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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0248200 |
| Transcript ID | LotjaGi5g1v0248200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal protein L19; TAIR: AT3G16780.1 Ribosomal protein L19e family protein; Swiss-Prot: sp|Q9LUQ6|RL192_ARATH 60S ribosomal protein L19-2; TrEMBL-Plants: tr|I3SBE6|I3SBE6_LOTJA Ribosomal protein L19; Found in the gene: LotjaGi5g1v0248200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55688295..55694831) extracted from Lotus japonicus Gifu genome v1.2.
GTCTCTGTCTTTGTCTCGCCGTCTGATCTAAGTCCCTCGCCGGAAAATTTATTGCATTTGGTCCTCATCTTTGAAATATT TTTGGGGCAGATCCTCGCCGGAGGGCGGAGCTCCAACGAGTGCTTAAATGGCATGATGACTGTGTTAATAATGCCTACGT GGAATTAAATAAAAAATAAAAAAATATAACACATCAGAAAAATTAATTTGATTAAGAAAATTAAATTAACAATTCCCTTA ATCTGAAAATAATCTCCCTAATCAAAATAAACCCAAAAATCAAAATCAACTCCCAAAATCCCTAAATCTGAACCAACCAT CCAGCTTCTTCCTCATCACCTCCTCCTTCGACTTCAGCTTCTTCCTCATCACCACCAACCACTAGCCAATGCCCACCCCT ACCAAAACCCCAACGGCCCAACCCCCTGCAACCGGAACTCGAAGGAAGATCTGGATCTGAGTGCGACGGAGGATGAAGGA AGAAAATGAGAGCGAGATAGCACGGGTTTTAGAGTGCGACGGCTGGGTGCGACTGAGGACGATTCCTTCGCCATCTTCAA CGCAAACCCTAACCTTGTTTTAGATCTCGGTGAGGTGGGTGGGGGTTATGAGTATTAGGTTCAAATATGGGCACTGCAAA GCAGAACAAATGCCATGATTGTTGTTGTTGCTGCTGATTCTGTCTGAAGTCTATTCCCCCTTAACATCTTGTCTGGCGAT GGAGAATATTGAGTGGATTTCGAGTGCATGATGGATGATTTGGTGAAGGTTTTAGTAGCTTCCTAAGTTTTTGATCTTTG AGTATTTGTGGGTGTTTTGATTTGGCTTATTTTTGGGTGTTGGGGTTGAGGGGGTGCAGGTGAGGGTGAGGTTTGGGGGT AGGGTGAGGTTGCAGCATCCTACTGAGTGCCAGAGGAGGTGGTATCAGACCATTCAGAATTTGTGATTACAGAAACCGAA TCACCTTCTTCATCATTACTGTCCTCCAGAAGCTATTTTTTCCAATTCCTGTAGTCGGTGGTGGTCCATTACCTTCTTCT CCGGTTCATGGGTGATGGTGGTGGTTGCTTTGTTGAGAACCTGTGAGAAATTGGAAATCTGATACAGGAAATTTGGGTTT GAGGGATTTAAATTGGTGATTGGAAATGAGGATTGTTGTTGTTGAGCGGAGTTTGGGTGAAGGTTGTTAAGCAACAGCAT GGTGGAGAAGAGTTGGAGAATTCTGGTGGTGAAGTTGAGAAATTGATTGGGGAAAAAGGGAAAATTGGAGAACCATGGTG GAAATTTATGGGTTTCATAGAACGAAGTAGAAGATTGTAAAGAACAAGGTTTTGAATAAGATTTTGATTCTGGGTTTGAA ACTCAGCGATGGGGTAAATTGGGATAAGTTTGGGGGGATTTAATTTAGTTGATTAGATTAGGGTTATAATAAGAAAATTT AATTTAATATTATGATGTGTTATTTATTTTTTATTTTTTTTAATTCCACGTAGGCATTATTAACACAGTCATCATGCCAT TTAAGCACTCGCCGGAGCTCCGCCCTCCGGCGAGGATCTGCCCTAAAAATATTTCAAAGATGAGGACCAAATGCAATAAA TTTTCCGGCGATGGACTTAGATCAGACGGCGAGACAAAGACAGGGACCAATATAACGCTTAACCCTAAAAAGAATTATGC ACCTGGAAGTATTGAGGAACTCATGATTTTGGTTCACCTCTTAATTCGACGGAATAAGGGTGAAACTGCTCTCTATCGGA TGGTAGTCCAGGTAAACTGTCTAATATGAAAACAATTTATATATCATCGGATGAGACCAGAGTCTTCTCACTAAGCATGG TTAACTGGTTCAACCCATCATAGTCTAGTTAATAATAAAAGTCTAACTTATCATCCATCATAATACATGTAAAATAATTA AATTAATAATTCACATAAGAAAGCAAGAAAACTAAGGCACTCCTACAAAGTCCTTAAGCAATGAAGTCTCTAACTTCGGA TGAGGATTTTCATGAACATAATTGTGACACTCGGGGCCTACGAGGGCGGGGAGTAATCGTCGGTGCAGTGAGACACTGAC AAGGAGCGGTTCTTGGCAGGCTTCTAGGCGGAGGGACACATGAATGAGCCGATCTCGCTCCCGAACAAGAGGTATTCTGA AATTGTATATGTATGAGACTATGCAGTTGAGGAGTGCATAAAAGATTTGATTGGTACTACTCATAACAACAAGATGCATC TTCTTTTCGGGAGCCCAACTCATAAAAACTTCAAGGTTAAGTGTGCTTGCCTTGCAACAATATTATGATGGGTGACCTCC TGGGAAGTTTTCCCAAGAAGTGCGCGAGTGAGGACAAAGTACACCGAAAAAACTCGTGTTGTTTATGTGACTGTGAGGTC AGTCGCCGAATCGGGATGTTACAATAATACATATTAACAACCAAACAAAATATATTATAATTAATTGATAATGTTAATCC ACATAACAAAAGAGAATTATAAATAAATATAACACTCATAGGTTGAAAGTTTGATTCCTAGGATCTGCACTCTATGACTC TTTAAACACCTAGCTTAGAGTGTGATTTTTTGGACGGTGCTATGAAAAATGATTTACTAGGAGAGACCTATCATTTAATG TGGTCTTTGATGAGTTTCGAGACGATTAGCTCATACTGTCAACTGTGGGATATCATGAACAAACTATTTATCATCCTACA AATTCTCCTGTGAAACAAAAGGAGACATCAGGACACGAGAGGCTGGAAGCTCTGATCCGGTGGTTGTGCGCTATGATATA CTTTGAATCGCTCGCCAACAATATGATTTGATCTGGCTGGAACCTCTGATCTCATGCTATGGCCACCGTTAAGTGAAGGC TATGAACCTCTGATATGTGAGAGAAAGTTGAGAATGAGTGGAAAAGATAGAAAGGGAGAGTCTTTGAGGTGAGGAAGGCC GGAACAATGAAAAGAAGGCAAAAACAATGAGAAAAGAGGCGGAAAGGGTGGTGGCTGAGGCTGAAAGGGGCAACTGCAGA GAGGGAGAGTGAGGCACCGCCGCTCCTTTCCTAGGGTTTTTGTGTGTATTAGGATGAAGAGAATTAAAAGAAAAGGGAGG GTGAGCCACCGTCGCCCTTTTCCTACGATTTTTGTGTGTCTTAGGATGAAGAGAGTGAAAAGAAAAGGGAGAGTTAGATT TTAGGAAGATTGAAGATAGAGTTGGTGAATTATGACTTGATCAACAAGTCGTCCTTTTAAACGAGAGATAGACTTACGAC TCGCTCAGCTGATTTCGAGACTGTTTAGGCTCAAAATGATCGGTTATGATGGTCGAGTTTTTTACCGTTGTTTTTAGTCT CAAAAAGTATATATTTTTTCAGCTATTTTGAACTTTTCCTCGCCTTTTTTTATGGGTAGATTGAGGCCATTTTTTTCAAT TTTAAAGGATGTTTTGGCACCAAAATAAATTTAAAAAATGTTTATTTTTACACTATAGATAACACATACATTGTAATTTT TTCACACAATTTTTTTACTGATCAACATTGTAATGTCATCATTCTAAATTTTCATTGTGTTCCAGATCAATATTGTAATC CTATTATTCGAATGTACTAAATTAATATTGTAATCTTACTATTCTAATACTATATCAATATTGTCATCCTATTACTCTAA TGTAAAATTTGTTGATGTAAAAATATCTATTTTGAAAAGAGTCGTTGTTAAACTATACGTTGTGAAAAGGGTCATTGTAA AAAATTTCGTTGTAGAAAAGAATCGTGGACTCGTGGTAAAAATTTGTCATCAATCATGAAGCAATTATATGAGACTGGAA AATATCAAATTATGATCTACACTGTTCAACACAACCTATAAATAGGTAGATTCCTTAAACATTTAATCCAGTGTATTCAA AACAATTGATGTTTATTGTTTCGATTTTTTATCTAATAGTTTGATGCATAAAGCAAAAGCTTATTTTGTTTTTGTTAAAA AGCAAAAGATGTTAATATATCAAAATGTTTTTTTGGGCTTTACAAGTAGGCCAGGCAGCCAAAGGCCCAGCAAGACAGTC AAATTATCTTGGGCTGCAAGCACACAAAAAAAAACACAGAAACAAAACCTAGGGTTTGTTGAGTGGGAGATATATAAGGT GCCGCCAAGTTCCAGTGAACGCGTATCGAACCGGAGGGAGTGAAGGTAAGGTAAGGGAGAACGATGGTGTCGTTGAAGCT TCAGAAGCGGCTCTCCGCCAGCGTTCTCAAGTGTGGTAGGGGCAAGGTCTGGCTTGACCCTAATGAGGTCAATGAAATCT CCATGGCCAATTCTCGTAAGCACTCAACACTCTCCCTCTCTCTATGTTCATTTTTACTGTTCAACATGTTTGCAACCGTT TGATTCATGAGCTCATAGTATTCGATAGATCATGAAATGTTTTTTCTAGCAAAAACATGTTTGTTTCATTTCTGGTTTCT AAGCTATGTTTAAGGTTTTTCATTAGATCGAGGATTGATGATTGTTTTTTGGGGTTGTGGTCTGATTTTGTATTATGCTG TAAATAATGATTGAATTTTCATCATTTCTGGGTTATTTGTGATATCTGAATTTGCTGTTGAATCATTTGATGATTTTTGC TCATACTGTGGTAGAAGGCTAGTCATGTTCACTTTATATGATTTTTTGCAATTGCACTGCTTAGCTTTGTGGATTTTGGT TTGCAGGCCAGAACATTAGGAAGTTAGTTAAGGATGGCTTCATTATCAGGAAGCCAACTAAGATTCACTCTCGCTCTCGA GCTAGGAGGATGAAGGAGGCTAAGAGGAAGGGACGTCACTCTGGATACGGTACTTGACTATTTTTTACCCTATAAGGATA TTCGTATGAGATGAATATGCAGTTGTTTGATGTTTGCATAAACAACTCTTAGCTCCTAAGCTGATGCTTTTATGCTAGCT TTTTCTATTTTCACTACTCATCGAAGAATTTATGTCACTCTTCTAAGTCCACTTTTAATGGGAAAGTCCAGTGTAATTAT TATGGAAGATAGTATAGGCTGCACAGGTTGTTAAGAAGTCAAAAATGTGTCCAGAAGAATATTGCTTATGTTGTCATGGC ATGTATTGTGCTGTGGTTGTTGTGGGAAATGATGGTTTGATAGCTGTAACTTCAATGGGAATAGACAGTAGTCCACTGTA ATACTGCTCAAGTTGTTATGGAGTCTAAAATGTTCACAAAATATTGCTTTATGGTCAGGGCATGTATTGTGATGTGGTTG TTGTGGGAGATGATGATATGATGACTATAATTTTTGCTTACATTTAATAGGTAAGCGCAAGGGTACCAGAGAGGCAAGGC TTCCCACCAAGATCCTTTGGATGCGGAGGATGCGTGTCCTCAGGCGTTTGCTTCGCAAGTACAGGGAGGCAAAGAAGATT GACAGGCACATGTACCATGATATGTACATGAAGGTGAAGGGTAATGTGTTTAAGAACAAGAGAGTCCTTATGGAGAGTAT TCACAAGTCCAAGGCTGAGAAGGCAAGAGAAAAGACTTTATCTGACCAGTTTGAGGCTAAGAGAGCAAAGAACAAGGCTA GCAGGGAAAGGAAAAATGCTAGGAGAGAAGAGCGCCTTGCCCAAGTAAGTTTGGGGATGTTTTGAGAATATATACATGTT GATATAGTGGTTTTGTTGCATTTTCTTAATTGCACCTGGCAATTTACAACCCTAAGAAGAATTGTAACTTATGTCTGGAT TGAGGAATTTGACCCTTCCTCTGTAAAATTTGTAGGGTCCTGGAGAGAAGGCTGCACCGGCTGCCCCAGCTGCAACAGCA GCCCAGCCAGCCCAGTGAGTAACATTTGGGTTTACTTTTCACATTTTTGTTTAAAATTTTCACTATGTTGTGGTCTAAAT AAATATCTTTTTGTGCAGAGCAACTAAGAAATCCAAGAAGTAAGTCACATCCGGAGATTTGAAGGTGTAGAATCTTTTAT GAGGCTGGCACCCTGAGTTACTGGGCTTATGTAGTTTTGACAAAGTTTTTGATTTAGACCGTGTTAGTTTAATTTTGAAC TTTATGTTAAGTTGTACATGTACAACTTGTATGTTGGCAATTTGTTTTTGCTATACCTGGTAATTTTGCTATACCTGTTT TTGTGAAATACTTGCTATTTTTATTTCAGCTATGAAGTTTCTTGTCTAAATTCTGAATCATCCCTGCAAAACCCATAATA ATTCCTCCATAAAATTTTACGAGATGCAAATGCCTAATGTGCAATATCCTGACAGTAATATATATTGAGTTTCTGGTGAG GTTTCATTAAGATGAGGGATTTCTCGCAGAACTTGTCTGCATGCTCACGAACACCCTTGTGAAGTTCTACTCTTGAAAGA CTACTGCCACATCTAATTTTGTGTACTTTACTCTTGAAAGAGTACTGTCACATCTAAATATCTAATTCTTATATATTCCC CACTATTCATGGTCTCTTGCCTAAATTATCAACTGCTACCTACCCTTTGTGCTATCA
CDS sequence (LotjaGi5g1v0248200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTCGTTGAAGCTTCAGAAGCGGCTCTCCGCCAGCGTTCTCAAGTGTGGTAGGGGCAAGGTCTGGCTTGACCCTAA TGAGGTCAATGAAATCTCCATGGCCAATTCTCGCCAGAACATTAGGAAGTTAGTTAAGGATGGCTTCATTATCAGGAAGC CAACTAAGATTCACTCTCGCTCTCGAGCTAGGAGGATGAAGGAGGCTAAGAGGAAGGGACGTCACTCTGGATACGGTAAG CGCAAGGGTACCAGAGAGGCAAGGCTTCCCACCAAGATCCTTTGGATGCGGAGGATGCGTGTCCTCAGGCGTTTGCTTCG CAAGTACAGGGAGGCAAAGAAGATTGACAGGCACATGTACCATGATATGTACATGAAGGTGAAGGGTAATGTGTTTAAGA ACAAGAGAGTCCTTATGGAGAGTATTCACAAGTCCAAGGCTGAGAAGGCAAGAGAAAAGACTTTATCTGACCAGTTTGAG GCTAAGAGAGCAAAGAACAAGGCTAGCAGGGAAAGGAAAAATGCTAGGAGAGAAGAGCGCCTTGCCCAAGGTCCTGGAGA GAAGGCTGCACCGGCTGCCCCAGCTGCAACAGCAGCCCAGCCAGCCCAAGCAACTAAGAAATCCAAGAAGTAA
Protein sequence (LotjaGi5g1v0248200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK RKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE AKRAKNKASRERKNARREERLAQGPGEKAAPAAPAATAAQPAQATKKSKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 210 | 210 | 6.4E-133 | ||
| PANTHER | 1 | 210 | 210 | 6.4E-133 | – | |
| Gene3D | 1 | 56 | 56 | 3.8E-31 | ||
| SUPERFAMILY | 3 | 144 | 142 | 2.62E-62 | ||
| SMART | 3 | 146 | 144 | 2.3E-95 | ||
| Hamap | 3 | 149 | 147 | 20.37 | ||
| CDD | 4 | 167 | 164 | 6.14337E-74 | ||
| Pfam | 4 | 146 | 143 | 6.1E-65 | ||
| ProSitePatterns | 7 | 26 | 20 | - | ||
| MobiDBLite | 57 | 79 | 23 | - | – | |
| Gene3D | 57 | 189 | 133 | 1.9E-58 | – | |
| MobiDBLite | 57 | 85 | 29 | - | – | |
| MobiDBLite | 144 | 210 | 67 | - | – | |
| MobiDBLite | 144 | 184 | 41 | - | – | |
| Coils | 158 | 181 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. | ||
| Cellular component | Cytosolic large ribosomal subunit | The large subunit of a ribosome located in the cytosol. |
Expression pattern of LotjaGi5g1v0248200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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