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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0241300 |
| Transcript ID | LotjaGi5g1v0241300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT4G37850.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9T072|BH025_ARATH Transcription factor bHLH25; TrEMBL-Plants: tr|A0A151TJ50|A0A151TJ50_CAJCA Transcription factor bHLH25; Found in the gene: LotjaGi5g1v0241300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54961758..54963489) extracted from Lotus japonicus Gifu genome v1.2.
TCTAGGTTTAAGGTTTTGGCAGTGCGTATGAAAAAATATTTGTCAAAAGAGATTTATCAATTTAAAGTAATTTTCGAATT TTGAGAGATTAATGTTATAACCGTCTGTTGTCAACTACAACATACAGGAAAAAATAGCAACTCAGCTAACAAAGAGTAAT ATACGGATATAACATAACCAATTGCTAGCTGTTTAATAAATTTATCAAATTTCACATATTAAGAATATATTAACCAGCAC ATACCTTACTCTTCATACCGTCGCAGGTACTGATTTCTTTATCAGTTTGGAGTATGAATGTGTTGTGTTTGTGATAATGT CTAAACCAAATACCTGATTTTTTTCTTCTTCTTTTCTTTCAGGTTCACTGGTCGATCCTAAGCTTTCTCACAAGTCACTG AAATATAACTTGCAAAGATCTTTCTCTTGCCCCACCAACTCCACGTCTCCACCTTCAAAACAGAGAACTGCTGCAGCAGC ACCATGAGAAACTCCTCCTCAGCCAGATCTCCTCACCAAGCTCAAGATCACATAGTTGCTGAGAGAAAGAGGAGAGAAAA GATTAGCCAGCAGTTCATAGCTCTTTCAGCTCTTATTCCAGGCCTAAAAAAGGTTCAGTTTTCAGTAATAAAACCCAAAA CCCAGAATGGCTACTTAATTTTTCTGCTGATTATAGTTAGGTGGATATATGCATTTTTTATGCGTACTGATCATCAAAGG GTATGTAAATGTAATGCAGATAGATAAGGCCTCTGTTCTGGGGGACACTATACAACACATTAAACAGCTCCAAGAGCAGG TGAAGCTACTGGAAGAGCAAAGCAAAAGGATAAACGCAGAATCAGTGGTATATGTTGATAAATCTAAGTCCGAAGATGTC TCAGACACATCCTCAAATAATGTCTCACTGCCTGAAATTGAGGCAAGGGTGTTAGAGAACAAAGTTTTGATCCGAATCCA CTGTGAGAAACAGGAGGGGGTGCTGATGAATATACTCAGAGAGATAGATAACCTTGATCTAACAGTGATCAATAGCAGTA CCTTGCATTTCGGGGCCTCCAAACTGGACATAACCATCATAGCCGAGGTATTAATTACTTCATTTCATGGCCTTCGTTAA TCAAGCCCTTAATTAGTATACTCCTAGTTTAACCAAGTTCAAATTAAATAATGTCATGTGTAAATGAGTGTCCATTTTGA TTTGTTGAGAATGTGAAGGTAAGTGTGTGAGTCTAAGTTACACATTATTGTTAATGGAGTTCTACGTTGGATGGTTAAAA GTGGATTTGTTGAAATAGACAATATAAAAATTGAGACATTCTCTTGATTTCTTGTTTTCATAGCTAGACTATTGTCACTT TACATTATAGTAAGGATGGATCTAGTTTGGAATTGTACACATCATTTTTTTCAACTTGTTGCAAATGCATGCAGATGGAT GATGAGTTCAAGCTGAGCGTGAAGGAACTGGCTAGAAAGCTTCGAGTGGGGCTCTTGCAATTAATGTAGCATTTATTCAG TTAGAGGTCTTTTCATACACATGCATTAGCAGCCCTCACTTTAATGTATTACATTATGGAGTCAGTAAATGTCATGTCCA TCTTCTTAGCACTTGGAGAAATAAAATAGATAGTAACGTCTCTTTTTGTTTTAGTCTGTTCAATTTATTCTAAACGTGTT GTTTGTTGTTTGGCTGGAAGCATTTGATGGTAGATATTTTTTTTGGTTGGGG
CDS sequence (LotjaGi5g1v0241300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAAACTCCTCCTCAGCCAGATCTCCTCACCAAGCTCAAGATCACATAGTTGCTGAGAGAAAGAGGAGAGAAAAGAT TAGCCAGCAGTTCATAGCTCTTTCAGCTCTTATTCCAGGCCTAAAAAAGATAGATAAGGCCTCTGTTCTGGGGGACACTA TACAACACATTAAACAGCTCCAAGAGCAGGTGAAGCTACTGGAAGAGCAAAGCAAAAGGATAAACGCAGAATCAGTGGTA TATGTTGATAAATCTAAGTCCGAAGATGTCTCAGACACATCCTCAAATAATGTCTCACTGCCTGAAATTGAGGCAAGGGT GTTAGAGAACAAAGTTTTGATCCGAATCCACTGTGAGAAACAGGAGGGGGTGCTGATGAATATACTCAGAGAGATAGATA ACCTTGATCTAACAGTGATCAATAGCAGTACCTTGCATTTCGGGGCCTCCAAACTGGACATAACCATCATAGCCGAGATG GATGATGAGTTCAAGCTGAGCGTGAAGGAACTGGCTAGAAAGCTTCGAGTGGGGCTCTTGCAATTAATGTAG
Protein sequence (LotjaGi5g1v0241300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRNSSSARSPHQAQDHIVAERKRREKISQQFIALSALIPGLKKIDKASVLGDTIQHIKQLQEQVKLLEEQSKRINAESVV YVDKSKSEDVSDTSSNNVSLPEIEARVLENKVLIRIHCEKQEGVLMNILREIDNLDLTVINSSTLHFGASKLDITIIAEM DDEFKLSVKELARKLRVGLLQLM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| Gene3D | 3 | 77 | 75 | 1.3E-16 | ||
| PANTHER | 5 | 179 | 175 | 1.8E-84 | – | |
| PANTHER | 5 | 179 | 175 | 1.8E-84 | – | |
| ProSiteProfiles | 11 | 60 | 50 | 14.97 | ||
| Pfam | 14 | 61 | 48 | 2.8E-10 | ||
| SUPERFAMILY | 15 | 77 | 63 | 5.23E-17 | ||
| CDD | 16 | 65 | 50 | 4.33407E-10 | ||
| SMART | 17 | 66 | 50 | 2.2E-13 | ||
| Coils | 50 | 77 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi5g1v0241300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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