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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0247900 |
| Transcript ID | LotjaGi5g1v0247900.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein; TAIR: AT3G16850.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|I1L7S8|I1L7S8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0247900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55665704..55669917) extracted from Lotus japonicus Gifu genome v1.2.
TGCCGAGCTGGCTTTTTCCTTTATAGCCGTCGCTTTCAATTACCTCCCCCGTTTATGTTCTTGTTTTCTAGTACTTGGTT TGGTTGGCATTGTTATACCAAGTACCACTGCTTCTCTTCTTTCTCTTTGCTCTGTCCTCATGTTCTTCTTCTACTCCTAG TCCCAGTTCTCTTCCCTCTTCTTCACTCCCTCCTCGCCCCTCGTTCCTTCCCTTCTTCTCGAGGTTGCTGTTTTCACCTT GCTGGGACTGAAGAAGAGGGTAAGATACCATGAAGAGGCTAGTAAGTAGTACGTTCTCTACTACAATTTTCAGACAATTT TTCACTGTGGGGTTCTTTTGTTTTCAAATTCTGTTGTAGCCTGCAAAGTTTTTTTTCCAACCCTCACAATTGATTGATGT TGATGTGGTTTTTGTAGTTATATTGTGTTATAATGTCTGAGATTTAATCATAAATGAATGGCATCACCCTCCCTGAAATC AAATCTTGCAAACAATTTTGTAGGATCATATTTAGATAGGGATTAAGCTGTGGCCAGTTGATTGGGACATTGTCCTGTCT CACAAAATGGGTCTATGGATCTTTTTAGTAACATTCATGATTTATTGCATTCTCCTGGCTTTCTAACTGGAAATCTTCTA TTAATGGGTTGCTAGTTTGAATTACATGTTAATTTTGGTTTTTGATAATCCTGTTTATGATTCTTGTAACTCTAGTATTT ATCCTTCAGTATCTCTAGAACATGTTTTGGGAAATTATATCAAGCTTAATTAGTTTGCTTTGAGTATAGCTGGTTAACTG TTATGTTGTTTCAATAGTATTCCTGGTTACTCCTTTGGGAAAATGTGAAGTTTTCACACCTTTGATATCAAGTTGCATCT TCTGTCTGTTTGTTTTTGTAAATTATTTTATTTTCCTCTCTAGAGTCTAGCAATGAGTTGGTTCTCTGGGCCATAGGTAA AATCTCTTCTAGCCAAGGCTGAAATGGAATATTTGTTATACTTTTTTATTGTTTGGAAGTTTTTATGATTTGCCTGATTT TAAATTTGATTACATGCTCAGTGTTGGTCTCCAGATTGCATGTCTTGCAGTTTTTATGAAGTCCTTTAAAGTTTTTCCTT TTCTTTTTTCCTTTTCAGGTAACTGTGCTTTTACTTATAGCATTCAGCACTGCTCTGGAAAGCAATGGGGATGATCATGG ACCATGTAAGAAAATTACATTGGATCCTAGGCCTCACAGCGTGTCAATATTGGAGTTCGGGGCAGTTGGGGATGGAAAAA CATTGAATACAGTTGCATTTCAGAATGCAGTTTTTTATGCCAAGTCCTTTGCTGACAAAGGTGGAGCTCAACTGTATGTT CCATCTGGAAAATGGCTTACTGGAAGTTTTAACCTTACAAGTCACCTCACTCTCTTCCTTGAGAAAGGCGCAACCATCAT TGCATCACAGGTTTTCATATTTAATTTTAGTCCTCTTTCAATTAACTTGCTTATTTCTTATAAGAAACTCCAAGGAATAC CATACAAATTTGTTTCTTGCACCCTTTCACAACTGTGTCAAGAGAAGTTCAATCATGATGGGAAATTCATGTAGTCGATT TATTTGGCATCATTTACTACTTTCAATCAAATTTATGCCATACAAACTGTGCGGAATGATAAGGTTCGCCTTAATCATAT CTGCATCCTAACCAATAGCGTGTATATACAAGTAATGCAGAAGGGAAAATGGAATCAACTTTTATTGTTGGTCTCTAAAC CTTGCCTACTCTTGTTATCCTGCCTATCAGTCACCTGTCTCACTTCTGGAGCATGAAAATTGTGTGATTTTTCTGCAACC TACAGAAGCAAAACTATCTATGAAGATATTTATGGAAACACCAATTTTACTCACTATGGAAAAGTTTTTACTTATGCCTT TTGTTTTATATAATTTTAGGATTATGCGCATTGGAGTGTAGCGGATCCCCTACCTTCTTATGGCCGAGGAATTGATATCC CAGGTGGGAGATATCGTAGCTTGATTTACGTAAATAACTTAACTGATGTGGTAATTACAGGCAAGGATATTCTTTCATTA CAATAGATTCTTATTTGAAGTTTCTCTCATAGGATGCGCATTGCTTTGTTTCCATACTCAAATTCATGTATTTAATTAAT GCATCAGGTTATGATGGAACTATTGATGGCCAGGGTTCTGTCTGGTGGGACCTAATCAGTACTGGTGACCTAAATTATAG CAGACCACATATCATAGAACTTATTGGTTCTGATAATATCACAATCTCAAATTTGACAATTTTAAACTCTCCTTCTTGGG GAATCCATCCAGTATATTGCAGGTACATGTAGCTCATGTTTGTGGTTCCTGACTAACTTGTTAAAAATGGAAGTGTTCTG CTTTATATGAATCCTCTTTACACAATCCATGCAGGTACGTTCAAATTCATAACATAACAGTGCATGCACCGCCTGAATCC CCTCACACAAGCGGAATAGTTCCAGGTAAATTCAGAAGTTGTTAGTTTCTACTTTACTGTTTGTTATAACACAATCTGTA TCTTTGAACTGTGAACCTTTTAGCAAACTGAATTTTTTATTTGGCAAGCTTTAAGGGTTCTAAGTATGATTAAAGAAAGA ATACCGTTCTCAATTCTCGTTCCCTTTCACAAATCTTCTGATTTTTTTGAAACTCAAGTGTTCATGATCAACATGTGGTT TAGTCTTGTAGTGATAGTTTCATGTACATTGATTTGCTTCAAGGATGCTCTTTTTCTTTTTTCATTGTGTGCATTATGGA TCTCAATCATCTCATTACAATTTTCAATTTGCAGATTCTTCTGAGTACATTTGCATTGACAAAAGCAATATTAGCACCGG TCATGATGCAATCGCGTTGAAGAGTGGTTGGGATGAATATGGAGTTGCATATGGCAAACCAACCTTGAATGTCCACATTA GTAGCGTTTACCTACAATCATCATCAGGTGCTGGATTAGCATTCGGAAGCGAGATGTCTGGAGGCATATCCAATATAATT GCAGAGCAGGTTCATATTATCAACTCAAAAATTGGTATTGAACTGAAGACAACTAAGGGTAGAGGTGGCTACATGAAAGA CATTTTGATTTCCGACACAAAATTGGAAAACATTCACTTGGGTATCGGCATGATAGGAGACTACGGTTCCCATCCAGATG ACAAGTATGATCCTAATGCAATGCCGGTTGTCGGTAGCATTACTTTTAAGAATGTGGTTGGTGGAAATGTTTCTATTGCT GGGAATTTTTCAGGGATAGTTGATTCGCCATTCGCACCTATCTGCCTATCAAATGTGACTTTTTCTATCAGTTCTGAGTC ATCATCACCTTCATGGTTCTGTTCTAATGTAATGGGTTTCTCTGAAGAGGTGTTTCCTAAGCCATGTTCTGATCTGCAGA GCTCATATTCAACAAACATTCCCTCTTGCTATTCCTACCAGCATCATCCGTCATCTAGTTATGTCTCGAGCGTGTGAGAT CACCGTCTCAAAGTCTAGTCATTCCTTTGATTCAACCTGTACATGTGACACAAAATTCATATTTCATCAAGAACTACTTC ATTACAATTTTCCAAATAAAAGGAAATTCTTGATTTAAAATTGTTCTTTCTCTTCAATGAACCTTCCTTTGTCTGTCTAT GCAAAGTGTCTAGAGTGGTGTCAATTCCAAATAGTACATTTGTGTACAGCCTCAATTTCTTCATTCATGTACAAGAAATT TTTGATGTTGGTGTACAGCCTAAGACTATTTGCTTTCAATGTATAATTTGGAGTTCTATGTTGCTTGGTTGTCCATATGG CTTGGCTTTGAGAGGGTGTGTAGTGTGCTGGTTTTGACAAAACTAAGTTTTCTTTGCATAGTTTTTATGTTCGATTAATG ACTTAGCTATGGTTGTCCATCATGTATAATGTGGTTTTATGTTTTGTTTATTCGTTTTCCTGATTTTCTTGATATTGCAT AACCATACATGTGGATGATATTTAGTATGAATGGATCTAGTTATCTCGAATTGACTCTGACAGTTACAAGCCTCTTACAA AAGTTTCTTCCCATAGTTGATTTTGCCTTTAGAATCAATTACAAAAGAAGAATATGAAACATGCTTATTATTAACTTTGA ATTTTTGTACATTGGTTTTCCTAATTTTCTTGATATTGCATAACCAAACATGTG
CDS sequence (LotjaGi5g1v0247900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATTTAATTAATGCATCAGGTTATGATGGAACTATTGATGGCCAGGGTTCTGTCTGGTGGGACCTAATCAGTACTGG TGACCTAAATTATAGCAGACCACATATCATAGAACTTATTGGTTCTGATAATATCACAATCTCAAATTTGACAATTTTAA ACTCTCCTTCTTGGGGAATCCATCCAGTATATTGCAGGTACGTTCAAATTCATAACATAACAGTGCATGCACCGCCTGAA TCCCCTCACACAAGCGGAATAGTTCCAGATTCTTCTGAGTACATTTGCATTGACAAAAGCAATATTAGCACCGGTCATGA TGCAATCGCGTTGAAGAGTGGTTGGGATGAATATGGAGTTGCATATGGCAAACCAACCTTGAATGTCCACATTAGTAGCG TTTACCTACAATCATCATCAGGTGCTGGATTAGCATTCGGAAGCGAGATGTCTGGAGGCATATCCAATATAATTGCAGAG CAGGTTCATATTATCAACTCAAAAATTGGTATTGAACTGAAGACAACTAAGGGTAGAGGTGGCTACATGAAAGACATTTT GATTTCCGACACAAAATTGGAAAACATTCACTTGGGTATCGGCATGATAGGAGACTACGGTTCCCATCCAGATGACAAGT ATGATCCTAATGCAATGCCGGTTGTCGGTAGCATTACTTTTAAGAATGTGGTTGGTGGAAATGTTTCTATTGCTGGGAAT TTTTCAGGGATAGTTGATTCGCCATTCGCACCTATCTGCCTATCAAATGTGACTTTTTCTATCAGTTCTGAGTCATCATC ACCTTCATGGTTCTGTTCTAATGTAATGGGTTTCTCTGAAGAGGTGTTTCCTAAGCCATGTTCTGATCTGCAGAGCTCAT ATTCAACAAACATTCCCTCTTGCTATTCCTACCAGCATCATCCGTCATCTAGTTATGTCTCGAGCGTGTGA
Protein sequence (LotjaGi5g1v0247900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYLINASGYDGTIDGQGSVWWDLISTGDLNYSRPHIIELIGSDNITISNLTILNSPSWGIHPVYCRYVQIHNITVHAPPE SPHTSGIVPDSSEYICIDKSNISTGHDAIALKSGWDEYGVAYGKPTLNVHISSVYLQSSSGAGLAFGSEMSGGISNIIAE QVHIINSKIGIELKTTKGRGGYMKDILISDTKLENIHLGIGMIGDYGSHPDDKYDPNAMPVVGSITFKNVVGGNVSIAGN FSGIVDSPFAPICLSNVTFSISSESSSPSWFCSNVMGFSEEVFPKPCSDLQSSYSTNIPSCYSYQHHPSSSYVSSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 281 | 279 | 6.6E-68 | ||
| Pfam | 6 | 275 | 270 | 3.9E-34 | ||
| PANTHER | 7 | 307 | 301 | 3.2E-149 | – | |
| PANTHER | 7 | 307 | 301 | 3.2E-149 | – | |
| SUPERFAMILY | 8 | 293 | 286 | 2.57E-63 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi5g1v0247900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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