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LotjaGi5g1v0236900.1

Overview

Field Value
Gene ID LotjaGi5g1v0236900
Transcript ID LotjaGi5g1v0236900.1
Lotus japonicus genome version Gifu v1.2
Description Pectin lyase superfamily protein; TAIR: AT3G61490.4 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|I3T934|I3T934_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0236900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:54475937..54477675) extracted from Lotus japonicus Gifu genome v1.2.

CATTTTGACATCAATTGTTCGTTTTTTTTTTTTTAATTTTCTCCTAAATAAACATTTCCATTGACCATTGACCAACATTA ACAGGTTGAATTAGAGTGGCCCTCTCTTCCTGTTCTTCCATCATATGGCAGAGGAAGGGATGCACCTGCTGGAAGGTTCA GTAGTCTCATTTTTGGAACACACCTCACTGATGTTGTTATTACTGGTAAAACTACAACGCCCATGTATTATCATCTCTAT TAGAATTTGTTAATATCATGCCCCTTTGGAAAATCATTTTTAATGTCACATGTTTTGAATTTGTTCATTAGGTCACAATG GTACTACTGGTGGGACAAGTTCCACAAGGGACAATTAAAACTCACCAGGCCTTACATGATTGAGATTATGTACTCTAATC AAATTCAAATCGCAAATCTTACTTTGGTCAATTCCCCATCTTGGTTTGTCCATCCAATTTACAGCAGGTTTGACAATGAT TTTCATTTCAATTTATGTTCAATCTTCATGGACCTTATGTTCTGTTCTGTTATCCTCATGTTCTTATCACACCTTTCTCT GCAGTGACATTATAATTCAAGGGCTGACCATTCTTGCACCAGTTGACTCTCCCAACACAGATGGAATTGATCCTGGTAAT TTTTATATCATTTATGTAATTCTATTATATATAGTTTATTTCCACTGGATTTCAATTTAGTCCTTAAAAGATGGAAATTA TGATTAATATGATCCTTGAAGAATGAAAAAAGACAAATCTTGAAAGACTAATTGAAATTTGGTTTCATCTTTCGGCTGCT AGTTTGTCTACTTTCTTAGCCCTGATATTTTTCATTGACTAAAGTTACTATTCACTCAAATTTCAATCATTCTCTAACTA TTTTTTCTTCCATTTTACAGATTCTTGTTCCAACACTAGGATTGAAGATTGCTATATTGTATCTGGTGATGATTGCATTG CAGTGAAAAGTGGTTGGGATGAGTATGGAATCAAAGTTGGGATGCCAAGCCAACACATAATAATCAGAAGACTTACATGC ATATCCCCTGATAGTGCTATGATTGCTTTAGGAAGTGAAATGTCTGGTGGAATACAAGACATTAGAGCAGAAGACCTCAC TGCTATCCACACTCAATCAGCAGTTAGAATCAAAACTGCAGTTGGTAGAGGAGCATATGTGAAGAATATTTTTGTCAAAG GAATGAACTTGTTCACCATGAAATATGTGTTTTGGATGACAGGTTCTTATGGATCACACCCTGACCCTGGCTTTGACCCA AAAGCACGACCTACCATCACAGGAATCAATTATAGAGATGTGATTGCAAAGAATGTCACATATTCTGCAAAGCTTGAAGG AATTGCTAATGATCCTTTCACTGGAATTTGCATTTCTAATGCGAATATTGAGAAAGTGGGAAAGAAATTGCAATGGAATT GCACTGATGTTCACGGTGTTACAAGCAATGTGTCTCCTGAACCTTGTGCATTGCTGCAAGAGAAGCCTGGGAAATTTGAC TGTCCTTTTCCAGCAGACAAACTTCCCATTGAAAGTGTTCAGCTGAAGACTTGTTCCTTTAAAAGTTTGTCACTATTTTG AGAGAATGAATGTATTTTAAATTTTGAATGTAATACAGTAATGGTGCTATTGTTATCTATGAAAGAGTTCTGAAAAAAGT AAATCAAAACTATTGTTATCTAATGCTATTTTTATACATGTGTTTTCCTTAGTACCAAA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0236900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATTGAGATTATGTACTCTAATCAAATTCAAATCGCAAATCTTACTTTGGTCAATTCCCCATCTTGGTTTGTCCATCC AATTTACAGCAGTGACATTATAATTCAAGGGCTGACCATTCTTGCACCAGTTGACTCTCCCAACACAGATGGAATTGATC CTGATTCTTGTTCCAACACTAGGATTGAAGATTGCTATATTGTATCTGGTGATGATTGCATTGCAGTGAAAAGTGGTTGG GATGAGTATGGAATCAAAGTTGGGATGCCAAGCCAACACATAATAATCAGAAGACTTACATGCATATCCCCTGATAGTGC TATGATTGCTTTAGGAAGTGAAATGTCTGGTGGAATACAAGACATTAGAGCAGAAGACCTCACTGCTATCCACACTCAAT CAGCAGTTAGAATCAAAACTGCAGTTGGTAGAGGAGCATATGTGAAGAATATTTTTGTCAAAGGAATGAACTTGTTCACC ATGAAATATGTGTTTTGGATGACAGGTTCTTATGGATCACACCCTGACCCTGGCTTTGACCCAAAAGCACGACCTACCAT CACAGGAATCAATTATAGAGATGTGATTGCAAAGAATGTCACATATTCTGCAAAGCTTGAAGGAATTGCTAATGATCCTT TCACTGGAATTTGCATTTCTAATGCGAATATTGAGAAAGTGGGAAAGAAATTGCAATGGAATTGCACTGATGTTCACGGT GTTACAAGCAATGTGTCTCCTGAACCTTGTGCATTGCTGCAAGAGAAGCCTGGGAAATTTGACTGTCCTTTTCCAGCAGA CAAACTTCCCATTGAAAGTGTTCAGCTGAAGACTTGTTCCTTTAAAAGTTTGTCACTATTTTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0236900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIEIMYSNQIQIANLTLVNSPSWFVHPIYSSDIIIQGLTILAPVDSPNTDGIDPDSCSNTRIEDCYIVSGDDCIAVKSGW DEYGIKVGMPSQHIIIRRLTCISPDSAMIALGSEMSGGIQDIRAEDLTAIHTQSAVRIKTAVGRGAYVKNIFVKGMNLFT MKYVFWMTGSYGSHPDPGFDPKARPTITGINYRDVIAKNVTYSAKLEGIANDPFTGICISNANIEKVGKKLQWNCTDVHG VTSNVSPEPCALLQEKPGKFDCPFPADKLPIESVQLKTCSFKSLSLF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31339:SF12
1 282 282 2.2E-162 –
PANTHER
PTHR31339
1 282 282 2.2E-162 –
Gene3D
G3DSA:2.160.20.10
1 249 249 2.1E-66
IPR012334
Pfam
PF00295
2 240 239 2.3E-28
IPR000743
SUPERFAMILY
SSF51126
2 280 279 6.16E-64
IPR011050

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004650
Molecular function Polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.
Subterm of
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0236900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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