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LotjaGi5g1v0239800.3

Overview

Field Value
Gene ID LotjaGi5g1v0239800
Transcript ID LotjaGi5g1v0239800.3
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB; TAIR: AT3G16190.1 Isochorismatase family protein; Swiss-Prot: sp|Q93Z51|NIC4_ARATH Probable inactive nicotinamidase At3g16190; TrEMBL-Plants: tr|I1KGM1|I1KGM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0239800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:54780105..54781894) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCAGAGGATTGGAAACGCACAGCTCTTCTTGTCATCGACATGCAGGTAGATACTAGTACACTCTGTCTCTTCCCAAT GTTGTTCTTCTTGTCCCTCAGGGTGTTCTTGGAGATATTAAACTTTTTCTCTTTATTTGTGAGCTTGCAGAAAGATTTTG TAGAAGGAGGTCCTATGCTAGTGAAAGGAGGGAAAGATATTGTCCCCAATGTGATTAAGGCTGTGGAAGTTGCCAGGGAG CGTGGAATTCTTATAGTTTGGGTAACAACTGTTCATTCCCTCTTTGAAAGTGTATAGAATTAAGTTCATTTTAGTTTTCA TAATTCCTTAGGTTCTCAAATTAAGTGTTTTTGAAGAGACTTATTATCAGAATGGTCCATATATTTTCTATTTGCCAACA TGAAGAAATGAAGAAAACTACTTATATTCACTAGATATCTTGTGCTGTTGATATTTAAGAAAATAGTTCTGTAATTGTTG AGTGACTTGAGTAATGTCTCTCAAAATATTTCCAGGTTGTACGCGAACATGATCCCTTAGGAAGAGATGTTGAACTCTTT CGTCGTCATCTATATAGTCCAGGGAAAGTTGGTCCAACCTCTAAAGGAAGTGAAGGAGCAGAGTTAGTTGATGGGTTGGT AATTAGAGAAGGGGATTATAAACTGGTGAAAACCAGGTTTAGTGCATTCTTTTCTACACACCTTCATTCAGTCCTTCAAG GAGCTGGAATTAATAGTCTGGTGGTCACTGGTGAGTAAGTGTTTTAATGCTGTACATGAGTTTGCAGTTTTACATTTATG TGTAGACTTAATATAGCTTTATTTGTAGGTGTTCAAACTCCAAACTGTATCAGGCAAACTGTCTTTGATGCTGTAGCATT GGACTATAAACCTGTAACTGTTATTGTTGACGCCACAGCGGCAGCGACACCTGACATTCATCTTGGTATGTATTTATCAG CTTCTTGAAATCCTTGCATATTAAATGGTAGGAACTTTATTTTGATAACCATCTATTAAAGACCTTCTCTGCCATAGATA TTTAAGGAAAAAATGGTCAGAAAACTAGTGTGATCAGCTTAACAATGTCTTATTTTTAAATTTGTGTGTTGTGATGGGAA GAGTATCTAGTAGTTCCAAATATATTATTCATTCATATGCCCAAGCCCAGGAATTTGAGCAGAGAGATAAATCTCTGATC TTTGTGAAGTTATGTTGCGGTTAGTTTGACTTATGATTACTAGGGTTTGGCCAATTTTCAAAAACACGTCTTAGAAATTT AGAGATTAAGGAGTTATCTGACATTGAAGATGTGTAGTTTAGTTAGCAACACCCTTATAAGAGTGTATAGTTGTAAATCG GAAATCTATTCATCATGAATGATTACATCAAATTTTAACTATGAGTAAGTTGGTATTGGCTTATGGAGTGGAATATAATG CATTCATAAAAGTGGTGACATGTTTGATGAGTTGAGGACATTATTGTTGTGAAGATGAAATTTCTTGCTTTCTCCTTTGA ATTAACATGGTTGCACTGGTGATATATTTTTTATGCTATCATGCCCCACAATTCTTTAAACCCATTTCCTTCGTGGCTAC ATTTTGATATTCTAGGTTCCCTCAAGGCAGAGAGATATTTTGTTCTTTTTTTAAAAATAAGATTGTGATCAAATTTTATT AGATGGTAATGAAGGCTAATATCTGGGTGGTTTCAGCCAATGTGTTTGACATGAAAAATGTTGGAGTTGAAACCCCAACA TTACAAGAGTGGAGCGAATCCAAAGCTTGA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0239800.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAGAGGATTGGAAACGCACAGCTCTTCTTGTCATCGACATGCAGAAAGATTTTGTAGAAGGAGGTCCTATGCTAGT GAAAGGAGGGAAAGATATTGTCCCCAATGTGATTAAGGCTGTGGAAGTTGCCAGGGAGCGTGGAATTCTTATAGTTTGGG TTGTACGCGAACATGATCCCTTAGGAAGAGATGTTGAACTCTTTCGTCGTCATCTATATAGTCCAGGGAAAGTTGGTCCA ACCTCTAAAGGAAGTGAAGGAGCAGAGTTAGTTGATGGGTTGGTAATTAGAGAAGGGGATTATAAACTGGTGAAAACCAG GTTTAGTGCATTCTTTTCTACACACCTTCATTCAGTCCTTCAAGGAGCTGGAATTAATAGTCTGGTGGTCACTGGTGTTC AAACTCCAAACTGTATCAGGCAAACTGTCTTTGATGCTGTAGCATTGGACTATAAACCTGTAACTGTTATTGTTGACGCC ACAGCGGCAGCGACACCTGACATTCATCTTGCCAATGTGTTTGACATGAAAAATGTTGGAGTTGAAACCCCAACATTACA AGAGTGGAGCGAATCCAAAGCTTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0239800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAEDWKRTALLVIDMQKDFVEGGPMLVKGGKDIVPNVIKAVEVARERGILIVWVVREHDPLGRDVELFRRHLYSPGKVGP TSKGSEGAELVDGLVIREGDYKLVKTRFSAFFSTHLHSVLQGAGINSLVVTGVQTPNCIRQTVFDAVALDYKPVTVIVDA TAAATPDIHLANVFDMKNVGVETPTLQEWSESKA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR47044:SF4
1 193 193 2.9E-113 –
PANTHER
PTHR47044
1 193 193 2.9E-113 –
Gene3D
G3DSA:3.40.50.850
2 194 193 6.6E-54
IPR036380
SUPERFAMILY
SSF52499
4 190 187 2.22E-54
IPR036380
Pfam
PF00857
8 183 176 4.0E-39
IPR000868
CDD
cd00431
9 177 169 1.09497E-50 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0239800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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