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LotjaGi5g1v0243200.1

Overview

Field Value
Gene ID LotjaGi5g1v0243200
Transcript ID LotjaGi5g1v0243200.1
Lotus japonicus genome version Gifu v1.2
Description WRKY family transcription factor; TAIR: AT2G47260.1 WRKY DNA-binding protein 23; Swiss-Prot: sp|O22900|WRK23_ARATH Probable WRKY transcription factor 23; TrEMBL-Plants: tr|A0A0L9TXK4|A0A0L9TXK4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0243200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:55189959..55195025) extracted from Lotus japonicus Gifu genome v1.2.

GGGAAATTAATTTTAATTGATTTAACGCCGTTGGAATCCAGAACGTGGCAGTGTATGCGGAACCCCGTTCACACACACAG TCAAACACCACGTATGAAAGCGTCGACCATGCATTCACAATGTCACCGGCCCAACGTTCTCCGTACCAGTCAATCACCTA CAATTGCCGGTCAAACTCTCCGTGTCCCTTCCATTCACACAAACACAAACACCTTTCACTTTCTTGTAAGCTTAAAACTA CACACAACCCTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTAGCTATAAACCTCTCTCTTCATTTCTCACCTT AGAGATTGTGTTTTTTGGAATGAAGGATTTGGATTTGTGTATTTGAGAAATTATCAGCTAGCTAGCAATATGGAGAAGAA ATCTAGTACTAGTACTGTGAAGACTGAGGATGTGGTTGGTTCATCTTCCTTCCCTTGTTACAATTCTAGTGCCTTTCCAT TTTCCAATGGATTTGATTTTTCTGAGGTGGAGAAAAGCTCTTTAGGGTTTATGGAGTTACTGGGTCAGGGTGTGCAGGAC TATGGTTCTCTGCTTGATTTACCACAACTCTCAACTATGCCTAGTACTGTGTCTGTGCCTCATCATCAGACTGCTACAGT GAAGGCTCCATCTGATGATGCTGGGAAAGAGTGTTCTTCTGAGGTGTTGAATCAGCAACCTGCTACTCCTAACTCTTCTT CGATTTCATCGACATCAAGTGAGGCAGTCATTAATGATGAACAGAATAAGACTGTTGACCAAACAGAAGATGATGAACAC AACAAGACCAAGAAACAGTGGGTTTTTTTCTTCTCTTTCTATTTATTTAACTTTTTTATCAAAGCCATCTTTTGTTTTGT ACAAATTGGTATTTTTTTATTTTTTTCCCCAATTTCTTCTTCTTTTTTGTGTTTTGTTTTAAGCTTCATTTCTCAAAGGC TAATTTCATAGCATGGTATGTGAAGAACATGTTTTGTGGTAGTATGGCATAAAGCTAAGTACGTGTTATTATATCTGCTT TTGCTTTATGTTGGAAAGGGAAGCTTGTTTCAGGATCAAATTAGATAAATGAATGTGATGGAGTTGCTTTTTGTTTTTTA CTATTTGAGATACAATACAATACTAGTGGTTAATTTGATGGATTCTGGGATCTGCTGCTGGTTGTTGTTTGGTTCAGGTT GAAGGCAAAGAAGACAAATCAGAAGAGACAGAGAGAACCAAGATTCGCCTTCATGACCAAAAGCGAGGTAGATCATCTCG AAGATGGATATAGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAATAGCCCCTTTCCAAGGTACTAACAATGCTTGCTT GCTTTTAATTCTCTAATCACAAACATATGTTATAAAGTACTATTTCTACAATATTCAAAAGCCAAAATGAATTTTGAAGA AGCTTTTATGAGAAGCTTATGAGTTTTCTTATTAGTTTTGCTTCTTTCCCTTATAAACTTGTTAAATTAATTTGGGCAAA CTTATGATCTCATAAATCATGTTTTTACTACTACTAACCGTTCATATATTTTGTTTACAATATCCTTCTTATGTGTTAGA ATTAATTTATAGAGAAATTCTTTTGGTTTCCGAAACCAGATTTTTCTTAGTACACAAACAAGCTGTTAAGTGTTAACATT TGTGTGTTTTTATACAGGAGCTATTATCGTTGCACCAGTGCTTCATGTAATGTGAAGAAACGTGTGGAGCGATCCTTTAC TGATCCAAGCATTGTGGTCACAACCTATGAAGGCCAACACACACATTCAAGCCCGGTCATGCCTCGGGCAGGCTTCGGCG GAGCTCCGATACGGCCAGGTTACTCCACCGCGTGTGGCGCCACTAACTTCGGCTCAGTTTTGCAAGGAAACTACTTGTCC CAGTATCAGCACCATCCCCACCAGCACCTTGTCAATACGCTGTCATCTCTGCAGGGTTTCCCTTACTCTGATTCTCCATC TTCAAAAAACGCTGCTTTTGTTACTCAAGAGATGCAGCAAGCGACTGCATTTCTAATGGACCATGGGCTTCTTCAAGATG TTGTTCCTTCACACATGTTGAAAGAAGAGTAGATGATATTGATAAGTAAAATAACTGATCCATTGCAGGTTCTTTCATGT GGCTTAATTTTTTGCTGACTTTTTTCTAGGTAAGAAAGAACTAAGAACTTTAGTACTAGTAGTACATGTAATTTTTGTTC ATGATATGACTGATAGAGTGATAGGTGGTAAGATTAGTGATCATGATCATCATACTTGTAAATTCCACTTTATCTTTTTT TGCACGTAACCATCATCATCATTATTATGGACTATTATTACTATTATTTATTACAATTAGTATTATTATGATCCAATATT GCAGGGACTGGTTCTGGTTTCTTCCTCAGTCACGTCTCTAACTGGTTGTTTTAATTGCTTCAGTATTTGAGCTTTCCGTA TAGATCCAAAAGAAAATGAAAGAACATAGTTTCTCGTTGGTGGGTTTGGGTTTGGGGCAGTGTGTGAAATGATTAAAAAA AGCAGTTTTTGATCTTCTGATTTCTGACTCTTCCTTTGTCTTGTGTTTTTGTTTCTATTTGGTGGAGGAATGTGCATTGA TTTCACAGCAGTGAAGATTGTTAGGTTAAGGAACAATTGGTATGGAAACAAAGACCCATAACCAATTATAGTTAAAATGC TTTTTTAAAATTAGAAGAACACAGTGGGTGAAAACTGGAGCTTTATCCTAATATGGGGTGCAGGGTTATAAATGGGAAGG GAAATTCAACCACTCTGATCCATTTTTAGCTGGGTGAGTAAATGCCCCTGTGTATTCTACACGCTATCAATGCAATACAA AAATAAAAAGAGAGAAGAAAATAACAAAAGGAGAAAAAATGATACAAGCTAAGAATATTAATTTAGTGTGATATGGTCAC ACTGTGTGTGATGTAATTGATAGTATTTGATAATGACTCATGTGTGAGCTTCTTAAAGAAGGCATAGAGACAGGTGGTAC TTGTTATTAAGCTTTGGTGTTAATTGAGCAGGTGAGAGATCACTCTAATCGTTATGAAGAATAATTGAAGTTTCAAAATT TAATAGAGATATATAGCGCGTTCAGGGATGAGGGGATGCATTGCATGCCAAGTTGCCAATACATTGTTTAGAAGTTATAT ACGACACGCCACCATCAAGGAAATTAATCAATGGGGTCTTGTTGTCTCTTTCAGTTGAGTCTTATTTTTTTATACGCTTT CGTTTTCTATTTTCTTTAACGGTAAAGTGGCAGATACATTGCATTGAGATTAAATACTTCACCTGTTTAGCATAGTATAA AGTAGGGTATAATATCACTTCTTTTCTTCCAAAGCTAAAATGGTGTTTTAAATTGCCTTTATTCTTCTTCTATTCCTGCA CCCCAATGGCAAATAAATGTCATGTATTGCGACATGCTTGCTTACACGATTAGCAAACTAGTATTGCTTGAAAATTCAAG CATGAGTTGAAATCTCCATTAAATATGAATGAGGTTTATAAAGGAAGTAACATATGTACAAAATATCTAAAATTGATATG ACATTAAGTTAGACTTATTCTCAGTCTCCCAACACTAATATCTAATCAACCAGAAATTTAGCATGCAATTATGGGGTTAG GATAAATTAGACAAATCATTTCATTATTAAGATAAATTGTGTTTTCAATTTTTAGAAGCGGATAACGAATCTAAAATTTG TGGTGCCTAACGGTGGAACCACATTTCTTTTCATGCTTTGTGGGCTTCATATAGTTTGTCATTGTCATTCATCTGTCATC TATGAGCGTTACAAATAGAAGAATAAAAACCCAAAGATTCTTTTGATTTTTTTAATGGGTATCAGATATCAAACTAATGG CTAAAGCCACGGTAAACAGCGCCTAAAAACCAATGTCCATCAAACCTAATGAAAGCAATACAACATATAACACTATTTTT TTTTTGTCAAATGTTCATAGTTCATTCATAACCTAAGGGTTGCCTAACGACACTTACAACATGCGGGAATAAATCTCAAC GAGCGATATCGCAATGCAAAACATGAGCAATTTAAGTACAAGAAGCATGCACACTCAAACATAAAGCTGAAACATCCAGC ATAAAACATGATGTAAAAACCCTAAGGGCCATTCAAAAGCCCCTAAACCCCAAAATACCAAAGAGCCTGATTGACTTCTG AGCGGAGAAGTTTCAATCTTCAGTTTTAACCGGCGCTCCCCAAATACAACTCACTCGGCTCTGTCGTAGTTGCAAACAGT CCGCTATCGGGAAAGCCCAAGAACGGCTTCAACAGCACCAACAGGGGGACAATCCAGCATCTCTGAGAAGTGAGGGGATA ATAGGAAGCTTTTGTAGATCTGGAACAGGGAGTGGATGGAGCCAACAACAAGAGTGTGATAACAGCAAGCCAACCAGGGG AGTAAAGGAAGAGCACGCAGAGGACGACCCAAACCCTACTTCCACTTCCTCTTCAAAACAAAACAAAACCAAAGCTTTCA CTTTTCAACCCAAGCTTTCACCTTTCTGCCCAGATCTCTGCCTGAAAAAACGAAGAAGAGGATGGCCTCAGATCTGGGTT GCGGCGGCAGCCTGTGTTGCGGTGGCTCTTACGACATCTCAGACATTGAGGTGGTGGTCGAACCTTCTCAGCACTGGATC TGCAGCAAGGCAAACGTTGGCAGATGGAGGTGGGAGAGGCGGCCAAGGTGGAGGGAGGGATGAAAAGGGCAGAGGCTATG GTGGCCAAGAGGATCCAAACAAAAACTAAGCAAAAAACCCACTTATTTAGGTAAGCAAATCCACCTAATGTGGAGAAACA CCCACCTGTTGTGGGAGAAAGACCTACCTAAAGCAGGAAAAGAGCCTCCCTAGAGGAGGAGAAGCTTTACATGCACCAAA GTTGCTATAAATTTAAAACATACACCGCAACACCCTACCAAAGTGTCCCATGAACAAAATAAAACTGGCTTGAATCCATG AAATGAAGCAGGCCTTACAAAAAAGGT
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0243200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGAAGAAATCTAGTACTAGTACTGTGAAGACTGAGGATGTGGTTGGTTCATCTTCCTTCCCTTGTTACAATTCTAG TGCCTTTCCATTTTCCAATGGATTTGATTTTTCTGAGGTGGAGAAAAGCTCTTTAGGGTTTATGGAGTTACTGGGTCAGG GTGTGCAGGACTATGGTTCTCTGCTTGATTTACCACAACTCTCAACTATGCCTAGTACTGTGTCTGTGCCTCATCATCAG ACTGCTACAGTGAAGGCTCCATCTGATGATGCTGGGAAAGAGTGTTCTTCTGAGGTGTTGAATCAGCAACCTGCTACTCC TAACTCTTCTTCGATTTCATCGACATCAAGTGAGGCAGTCATTAATGATGAACAGAATAAGACTGTTGACCAAACAGAAG ATGATGAACACAACAAGACCAAGAAACAGTTGAAGGCAAAGAAGACAAATCAGAAGAGACAGAGAGAACCAAGATTCGCC TTCATGACCAAAAGCGAGGTAGATCATCTCGAAGATGGATATAGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAATAG CCCCTTTCCAAGGAGCTATTATCGTTGCACCAGTGCTTCATGTAATGTGAAGAAACGTGTGGAGCGATCCTTTACTGATC CAAGCATTGTGGTCACAACCTATGAAGGCCAACACACACATTCAAGCCCGGTCATGCCTCGGGCAGGCTTCGGCGGAGCT CCGATACGGCCAGGTTACTCCACCGCGTGTGGCGCCACTAACTTCGGCTCAGTTTTGCAAGGAAACTACTTGTCCCAGTA TCAGCACCATCCCCACCAGCACCTTGTCAATACGCTGTCATCTCTGCAGGGTTTCCCTTACTCTGATTCTCCATCTTCAA AAAACGCTGCTTTTGTTACTCAAGAGATGCAGCAAGCGACTGCATTTCTAATGGACCATGGGCTTCTTCAAGATGTTGTT CCTTCACACATGTTGAAAGAAGAGTAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0243200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEKKSSTSTVKTEDVVGSSSFPCYNSSAFPFSNGFDFSEVEKSSLGFMELLGQGVQDYGSLLDLPQLSTMPSTVSVPHHQ TATVKAPSDDAGKECSSEVLNQQPATPNSSSISSTSSEAVINDEQNKTVDQTEDDEHNKTKKQLKAKKTNQKRQREPRFA FMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSFTDPSIVVTTYEGQHTHSSPVMPRAGFGGA PIRPGYSTACGATNFGSVLQGNYLSQYQHHPHQHLVNTLSSLQGFPYSDSPSSKNAAFVTQEMQQATAFLMDHGLLQDVV PSHMLKEE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF038130
1 328 328 2.1E-119
IPR017396
PANTHER
PTHR31221:SF170
25 305 281 3.7E-92 –
PANTHER
PTHR31221
25 305 281 3.7E-92 –
MobiDBLite
mobidb-lite
71 155 85 - –
MobiDBLite
mobidb-lite
95 126 32 - –
MobiDBLite
mobidb-lite
127 142 16 - –
Gene3D
G3DSA:2.20.25.80
155 231 77 4.7E-33
IPR036576
SUPERFAMILY
SSF118290
162 230 69 3.27E-29
IPR036576
ProSiteProfiles
PS50811
165 230 66 31.743
IPR003657
SMART
SM00774
170 229 60 3.2E-40
IPR003657
Pfam
PF03106
171 227 57 9.1E-27
IPR003657

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0243200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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