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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0239300 |
| Transcript ID | LotjaGi5g1v0239300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RADIALIS-like transcription factor; TAIR: AT1G75250.1 RAD-like 6; Swiss-Prot: sp|Q58FS3|RAD_ANTMA Transcription factor RADIALIS; TrEMBL-Plants: tr|I3SZN8|I3SZN8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0239300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54746046..54748030) extracted from Lotus japonicus Gifu genome v1.2.
ATATAAATTTCCACATGAATCAAGCGTTGGCACCACATGACATCAAGTAGATGCTAATTCTTGGAAGAAATGGAAAGTGA GGTACTTGTTTTGTCTATTTTATATTATCCCTTGCTGTTTTCGCCCAAAATAATCAATCTTTCACTGTCTTGAGTTTTAT TTAGTCTCAATATCTAGCCCTTCTAATCACACGAAAGATTAGATGATTTTTCAGGTCACTGCAGCTATTTGACTCCACCA AGCATCATAGAGGTGTGAGATTATGATCAAGAGAATACAACAATGAAGAATCAGCTGAGGGTTCAGTGAGATTCTCTAGT ATGAATCAGTGAATCACCCTCCAAAGTTATCATAATGTAAATGAACTACTGGGATATCTTAAATTTTCTCAGAGTCACGA TGTGTGTGTTTGAATATCAGTTAAGTCCAATGTGAATGAACTTTCATTCCAATTCATAATAAGAAGAGTTTTATTCACTT TTTGACTCTGTCATTCTAAATGAGTGAGGCTCAGGCTAGTGAGATGGATGTTTTTCATAAGGGAATATGTGAGTGGAGTT GGAAGGAGAACAAGGTGTTTGAGCTGGCTCTAGCAATGGTGGATGAGAACCACCCACAAAGGTGGGAGGTGGTTGCAGCC TTGCTTGGAGGAAAAAAGAGTGCAGGGGAGATTCAAAAGCATTATGTGATTCTTTTGGAGGATTTAGAGCTTATAGAATC TGGAAAACTGGACCAACAACTGGGAGAGGCTAGGCCCTGTCTCCTTGTTGAAGGTATCAAGTCCTTATGCTTCTCTGATG ATGAAACAAACATGTAAGTAACTTTTTCTTTGTGGAATAACAAAAATTCTTATCTCTCACCTGGTAAGAAGTTAGAACTG TGTACATATATGTAGAATTAGACCACGCAGCTTATTTTTTATCAGAATCAATTTTGACACTAAATTCAAAGGTGTCAGAT TACAATTCATTGCCCACACTGCAAATTCTGCTCATTTATTTTCTCTGCTTTTCTCTGTTTTGTTTCTGTTTTTACATTTC AACTTACAATGATCAACATACATACATCGCCGAAAGTTACAGAATACATAAAATGCCTGATTACAGTGTCAACTCTGCTA CAGAAATTTATGAGACAGTAGAAACTAGAAAGATTGATATGTTGGATCGATCATGATGATGGGTTCCCCTAACCATCTTG CAGAGACAATTTTGGTTTTAATAATGCTTGCTCCACAAACTAGACAAAAGAATAATCTTTTGTTAGACAAAATGCCAAGG ATCTTGATGGTGAATTATCCCAGTTGATGTGGTTCTGAACTGCTTATTGAAGTGTGGCAAGCCCGGCATCATGTCCTGAA TAGAATGCATGTATGAGAATCCTTATGACCTTAAAATTCAACCAAATAAACTCTCCTTACTAGTTTGGTTGCATTGAATC AAATATGGAATTAAGAAATAAGATGTTCAATCTACAAATTGCTGTATAAAACATAAGTTGAAGAAATAAGACAACCATGT TTGAGTACACGGATGGTGAAACCGAAATCAGACAACCATAAAAACTAAGGCGATTTGCTTCTATCCACTGTAATTTTAGC TTACCGTATTTTTTCTACTGTGTATCCTAACATGCTCTCATGAGAAATGGAGACTGAGACGTGGCCAGGGAAGAGGCAGT GCATGAGTAGAGCCACAACAAACATCTCCCATTCTCAATTTATTTTGTTGATAGCTCCATCCATGCTCTGCCTCTTCCCT GCCATTGTCTTGTCTCTCCATCAAGATTAACTTAGCTCATCCCTGTCAACATCAGCAAAATAACATTAAGCAGATACTAA ATGCATAAAATGATTATATCTGTAAAAAAATTCCATCTAATAAGGTTTCCTCCACTCTTTTCTAGTTCAAAAACTGACTT TTTTAGATCATGCACAAATGCATTCTTGAAAGTATTATTCAGTTCGATTCTATATGTAGTAGCAT
CDS sequence (LotjaGi5g1v0239300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGAGGCTCAGGCTAGTGAGATGGATGTTTTTCATAAGGGAATATGTGAGTGGAGTTGGAAGGAGAACAAGGTGTT TGAGCTGGCTCTAGCAATGGTGGATGAGAACCACCCACAAAGGTGGGAGGTGGTTGCAGCCTTGCTTGGAGGAAAAAAGA GTGCAGGGGAGATTCAAAAGCATTATGTGATTCTTTTGGAGGATTTAGAGCTTATAGAATCTGGAAAACTGGACCAACAA CTGGGAGAGGCTAGGCCCTGTCTCCTTGTTGAAGGTATCAAGTCCTTATGCTTCTCTGATGATGAAACAAACATAGACAA TTTTGGTTTTAATAATGCTTGCTCCACAAACTAG
Protein sequence (LotjaGi5g1v0239300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSEAQASEMDVFHKGICEWSWKENKVFELALAMVDENHPQRWEVVAALLGGKKSAGEIQKHYVILLEDLELIESGKLDQQ LGEARPCLLVEGIKSLCFSDDETNIDNFGFNNACSTN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 105 | 97 | 1.4E-43 | – | |
| PANTHER | 9 | 105 | 97 | 1.4E-43 | – | |
| Gene3D | 17 | 78 | 62 | 1.7E-14 | – | |
| SUPERFAMILY | 18 | 73 | 56 | 9.71E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi5g1v0239300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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