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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0248600 |
Transcript ID | LotjaGi5g1v0248600.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Pollen Ole e 1 allergen and extensin family protein, putative; TAIR: AT2G47540.1 Pollen Ole e 1 allergen and extensin family protein; Swiss-Prot: sp|Q9LZJ7|PRP3_ARATH Proline-rich protein 3; TrEMBL-Plants: tr|I3TAG1|I3TAG1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0248600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55708550..55709583) extracted from Lotus japonicus Gifu genome v1.2.
TATAAGGCCGTCTTCCTTTAATTTGAGAAATCAATCAACCTGTTTTCAACGTTACATTAGACATGAAAATGGCCTCTATC CATTTCTTCGTTCTGTCTTTCATGCTTTTCACATCCCTGTTTCTCACAGGTAGTTTTGCAACCGTTGGTGACTATGGCTC AGAAGAAAATGTCACCAAGAAACCAAAATTGGAAGATGGAAAACTTCTATCCAGCAACATTGCAATTCAAGGCCTTGTTT ATTGCAAATCTGGCTCTAAACTCATCCCACTTGAAGGTAATTATTTTCTTAATTTGCATAGTGTGTTGTACCACATAATT AACGTAACATAGCCATAAACTAATAAACATGATTATTGGTGTGTTTGTTTGATATTCATATAGGGGCTTTGACGAGGATA ACATGTGTGGCTGCTGACGAATATGGATTTGAAACGACACCATTGTCTTTCTTAAGTGAGGCAACCGATGCCAAGGGCTA TTTCCTTGCAACGATGTGTCCATTGGATGTTGCAGAAAAACGGGTACTGAAGGAGTGCAGAGCTTTCCTTGAAGCCTCTC CTTGGAACAATTGCAGTGACCCCTCAGACATAAACAAAGGAATTAGTGGTGCTGTGCTTCATTCCTATCGCTTCCTCCAT GACAAGAACATGAACTTGTACACCGTGGGGCCTTTCCTTTTCACCTCTTCCCCTTAATGAATCAATTTTAGGAAGAAAGC ATATAAATATGTATTTGGGAGAGACTCAATATTAGATTATTGATTTGGAAAATTACAAGTGTACACCATTAATTAGGTGG TTATATATCTACCTAATTTTAAAGTGAAATGAGATGCAGGTTTGTTTACCCTTTATTTCAATCATTTCACTTATATAAAT AATTTTGAGTTAACAATATGGATGGCTTTGTGTGTGCAATTTCGTTTGGCTTTAGTTAAGATCTTATTTCAAGCCTTGGT TTAGTAGAGATTCCTTTTCAACCATCCATTTTACCCATAATTTGTTCTCTAATCTAAGAATGTGTATCGGCTTT
CDS sequence (LotjaGi5g1v0248600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAATGGCCTCTATCCATTTCTTCGTTCTGTCTTTCATGCTTTTCACATCCCTGTTTCTCACAGGTAGTTTTGCAAC CGTTGGTGACTATGGCTCAGAAGAAAATGTCACCAAGAAACCAAAATTGGAAGATGGAAAACTTCTATCCAGCAACATTG CAATTCAAGGCCTTGTTTATTGCAAATCTGGCTCTAAACTCATCCCACTTGAAGGGGCTTTGACGAGGATAACATGTGTG GCTGCTGACGAATATGGATTTGAAACGACACCATTGTCTTTCTTAAGTGAGGCAACCGATGCCAAGGGCTATTTCCTTGC AACGATGTGTCCATTGGATGTTGCAGAAAAACGGGTACTGAAGGAGTGCAGAGCTTTCCTTGAAGCCTCTCCTTGGAACA ATTGCAGTGACCCCTCAGACATAAACAAAGGAATTAGTGGTGCTGTGCTTCATTCCTATCGCTTCCTCCATGACAAGAAC ATGAACTTGTACACCGTGGGGCCTTTCCTTTTCACCTCTTCCCCTTAA
Protein sequence (LotjaGi5g1v0248600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKMASIHFFVLSFMLFTSLFLTGSFATVGDYGSEENVTKKPKLEDGKLLSSNIAIQGLVYCKSGSKLIPLEGALTRITCV AADEYGFETTPLSFLSEATDAKGYFLATMCPLDVAEKRVLKECRAFLEASPWNNCSDPSDINKGISGAVLHSYRFLHDKN MNLYTVGPFLFTSSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_GRAM_NEGATIVE | 1 | 26 | 26 | - | – | |
Phobius | 1 | 7 | 7 | - | – | |
SignalP_EUK | 1 | 26 | 26 | - | – | |
SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
Phobius | 1 | 26 | 26 | - | – | |
PANTHER | 5 | 175 | 171 | 6.7E-75 | – | |
PANTHER | 5 | 175 | 171 | 6.7E-75 | – | |
TMHMM | 7 | 29 | 23 | - | – | |
Phobius | 8 | 21 | 14 | - | – | |
Phobius | 22 | 26 | 5 | - | – | |
Phobius | 27 | 175 | 149 | - | – | |
Pfam | 55 | 147 | 93 | 1.6E-16 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0248600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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