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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0248500 |
| Transcript ID | LotjaGi5g1v0248500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pollen Ole e 1 allergen/extensin; TAIR: AT2G47540.1 Pollen Ole e 1 allergen and extensin family protein; Swiss-Prot: sp|Q9LZJ7|PRP3_ARATH Proline-rich protein 3; TrEMBL-Plants: tr|A0A151U4I1|A0A151U4I1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0248500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55705297..55707371) extracted from Lotus japonicus Gifu genome v1.2.
AATCATTTAAGATCTCTATAAATACCCAAGGCATTGGTGAATCAGTAGCTCACCACTACTTTGAAAGCCTTTCTTTATTA CAAAGAAACTCACAATGGCTTTTCTTCAATCCACCTTTGCAACCTCCATCTTTCTTTTTGCATTACTAGCCATTGCTTCT GCAACTGATTATTATGGGGATGGTCAGACACAAAAGTTAGAGAAACCCAAACCTGAAACAGATTACAAACCACAGCCAAC AAAACCAGACTATGAAGTCCCCAAACGAAAAGGAGAAGGTGAAAAGCCACACTTACCAGCAGCACCAAAGTTAGAGAAAC CCAAACCCGAAACATATTACAAATTACCACACCCAACAAAACCAGACTATGTCATTCCCAAACCAAAAGGAGAAGTTGAA AAGCCACAGTTACCAGCACCCAAGTTAGAGAAGCCCAAACCAGAAACATATTACAAATTACCACACCCAGCAAAACCAGA TTATGAAATTCCCAAACCAAAAGGAGAAGGTGAAAAGCCACAGTTACCAGCACCAAAGTTAGAGAAACCCAAATTCAAAA CAGGTTACAAAGCATACCCAACAAAACCAGACTATGAAGCCCCCAAACCCAAAGGAGAAAGTGAAAAGCAATTTCTGCCA ACAGTTATTGGTGTCCAAGGCATTGTTCTGTGCAAATCAGGCTCTAATTACTTCCCAATTCAAGGTAACTTTATTAAAAA GGCAGTATAGTCCACCTATGAATCATGTTATTACAACTAGCATTTGGTAAATCTTCTTTACAATATGCTTTTCTTATGTG CTAAAATTTATTTGCAGAGAAACTCTTTTAATCTGTGAACAATGTTTTTCTTGGTCTGATCATGAAATGATTCTTCCTAT TTTTTTTTCAAAATTTCTCACAGCATGTGTTGTCACCTGTGAATAATGATCATTATAGTTTTAAATTGCGATTGCGATCC TTTAATAGCATTTAACATGTTACAGGAGCTGTGGTACGAGTTACATGTGGATGTGTTAGTGAACTTGGATATGAGTCAGG CCCTATATCAGTATGGAGTCATGTAACAGATAGTAAAGGCTATTTCCTAGCTAAATTGTCACTTGCTGAGCTTGGGTCTG AATTGAAGTTTACTGAATGCAAAGCATACCTAGAGAGTTCTCCATTAGAAAACTGTAAAGTTCCCACTGATGTGAACTAT GGAATCAGTGGTGCTCGCCTTTCTTCTTATCGCCTCATTGACAATAAGACCAAGTTGTACTCCGTGAAACCTTTCTTCTA CACATCTCAACCTAAAGTACCAGTCCCCAGTGGTTACTGAAACAGTTTCTATTGACATGAAATGGCTGCAAAGTTGAAGA ATGCTGTTTTCTTGTTTTTGTTTTCATTTGTTGTGTTGTTTTTTTTTCTAATTCTTTGCTATGTATTGATTTCACAATTC GTTGGTTGGAGGAATTGGTGATGGCTTGAAGCCTCCTCCCCTTTAAGAGATTTACTATGTCATATTTTAATACATTGTTC TGATATTGATATCAGCATCAACATATATATATAAAGTAAGGTTCTGAGCCAACCGTTATTCCTTCAGATCATATGTAAAT TTGATCTTAATTAGATTTATGTCAAGGTTCGGTAGGGTTTTAATGTTATATTTATTTAAATCAGAACTCTTACTTTTTTT TATTAGCAACTAGAATTCATATGTTCCATGATGAGTACAGTTGGTACTCAAACTCATTCATCGACTTACATCCCAATGGA ATACAACACCACTACCTGTTAAGCCTTTTAAAGACAACAAACTCGCTATAAAAACTCAAGGCCAAAAAGGTCACATTGTT TCTACTTTCTACCAATCCAGGTTTCCCAAAAGACAGCAAAAGCAACATAAAGCTACACATAATCTAAACAAGGAGTGCCA AACATATATGTATTATTAAACCAGAACATGTGAACACAAGAACAGGGCAGAGGAGCACTTAAACCCTACCATTTGATGCA TTCATACCAGATTCTTGAGGCCGTTGGGACAAATTAGAACTCTTAATACTAAGCAGAAAATGATAATCAACATGG
CDS sequence (LotjaGi5g1v0248500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTTCTTCAATCCACCTTTGCAACCTCCATCTTTCTTTTTGCATTACTAGCCATTGCTTCTGCAACTGATTATTA TGGGGATGGTCAGACACAAAAGTTAGAGAAACCCAAACCTGAAACAGATTACAAACCACAGCCAACAAAACCAGACTATG AAGTCCCCAAACGAAAAGGAGAAGGTGAAAAGCCACACTTACCAGCAGCACCAAAGTTAGAGAAACCCAAACCCGAAACA TATTACAAATTACCACACCCAACAAAACCAGACTATGTCATTCCCAAACCAAAAGGAGAAGTTGAAAAGCCACAGTTACC AGCACCCAAGTTAGAGAAGCCCAAACCAGAAACATATTACAAATTACCACACCCAGCAAAACCAGATTATGAAATTCCCA AACCAAAAGGAGAAGGTGAAAAGCCACAGTTACCAGCACCAAAGTTAGAGAAACCCAAATTCAAAACAGGTTACAAAGCA TACCCAACAAAACCAGACTATGAAGCCCCCAAACCCAAAGGAGAAAGTGAAAAGCAATTTCTGCCAACAGTTATTGGTGT CCAAGGCATTGTTCTGTGCAAATCAGGCTCTAATTACTTCCCAATTCAAGGAGCTGTGGTACGAGTTACATGTGGATGTG TTAGTGAACTTGGATATGAGTCAGGCCCTATATCAGTATGGAGTCATGTAACAGATAGTAAAGGCTATTTCCTAGCTAAA TTGTCACTTGCTGAGCTTGGGTCTGAATTGAAGTTTACTGAATGCAAAGCATACCTAGAGAGTTCTCCATTAGAAAACTG TAAAGTTCCCACTGATGTGAACTATGGAATCAGTGGTGCTCGCCTTTCTTCTTATCGCCTCATTGACAATAAGACCAAGT TGTACTCCGTGAAACCTTTCTTCTACACATCTCAACCTAAAGTACCAGTCCCCAGTGGTTACTGA
Protein sequence (LotjaGi5g1v0248500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFLQSTFATSIFLFALLAIASATDYYGDGQTQKLEKPKPETDYKPQPTKPDYEVPKRKGEGEKPHLPAAPKLEKPKPET YYKLPHPTKPDYVIPKPKGEVEKPQLPAPKLEKPKPETYYKLPHPAKPDYEIPKPKGEGEKPQLPAPKLEKPKFKTGYKA YPTKPDYEAPKPKGESEKQFLPTVIGVQGIVLCKSGSNYFPIQGAVVRVTCGCVSELGYESGPISVWSHVTDSKGYFLAK LSLAELGSELKFTECKAYLESSPLENCKVPTDVNYGISGARLSSYRLIDNKTKLYSVKPFFYTSQPKVPVPSGY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 308 | 308 | 4.5E-68 | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 308 | 308 | 4.5E-68 | – | |
| SignalP_GRAM_NEGATIVE | 1 | 21 | 21 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 314 | 291 | - | – | |
| MobiDBLite | 31 | 149 | 119 | - | – | |
| MobiDBLite | 32 | 84 | 53 | - | – | |
| MobiDBLite | 93 | 149 | 57 | - | – | |
| Pfam | 187 | 279 | 93 | 4.3E-18 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0248500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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