDBLite | 400 | 417 | 18 | - | – | |
| MobiDBLite | 418 | 447 | 30 | - | – | |
| Gene3D | 454 | 511 | 58 | 5.3E-20 | ||
| CDD | 457 | 515 | 59 | 4.69459E-18 | ||
| SUPERFAMILY | 458 | 523 | 66 | 7.2E-21 | ||
| ProSiteProfiles | 461 | 510 | 50 | 18.349 | ||
| Pfam | 465 | 511 | 47 | 6.1E-14 | ||
| SMART | 467 | 516 | 50 | 7.6E-18 | ||
| MobiDBLite | 654 | 687 | 34 | - | – | |
| MobiDBLite | 668 | 687 | 20 | - | – | |
| MobiDBLite | 705 | 724 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi5g1v0234300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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