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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0236300 |
| Transcript ID | LotjaGi5g1v0236300.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyketide cyclase / dehydrase and lipid transport protein; TAIR: AT4G01650.3 Polyketide cyclase / dehydrase and lipid transport protein; Swiss-Prot: sp|Q06442|WNT5A_AMBME Protein Wnt-5a; TrEMBL-Plants: tr|I1LAW0|I1LAW0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0236300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54420156..54422880) extracted from Lotus japonicus Gifu genome v1.2.
CAATTTCAACTTGTGGCTTTGGTTGCAAAGAAAGACCAATCTACTATACAAGAGAACACATCCCAAGCAACACAAGACAA GACAAGACAAGACAAGACAAAACAATGCGCGCCCTCCCATCTTCCTCAGAATCATCACACTGTGCAGCAGCATTCCTCTT CCCTCAATCACCAACCCCTTCATGCTCCAACTCCATAGCCATAACCCACTCTTCCCTCTTCTTCTCACACCCTTTTCATT ACCATTCCCTCTGCACCACCCCACCTTCAAACTTCAAACCTCTCTTGCACCGTGCTTCCAAATCCAACCCCACCACCTCG GAAGTGGGAGTTGAAGAGTCAGCAACGTTGACTGAAGATGGGGTATGCATAGAGGTGACGAAGCTGGAGAAGAACTCGCG CAGAATCGAGTCCAGGATTTCCATTGATGCTTCGCTTGATGCGGTATGGAGCATCTTGACTGATTATGAGAGGTTGGCTG ATTTCATTCCTGGCCTTGCTGTTAGTCAATTGCTCCAAAAGGGTCACAATTTTGCTCGTCTTTTGCAGGTTTTCTTCATT TCTCATCTTTTGCTCCAAATGGGTATCTTAAAGTTTGTTTTTTAATTAAATTAGTTGCATGTTTTTGGATATGCTTGTGC AATTGGGTATAGTGAAAGTTTACTTGCATTTTTTGTTGTTATTGCTATGTACTATGTAGTAGACTATTAGGGACCTTCCT TTACTTGATAGTAGTTTGATTTTGCAACTCTTTGGTGGACCTTATGGCCTTGCTGTTGAATATTGCAATGTAAAACAAAA GGCACATTATTTGAGAGACTTTCGAAACTCGAGAGTTTTTAATTCAGTATGGTTTAGCAGATTTCATGAATTTTCATTTT GCTTTTGTTGTTATTTTCATCCAATTCTGTCAATACACAGGTTTTAATTGCTCAAATTTAACTTGCATTACCCTCACAGA CACGCACATACACCTCATAATTGATTGGTTAAGCAAAAAGAAAGAAAGAAAGAAAGAAAGACCAGCCTGATTATGTTGTA AAGGATTGGCTCTATGCATCCAGCTTCATGGTATATGATCACGTACCATGCTTGACCAGAGCAATATAAGTACCTCGAAT GATCACGTTGCGTGTTTGATCAGAGTTGTGTGTGTGTGTGTGTCTGTACCCTTGAAGTATGGGAATACTGATGTTTGAGG ATGATATGGGCACAGCTAGTTGGTGCAGCATTTTACTTTCAAAACGAGAGTCAGTGTGATGTTATGCCTATAATACTGAG TTTTAGTTTTTGTGACAAATAGAGAATAAATGATTGAGCGTCCAGGCGAATAGCAAACTTTATGTGGGATTACACTATAG TATGGCCAAGCATGTTTTTACCTAATTTACTTAAGTAACAGCCTTCAGAAATTCAATGCCACACTATGATTTGTTTTCTC ATGACCTGAACTATGAACTGATGTGTTGGAGATTTTTCCATTTTAATGAATTTGGCTTGAATTATATCTATTGTTATTAC TTTATCTAAACAGATTGGAGAGCAGAACTTGGCATTTGGGATAAAGTTTAATGCTAAAGGAGTTGTAGATTGTTATGAGA AAGAGTTGGAGACTCTTCCTTCTGGAATGAAGCGTGATATCGAATTCAAGATGATTGAAGGAGACTTTCAACTCTTTGAA GGAAAATGGTCTATTTTGCAGGTAGGACTTTTGTTTGTTCCCCTGTTGTTAGAATTCTTCTGAATCAAGCACAATAAATC ATACACACTTGCAGAAATCAGGGTGTGAGGCACTATTCCAAGTACTTTTCAAATGTTGAACTTACAAGTTTCTAAAATTG AAAATATAAACTTCGTGAACTTACAAGTTACTTAGAGTGGAATAAATCATATCTTGGGAACTCAAATTATTGACCAAGTT GGGACTAACATGACAGCTATATTATTGACCAAAGGGATCTTGTTTTCTTTTTGTAGTCTTCTTCAGTTTTCAATATATTC ATTGGTTTTGTTTTGAAGTTTATAAGATTTTGAACCCTTTTATTCAATGAGATTGACATACAAATACAATGCTAACTTAG ACAATGATGGTTTTTGCAGCAGTTCAATAGCAGAAGTTGTGAGGAGACTCAAGTACAAGAAGTTAATACAACTCTCTCTT ACATTGTTGATGTTAAGCCCAAGCTGTGGTTGCCTGTTCGTCTCATAGAGGGTAGACTTTGCGACGAGATAAAGAAGAAC CTTGTATCAGTCAGGGGTGAAGCTCAAAAAGCTACTGACAGAGAAGTTATGTAATTAATGATCCTACGAAGATATCGACT AGTTTTGCCTTGGTTGTCGAGACCTAACACAACCTCTCATCCTTTACCTAGGCTTGGAACCGGCCATGCAAGCATAGGCG GAGTATAGAAGTATAGTTCACACATCAGTTTTCACTTGGTAAAGCTGCAAGATTGACCTTATTCTGGTCCTAAAATATCT TTATGTGTAATTGTAAAACCATTAGTTCAAAGAAAATCATGAAAAGGTCATTTCAACCTTAATTGAACATTTTCTTTATC TTTGGCTTTCGATGTTTTGAAATTTGTAAAGAGAAATACTATAACACTTACTTTTCACTCTCTTTTATTGGTTGAAATTC ACGTGAGTCCATTAAATCGTAGATTTCCATTGCAAAAAATAAGTTTTGGTGATTTTAATGTGGTGCAGTATCAAGAATGA AAGTG
CDS sequence (LotjaGi5g1v0236300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGCGCCCTCCCATCTTCCTCAGAATCATCACACTGTGCAGCAGCATTCCTCTTCCCTCAATCACCAACCCCTTCATG CTCCAACTCCATAGCCATAACCCACTCTTCCCTCTTCTTCTCACACCCTTTTCATTACCATTCCCTCTGCACCACCCCAC CTTCAAACTTCAAACCTCTCTTGCACCGTGCTTCCAAATCCAACCCCACCACCTCGGAAGTGGGAGTTGAAGAGTCAGCA ACGTTGACTGAAGATGGGGTATGCATAGAGGTGACGAAGCTGGAGAAGAACTCGCGCAGAATCGAGTCCAGGATTTCCAT TGATGCTTCGCTTGATGCGGTATGGAGCATCTTGACTGATTATGAGAGGTTGGCTGATTTCATTCCTGGCCTTGCTGTTA GTCAATTGCTCCAAAAGGGTCACAATTTTGCTCGTCTTTTGCAGATTGGAGAGCAGAACTTGGCATTTGGGATAAAGTTT AATGCTAAAGGAGTTGTAGATTGTTATGAGAAAGAGTTGGAGACTCTTCCTTCTGGAATGAAGCGTGATATCGAATTCAA GATGATTGAAGGAGACTTTCAACTCTTTGAAGGAAAATGGTCTATTTTGCAGGTAGGACTTTTGTTTGTTCCCCTGTTGT TAGAATTCTTCTGA
Protein sequence (LotjaGi5g1v0236300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRALPSSSESSHCAAAFLFPQSPTPSCSNSIAITHSSLFFSHPFHYHSLCTTPPSNFKPLLHRASKSNPTTSEVGVEESA TLTEDGVCIEVTKLEKNSRRIESRISIDASLDAVWSILTDYERLADFIPGLAVSQLLQKGHNFARLLQIGEQNLAFGIKF NAKGVVDCYEKELETLPSGMKRDIEFKMIEGDFQLFEGKWSILQVGLLFVPLLLEFF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 70 | 205 | 136 | 2.3E-66 | – | |
| PANTHER | 70 | 205 | 136 | 2.3E-66 | – | |
| SUPERFAMILY | 100 | 205 | 106 | 3.06E-10 | – | |
| Gene3D | 100 | 206 | 107 | 5.0E-17 | ||
| Pfam | 107 | 205 | 99 | 1.0E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0236300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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