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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0254600 |
| Transcript ID | LotjaGi5g1v0254600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SJH1|I3SJH1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0254600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56353215..56355117) extracted from Lotus japonicus Gifu genome v1.2.
ATTTGAATGTGCATATCAGCTCCTTCCTTTATTATATTTAAGATTATATTAAGCTTTTTGTACCAAAAAATATTATAGTA TAAGTATTGGAAAATACTTTTCGGGACTAGGTTTTCTTTTCGTTTTGGATTTCTCCTCTGCTGGGCTGCTGGCCGTGCTG CTTCACCCGCCGTTTGCCCGCCGCCTTCCGCCGTCCTCACTCACGCAGTCGAGGTAAAGCCGACTCTCTCCCTCCAATCA CCATAATAGTAAATTACCAATACGTACACGTTTAATACACACATCACTGATTATACATGGCTGCATGTTGTAATATGCAT GCATGTCTCTATTGGATTTGAAAGTTTGGAACAGAGTGTTTAGTAATCTTAATTGCCGTTAATCTTGTTTTTTTTTTAAT TAAAACAGTGAGTTCAGCAAATCACTATTGGTTTTTAATTGTCTTTGCAGTGCATGACTATTGGTTTTGAATATAATTGT TTGATTGATTACATGGTGATAAACATAGATCACAATTTACCCTAACCATATCAAATTTTCAGTTAATTGTATCTTTAAGT TATCTTAATTATATATATCTTATGTGATCACACTTGTAAGGTTGTAAATTGCATTTTGTCTATCTCACTTTCTATTTTGT GATTTTGTCTATTTTCTCAAGAATATTGAAACTCATGATCATCATCTTCTACCTCAAGATTTGATAACTCAAATCCTGTT GAGGTTGCCGGTGAAGTCTCTTGTCCGGTTCAAGTGCGCATGCAAGTTATGGCGGTCTATCATATCCCATCCCCACTTTG CAAGCTCACATTTTGATCTTGCTCCTCCTAGACTCATATTGAGTTCCTTTGAAGCTATTCAAACCATGGACGTAGAGGGT GGATGGCGTCAGTCTTATCCTTTTTCTGAAAAAATAAATGCTGATTTTGTGGCTCCTATTCAAATTATGGGTTCGTGTAG AGGCTTTCTGCTATTGGACTGTGATGAAAGTGTCTTTTTGTGGAATCCATCCACACATGTCCACAAATCAATACCTTCAT CTCCTCCTGTTTATCCATATGGTTTTGAATCAAAATATGAGTTCTTGGAGACTCCTCAGCTATATGGTTTTTGTTATGAT TCATCAAAAGATGACTACTTGGTGGCTAAATTCTATGTTCGTGGTCAATCAGGTTCCTCACCACCTGCACATGTGCAGAT TTTCTCATTAAGAGCTAATGTGTGGAAATACATTGATTTCACTGATTTGCCTCACTTGAACCTATGTGAAGATTTTCTAA GACCCGGGTTGCTCTTCAACGGGACCATTCTTCACTGGTTGACTTATGATTATGATAAATCAATGAGTGTTATTATTGCC TTTGATTTAATGGAATTGAGATTTTTTGAGATACCCCGGCCAGATAATATTGCTCATGATCTTACATCTTGTGGTGATTT GTGGGTGCATGGAAGATTTTTGAGTCTATGGGTTTGGGGGAGTGATACAAATACAATTGATATCTTGGTTATGGAAAAAT ACAGAGTACAATCTTCTTGGACCAAGACTCTTGTTGTATCTTTGACACGCAGAGGAAAACACCTTCGCCCAGTATGCTCT ACAAAAAATGGTGATATTATTATGGCGAGTGAAAATGGATCAAAACTGGCCAAGTATAATGATAAAGGGAAACGGCTAGA GCATTGCGTACATCGTGATTATCGAAAATCCCAAGTGCCCATGTATACAGAGTCTATCATTTCACTCCCTAGTGTAACTG AGCAGAGCTCAAAATTCTGACTAGAATATCGGATGATGTTATTACTGGATATGCTTTTATGTTATTTTACTATTTCACAG TTAATTTGGTAAACACTTTTTTTAATCAACTAGCTTATCAGCAGCTGACTGCTGTCAATCAGA
CDS sequence (LotjaGi5g1v0254600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGTAGAGGGTGGATGGCGTCAGTCTTATCCTTTTTCTGAAAAAATAAATGCTGATTTTGTGGCTCCTATTCAAAT TATGGGTTCGTGTAGAGGCTTTCTGCTATTGGACTGTGATGAAAGTGTCTTTTTGTGGAATCCATCCACACATGTCCACA AATCAATACCTTCATCTCCTCCTGTTTATCCATATGGTTTTGAATCAAAATATGAGTTCTTGGAGACTCCTCAGCTATAT GGTTTTTGTTATGATTCATCAAAAGATGACTACTTGGTGGCTAAATTCTATGTTCGTGGTCAATCAGGTTCCTCACCACC TGCACATGTGCAGATTTTCTCATTAAGAGCTAATGTGTGGAAATACATTGATTTCACTGATTTGCCTCACTTGAACCTAT GTGAAGATTTTCTAAGACCCGGGTTGCTCTTCAACGGGACCATTCTTCACTGGTTGACTTATGATTATGATAAATCAATG AGTGTTATTATTGCCTTTGATTTAATGGAATTGAGATTTTTTGAGATACCCCGGCCAGATAATATTGCTCATGATCTTAC ATCTTGTGGTGATTTGTGGGTGCATGGAAGATTTTTGAGTCTATGGGTTTGGGGGAGTGATACAAATACAATTGATATCT TGGTTATGGAAAAATACAGAGTACAATCTTCTTGGACCAAGACTCTTGTTGTATCTTTGACACGCAGAGGAAAACACCTT CGCCCAGTATGCTCTACAAAAAATGGTGATATTATTATGGCGAGTGAAAATGGATCAAAACTGGCCAAGTATAATGATAA AGGGAAACGGCTAGAGCATTGCGTACATCGTGATTATCGAAAATCCCAAGTGCCCATGTATACAGAGTCTATCATTTCAC TCCCTAGTGTAACTGAGCAGAGCTCAAAATTCTGA
Protein sequence (LotjaGi5g1v0254600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDVEGGWRQSYPFSEKINADFVAPIQIMGSCRGFLLLDCDESVFLWNPSTHVHKSIPSSPPVYPYGFESKYEFLETPQLY GFCYDSSKDDYLVAKFYVRGQSGSSPPAHVQIFSLRANVWKYIDFTDLPHLNLCEDFLRPGLLFNGTILHWLTYDYDKSM SVIIAFDLMELRFFEIPRPDNIAHDLTSCGDLWVHGRFLSLWVWGSDTNTIDILVMEKYRVQSSWTKTLVVSLTRRGKHL RPVCSTKNGDIIMASENGSKLAKYNDKGKRLEHCVHRDYRKSQVPMYTESIISLPSVTEQSSKF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 17 | 293 | 277 | 1.9E-64 | – | |
| PANTHER | 17 | 293 | 277 | 1.9E-64 | – | |
| TIGRFAM | 28 | 260 | 233 | 5.7E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0254600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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