Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0254300 |
| Transcript ID | LotjaGi5g1v0254300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain-containing protein; TAIR: AT3G10490.2 NAC domain containing protein 52; Swiss-Prot: sp|Q84K00|NAC78_ARATH NAC domain-containing protein 78; TrEMBL-Plants: tr|A0A0B2NZQ2|A0A0B2NZQ2_GLYSO NAC domain-containing protein 78; Found in the gene: LotjaGi5g1v0254300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56321815..56327998) extracted from Lotus japonicus Gifu genome v1.2.
CTGTTTTAAACCAACACAAACACACAACCTTTACTTTTCCGAAAAACCAACAAAGATTAAGAAAAAAACACACACACACA ATCCCTTGAAGTGTGAGAGTATAAGAATTTCTTGTCATTGAAGGTACCCTTCATTTGTTGCTTGACACTCAATCAAACAC CCCATCATTTTCTGAAGCCCTAATCGCCACACCCTTTTGCTCCCTCCGCCACCCACATGGGTCGCGAAACGCAGCTGATT CTAGCCCCACCTACCACCACCACCACCACCACTGTGGAACCCCAACCTCCGCCGCCACCACCACCACTGGCAGCTCCTTC TGCATCAGCTTCAGCTGCTGCTGTTGCTGCTCCTCCTACCTCTCTTGCTCCTGGGTTCAGGTTCCACCCTACTGATGAGG AGCTTGTTATCTATTACCTCAAGCGCAAGGTTTGTGGGAAAAACTTTAGATTCGATGCCATATCTGAGGTTGACATCTAC AAGAGTGAACCCTGGGACCTTGCGGGTTAGTCCATTTTCTTCTGATTTTACCATTTTTTGAAGCATTTTTTGAAGCATTT GTAGGGTAAAGATTGAATTTTTACTAGTTTTTGTTTCTGGGTATGTTTGGTTTTGGTTCATTTGAGTAACCTCATTGGGG GTTTTCTGTATGAGGGTTTTCTGTTGATGGGTTTTCTGTATGAGGGTTTTCTGTTGATGGGGTTTCTTTTGTCTGGTTGA AATTTCATGGGGTTTTGATTTTATTTGAAGGCCTGATTTTTTTAACTTGTGGATGGTGGTGGTTTGGATGTTTGTTTTGC AGATAAGTCTAGGTTGAAGACCAGGGACCAGGAATGGTACTTTTTCAGTGCCTTGGACAAGAAGTATGGGAATGGTGGCA GAATGAACCGGGCCACGAGCCAAGGGTACTGGAAAGCAACTGGGAATGATCGCCCGGTGAGGCATGGTCAGAGGACTGTG GGGTTGAAGAAGACTTTGGTGTTTCATAGTGGCAGGGCACCGGATGGTAAGAGGACAAATTGGGTCATGCATGAGTACAG GATTGTGGAGGAAGAGTTGGAGAGGGTTGGGACTGGATCCTCTCAGCCTCAGGTTAGATTATAGAAATTTTATAGAGATT AAAGTGGGATGAGCCCAAGGTTTTATAAATTGCGGCTGCAGGAACGGTCATGTGATTGGTCCTTTGTATTGCAGAAAATT GTGAATAAACATGGCTGTCGTGACCTAGAATCATGGTCGCGTTGCGGTTTCGGAAATCTCCAAAACCTTGACGTCACGGC CGAAATCTAGGTCATAGACCTTGTTTTAAAACCATGGTTGAGCCTGAACTGTATGATTTTATGCTGCTTCCCTGTAGCAA CTAAGGGTTCTCTTCATTTCCATGTTGATAAAAATAAGGAGATTAGTTTTATATGGTTCTCCAACCCAAATTTTGTGTCA CTTGATGCAGGAGTTTATACCTTGTTCTTTAGTAAATGTGGAAAAAATATACTTTGATATGTACTGCAATTTGGACATTG TTACTGTATTGATTTGGTTAATCATTTTTGTGCATTTCTCTGTTGGATGGAGAAGGATGCATATGTCTTGTGTAGAGTAT TTCACAAAAATAACATAGGACCACCAAATGGGCAACGGTATGCACCCTTCATTGAGGAAGAGTGGGATGATGATGCATCG GGATTGGTTCCTGGGGTAGAGCCTGTGGGTGACGGTTCTGTTGCTCGCCATGCACGTGTTGAAGGCAATGGTGTTTCATG CAGTGAAGGGAGAAATGATGTTGTGCAGGTTTGTTCCCTCTCAAGTTTATTTGTTTTGGTTGTATCTTTGTCATCAATAA TTAGTCTTGTGGATTCACTGAAGAATATATTTATTGATGCTTTACATTTAATTTATGCATGACCGTTGAATATTTGAGAA AAAGTTAAAAAGTATATGACAATACTCAATCCAGAGTAAAAAGATCACTTTGCTGATGGATTGGTAATCTTGGCAGCATT TTTTATTTACGTAGTTATTTTGCGTGTTCCTCGTTAAGGAGGACACTTATCTCCCGAGCTCATTGTATTTTCTTCTTGTC TGATTGATGTTTTTTTTTCTTTTATAATAAATACTAAAATTGATAGCTGGAATACACAATTTCAGTTTAGCATGTTCATC ACGTGTCAGTTGTAGATGTGCAATAATAACGCTAGTGCTTCTTGATCTTTCTATTTCTTCCCTTTTTCCCGGGATAGGCG GTGAATACTAATATAATAAGTGAAGTAGTCTTTGTCATACTAATTGGCTCGGAGACCAGACCGTTTGTGCCAGCCCGTTC TGTCTCGCTCTCGCCTTCAATGGAAGGATCGGCTTCTCTGAAGTCTGCTCTTAGTAAGCTTACAATTTCTGAGGGAGAGC TAGTAAGAACCATGCTACCCCATTAGTTACTCCAAGTTACATTACTATTTTTTCTCATTTCACTCTATCTCAGTAATGAT GATTTTTTCTTTTTTGAAAACAAAAAATCACATTCCCACAATTACTAGGGTTTTGGGTAACATGTCTTAAATACTAATTA ATACAATGGATCTTGTTATTCCCTTTTCGAATCTCTTTCGAGTGATGCAATTTTTCATCTTTGCTTGATCATTTGGCTCT CATTAATGGGTGATTGCTTTTTCTCACCTTTTGTACTTCTTATCTTTGTATAGCTCTTGCAATGTCGAAGCTTGCTTTTT CTAGCTTGACAAACTCGAACCATGATGTGTGGCTCAGTTGGCAAAACAAAAAATCACATTCCCCAAATTATAAGGATTTT AGGGACTGAGTGTCTTAAATACCAATTAATACAATGGATTCTGTTTCCCTTTCCAAATCTCTTTCAAGCGATGTGATTTT TCATCTTTGCCTGATCATTTGGTTTTCACTAATGGGTGATTGCTTTTTCTAACCTTCTGTACTTCTTATCTTTGTATGGC TCTTGCAATGTCAATGACTGCATTTCTAGTTTGACAACCTAGAACCATGATGTGTGGCTCATTTGGCAAGACAAAAAATC ACGCTCCCCACAGTTTTAGGGCTTTCGGGAATGTGTCTTAAGTACCAACAATTCAATGGATTTTGTTATTCCCTTTCCAA ATCTCTCCCAAGTGATGCGATTTTTCATCTTTGCCTGATCATTGCCTGATCATTTAGCTTTCTTTAATGGGTGATTTCTT TTTCTTACCTTCTGCGCTTCTTAACTTTGTATTGCACTGTCGAAGATTGCATTTTCTAGCTTGATAACCTAGAACCATGA TCTGTGGCTCAGTTGGCAAACTAAGCCTCATGTGGGTGGAATTCACATCTAGTGTAATGGTTTGAAATCCACTGAGTGCA CTGTGCAGCCAGGGCCAACTGGTGCCTAGGTTATATGGCATACTTGCAATGATAGCTTGTGCAAATTTTCAAGTGGCTGG GTATCAATGATGATTATATAGCTCCAAAAGTATTTATTGACTTTTTATTTCATGGTGATTGTTAACAAACGGCCAATAAA TACTTATCGACAGACCTGGGTATCAATGCCTTGGGGAAAAAGTTGGATTCCAAACTAATGACCAAGTCAAAACTTTTCTG AAAAGTATTCTATCTCCAAAGTAAGGGGATTAGTAAGTTCTTTCTTCTTTTTGCCTCTTTCAGAGAAGTTCTTCATGCAT CATGGAATTGGTAAGTTTCAACTTGGTTGGGTCACACCATTTTTTCAACATTTTGAGGCTTTAGGAGTTGTTGTAAGATA ATTGGGAATGATGAGTTATCATTGGATCTTGTCAAGTATTAAGGGATGTGCTCTATATTGTTTTGCTTTGAAGTTCTGTC ATTTAACCCAAAAGAAATTAGCTACCTATCTGGTTTAATATAGGATTGTCCTGAAATCCAAGCTCCTTGAATTGAATTGA CATGTACACATCAATAGCATAACTGAGGCCCTTTCTATTGATACAACGGAGATACGGGTTGCAAAATGATAGTGAGGGAT GATATATGAGTAGAAAGTTTGACTGGAAAGGTAAGAAAGATTAGTGTTGTGTCTTCTGATATAACTTGTAGGATTGACTG ATCTCATGAGGCACCACTGAGCCATGAGGAAAGGGGGAAAAATCAGCCCCTGTAATTAAGCTTAGTAAGTGTTATTTAGA AAATTGATTGTTGAGTTGTTGTGGAAGCTGCACTGCTCTTCTAAGCTTAGGTGAATATGCTGTCAGGATGCAGTGAGTAC TGTACTAAAATTTCATTTTGATTCTGATATGAGATATCTTACTTTGAAGTAATTTGTGCATTCAGCTGAATTATCATTGC TTGTTAGTTACAGTTTGTGAAATAGTAGGTGAAGTAATTTGTTTGTTAGACAGCACTAGTATCAAGACAAGTTAGAGAAC CAAATGGTTCATTGGATATGATTGGGATGACATTGATTATTGAACTATTGTTGACTGGAACAAGGCAGTTCATTGGTATT GTTCATTGGTGTTCTTTTATTTTATCAATAGAATTTGTGGTGTTGTTGCTTCTATTGATCCTTCTGCAATAGCAAACGGA CCTAGTGACACAGAATTGGAGGAATTGATCACCAAAAATGCTGGGTTTCCAAGAACAATGATATTTTTATAGAACACTGA ACTAATGCATAGTGTATTCAAGTTCACTCAATTTGAAGTAACAGTTTTATGGTGAGATTAGGTCTGTTGGATAATTTAGA GTTTAAACTGTTTATGCTGTTATTGATGTAACTAATAGAAAAATCAGCTCCTGCATTGTTGTGTTTCTATCTGCCTGACT TATTTTATGAATCATTCATTGGCTTCACTTTTCAGTATGTTTATATCCTTTCAGGACACTCAATCTATCAATAAAGCTCC ATTTGATGTGACCAACCTTCCCATTGAAACTCAAAATCTTATAGCTGTGTGCAAGAGGGCGAAGATGGATGAGTTCCCAT CACCAGAAAAAGACGATTCTAAGCAGATGCAAATGGATGAGTACCCATCCTCCCAAACTGATAATCCAAAACCCTTCTCT CAAATTTACAAAAGAAGGCGCTATAACTTGAACTCCAACCATTCTCATGCTTCTGGAGATTCAGTCCAAACCAACCAGGG TCCATGCTCATCCACCATAACCACCGCTGCAACCACACTCCCAACAACAACCACCACCGAAGCAGCCACCAACCCTGCAC CGAAAAAACATTTCCTGTCTGCACTGGTGGAGTATTCTCTGCTAGAATCTCTTGAATCAAAGGAAAGTCCTGTCTCGATT AAGCCAGAGGATTTGGATGCAGCACATCCGACTTGCACTAAGTTCCTCAAACAGATGCAGAGTGAGATGCAGAAGCTCAG TGTTGAAAAGGAGACTATGAGGTTCGAGTTAATGAGTACTCAAACCATGATTAAAATTCTCCAGTCTCGCAATGACGTGC TCACCAAAGAAAATGAGGAGCTGAAGAGGATGATGGGAAATCCTTAGGCAATGGCAGTGCCATGCCCCTTGTGTGTAACA TCAGTTATGGTTAAAGTTATAGCTGAGTAATGGTGCTCAGTCCCGGATATCTAGTAGTTTTTTTCTGAGTAAACATTGTA GTTCTTTTCTTTAGCTAGACTTGTCAATTGCATGCATATTTAAAAACTTGTCATTCTGTAGCTTATGACTTCAAATTTCC CATTGTTGAAAATGACCATTGTAGGTGTATCTCTTCTTGTGTTCCTATGTTTTTCATTTTATGCAATGGTAGGTGATCCA AGACCTCGTCGGAATTACTCAAAACTTTTCACAAGAATCCAATTTTAGTGGCTTTTTCTTGCCTGTTTGTGAATCAATAG ATTAGCAACCCAATCTGATTTTTAACTGAAAGTTCAATGGGAATGAGTTGAAAAAAATAGAAGTTGGGATTACTTTTAAC TGTTTGTGTGTTTTGTTCTGCTTGAAAGAGTTTACACTTGAAAGGATTCAGGTCCTACTTCTCTTCTAGGTTATCATGCT TTGAATTATGTGTCCACTGTCAATCTGCTTTAAACCAACCAAGTTAATGTTTGTGGTCAAATAATTTTTTCCTGCAAATT CCATCTCTCTTAATGCAGTTGTGTCATGAATTGGCCAATCTTGTTTTCTATGTTGTTTAAAATTCAATTCAAGTTATTTT TATAAGTGATTTGATTTCGTCTGA
CDS sequence (LotjaGi5g1v0254300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCGCGAAACGCAGCTGATTCTAGCCCCACCTACCACCACCACCACCACCACTGTGGAACCCCAACCTCCGCCGCC ACCACCACCACTGGCAGCTCCTTCTGCATCAGCTTCAGCTGCTGCTGTTGCTGCTCCTCCTACCTCTCTTGCTCCTGGGT TCAGGTTCCACCCTACTGATGAGGAGCTTGTTATCTATTACCTCAAGCGCAAGGTTTGTGGGAAAAACTTTAGATTCGAT GCCATATCTGAGGTTGACATCTACAAGAGTGAACCCTGGGACCTTGCGGATAAGTCTAGGTTGAAGACCAGGGACCAGGA ATGGTACTTTTTCAGTGCCTTGGACAAGAAGTATGGGAATGGTGGCAGAATGAACCGGGCCACGAGCCAAGGGTACTGGA AAGCAACTGGGAATGATCGCCCGGTGAGGCATGGTCAGAGGACTGTGGGGTTGAAGAAGACTTTGGTGTTTCATAGTGGC AGGGCACCGGATGGTAAGAGGACAAATTGGGTCATGCATGAGTACAGGATTGTGGAGGAAGAGTTGGAGAGGGTTGGGAC TGGATCCTCTCAGCCTCAGGATGCATATGTCTTGTGTAGAGTATTTCACAAAAATAACATAGGACCACCAAATGGGCAAC GGTATGCACCCTTCATTGAGGAAGAGTGGGATGATGATGCATCGGGATTGGTTCCTGGGGTAGAGCCTGTGGGTGACGGT TCTGTTGCTCGCCATGCACGTGTTGAAGGCAATGGTGTTTCATGCAGTGAAGGGAGAAATGATGTTGTGCAGGACACTCA ATCTATCAATAAAGCTCCATTTGATGTGACCAACCTTCCCATTGAAACTCAAAATCTTATAGCTGTGTGCAAGAGGGCGA AGATGGATGAGTTCCCATCACCAGAAAAAGACGATTCTAAGCAGATGCAAATGGATGAGTACCCATCCTCCCAAACTGAT AATCCAAAACCCTTCTCTCAAATTTACAAAAGAAGGCGCTATAACTTGAACTCCAACCATTCTCATGCTTCTGGAGATTC AGTCCAAACCAACCAGGGTCCATGCTCATCCACCATAACCACCGCTGCAACCACACTCCCAACAACAACCACCACCGAAG CAGCCACCAACCCTGCACCGAAAAAACATTTCCTGTCTGCACTGGTGGAGTATTCTCTGCTAGAATCTCTTGAATCAAAG GAAAGTCCTGTCTCGATTAAGCCAGAGGATTTGGATGCAGCACATCCGACTTGCACTAAGTTCCTCAAACAGATGCAGAG TGAGATGCAGAAGCTCAGTGTTGAAAAGGAGACTATGAGGTTCGAGTTAATGAGTACTCAAACCATGATTAAAATTCTCC AGTCTCGCAATGACGTGCTCACCAAAGAAAATGAGGAGCTGAAGAGGATGATGGGAAATCCTTAG
Protein sequence (LotjaGi5g1v0254300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRETQLILAPPTTTTTTTVEPQPPPPPPPLAAPSASASAAAVAAPPTSLAPGFRFHPTDEELVIYYLKRKVCGKNFRFD AISEVDIYKSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATSQGYWKATGNDRPVRHGQRTVGLKKTLVFHSG RAPDGKRTNWVMHEYRIVEEELERVGTGSSQPQDAYVLCRVFHKNNIGPPNGQRYAPFIEEEWDDDASGLVPGVEPVGDG SVARHARVEGNGVSCSEGRNDVVQDTQSINKAPFDVTNLPIETQNLIAVCKRAKMDEFPSPEKDDSKQMQMDEYPSSQTD NPKPFSQIYKRRRYNLNSNHSHASGDSVQTNQGPCSSTITTAATTLPTTTTTEAATNPAPKKHFLSALVEYSLLESLESK ESPVSIKPEDLDAAHPTCTKFLKQMQSEMQKLSVEKETMRFELMSTQTMIKILQSRNDVLTKENEELKRMMGNP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 39 | 39 | - | – | |
| MobiDBLite | 18 | 34 | 17 | - | – | |
| SUPERFAMILY | 41 | 205 | 165 | 5.23E-61 | ||
| PANTHER | 48 | 471 | 424 | 1.4E-124 | – | |
| PANTHER | 48 | 471 | 424 | 1.4E-124 | – | |
| ProSiteProfiles | 50 | 204 | 155 | 58.144 | ||
| Pfam | 52 | 177 | 126 | 3.0E-36 | ||
| Gene3D | 59 | 207 | 149 | 1.8E-57 | ||
| MobiDBLite | 297 | 324 | 28 | - | – | |
| MobiDBLite | 337 | 359 | 23 | - | – | |
| Coils | 422 | 442 | 21 | - | – | |
| Coils | 450 | 470 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi5g1v0254300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…