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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0255100 |
| Transcript ID | LotjaGi5g1v0255100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Shugoshin-1; TAIR: AT5G04320.2 Shugoshin C terminus; Swiss-Prot: sp|Q0WTB8|SGO2_ARATH SHUGOSHIN 2; TrEMBL-Plants: tr|K7N4H7|K7N4H7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0255100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56404797..56408099) extracted from Lotus japonicus Gifu genome v1.2.
GAATCACTGAACCCATTACAATTCAAATAATATTGATTGAAAATAATAATAATAAAAATAATTAATGGAAAAAAAAAAGG GGGGTGAGGGTTCAAAAAGAGGTTTGGAATGAGGTTCGGAAAGCCGTTTGGTGCTACTATTATTAATCTTCAAGATCCCA TTTTTGAGTTTCCCTCCCTTCAAACTCACAGCGACAGAGACGACGAAATGGACGGTGGCGCCGGCATCTTCCTCGACTCC GATACGGCGCGCGTCGGCGCTGTTGGAGGTAACACTACACTGCTTTCCCTCTCTCCTATCCTCTTTCTCGTTTCGCTATT TTCCTCTGCAATTTTGCTACCAACTCTTCAATTTCTAGCTATGCACTCTTATTAGGGTTTTCGAATTCCCCTCTTGTTCA CAAATTTCACTGCATTTCCGATCATTTCTACGCATTTACCACATTCCCTCTTGCTCTCACAACGAATTGTTACCCCGATT AGGGTTTTACTTGCTCATGTAGTGGATTTTAGTTCAATTCAGTGCTTGCTTGTGAAAAGTTAATCAATTCATATCTTAAT TTGTGAGTATAATAGGTTTAGATTCATCTGCTAGCTTAGGCTTCATAGTCGATACGAAATTCGATATGCAAATTTTTTGT TGGTGGGGGAGTGTGGTGGTTTGATGAAATGGGTTGTTGTTGTTGTTGCAGTTGCAGGTCAAAAAGCAAAGAGAGGGAAA ATGGTGAAGGGGGATTCTGTTTCTGTGGGAACTGCTCAGAAGAAAAAGCTGGCTGACATTACCAACCGGGACCAACAACA GCGACCCATTACTCAACAAGCAAACCAACAAGCTGCAACAATTGCTGCACCTGGCATCACTTCTGACCAGCTTCTCAATG TATGTAATTCTTGAATTGTTATATCTCTGGGCTTCTTATGGTTCTTGTCTGTATGTTTGCATCACTGATGGACATTTTGA ATTTGTTTCCCAGGAAAATGCAATGTTGATGAAGGTCCTAGCTAACAGAAAGTAATTTCTTTATGTAAATTTGGTCTACT GTTCTATCTACGATTTGCTTTCAATGTGATTATGGTGGTAATGCTTTTCGTTTACTGGGGTTTTCTCAACATGTATGGAC AGTGCGGTAATAGAATCATGTAAGGCAGAGCTACAGAAGTCTCAAACCAATTATCTGAGACTGCGGAAGGAAAATTCAGA ACTTGCGCTGACAAACACTCATATAATGGCGGTAATGACCAAATGTCTTATCCATCAATTTTTCCACTCTTTCTGAGAAT TCAAAGTTTTAAAACCTACGATTGCTGATTCTTGAATTGCTTAAATCTATGGATGCAATGCAGGAGCTTAATTCAAGTAA ACAGAGGGTGAGTCTTGAAAGCTGTTGGTCTGTGGTCCATATGAAAACACCTGCTGTTCTCTTTTTCTTTTTTCTTTTAT GCTATATTGAGTGATATTGAATTCGCTGCCTTCCAGCTAAGGGAACTTCAGCATGAACTAGGAATGAAGAATGGTATGCT CAGAGCTATGAAATTAGAATTGACGGTCAGTTTAACTCATCTCCTAGATGATGGATTGCACATGAGGAATTGAAAGGCTC AATTTTGTTTTTGACTGTTACATTTTTCTTTTCCTAGGCAAAAGAGCACACAGAAAAATCGAATCGGGAAATTGAAGCAA ACGAGGTCCTTCATAAATCTTCTTTTATTTTCTTCTGTTGTTTGGTCTTTATTCCAGCTCTCTGGCACTTCATAATTTTG TCCTTTACTTAACTACTTTAGGTCAAAGCATCTCACAGTAAGGAGTTAGATCAAACACTTCAAGAAGATGCCAGGGAGAA AACAAAAAGGAAGAGGGTGTCCAGATCTCAATGTAAGTAGTGTATTGGGCCAACTCTATGTGGTTATATGTACCGAATTA ATGTTGGTATCCTTTAAAGAAGTCTTCTCTCATGCAGCATCTGCACCTGCTGTCATTAAACAAGTAAAATCCATAGAAAA GGTTGAAAACAAGAGGTATGAGTTCCCTTGCTAATTGCTATACTTGACTTACGTCTGAAATTTTAAGTTGGACCCTGGGC TACTTAGGAACTAGGTAATTTATTTTGTCTCTTTTGCATATGCAAACAGGTATTCTTTGAGAAGGCAATCGGCAGGGTTG CAAGCTGAAAAATCACAACCAACAGAAGACTCTGAGGTAGCTCAAGTCAAATATGATGTCGCGCATTTACAAGAAAATTT GGAAAACGAAAATGGACCAACATCATCTGAAGTTCATGAAGAAGCCAAAGAAGATGCCGAATGTAATTGTAAAGAATTCA TCTTCTTTTGTTATTTTCTCATGTTATCAGTACTTTATGCATATTGTTTGCATTGCAGCTTCAGGACCAGCTAACACCGA ACAAGTTCATGCCAAAAAGAATATTGAAAATAAGAGGTATGGCTTGTATATACTTCCACTTTCTGACTGGATTTGAATGT CTGCTATTAGAGTTTTTGTTTAATTGAGAGAATTAGAAGCCTCTTAACATGTCTTGAGAATTATTGACAGGCAAAGTTTG AGAAGGCAATCTTCCATGTTCAAGCCTGAGAATCTAGAACCAACTGAAGACTTCTTTGAGGTAGATGATGCGAAATTTCC AGTCTTATGTGCTACTGATATGTCAGAACAAAGTCATCCAACAACATCAAGTGTAACTTCTGGTCAAGAAAACAATACCT GTGTGTATGATCCTCGGGAAATTCGAAGATCATCTGTTGGGCGGCCTTCGCGTAGATCAGCTGTGAAGGTTGTGTCCTAT AAGGAAATTCCTGTTAACGTGAAGATGCGCAGACCTAATTAGGTTGACTTTAAATCCGGTACTCACTGAATTATCAATAA TACTTCAGAAAAGAATGGAGTGGAAGCTTGAAAACATGATATGTCCTACATCCTGATGCTATGGTGCATGCCCTGATATA GGGACTGCATAGTTGAAATTTGATGCACGTTCTACTGTAATAGCCTTTAGATGAGATAGTATTGATCCACTGAAGTGGTG CCCTGCTTCCTCTTCCTCACATTGTAAATTCGAGTAACGGTGGTAGCTAGTTGGTTGTTCTCTGTTTTTTCAAATTGAAA AGGAGTTACAACCAACAAAAGCAAGTATGTGGTTATTTTGGAAACTTCATTTTGCTTGAACTTGATTATTCTAAAATTGA CTTTTTTTTATCTAAAAAGTGATTTTAGTGAAAGATATTATGGAAGTATTGAATCTGGTGATCTGCTTTTATAAAAAAAT ATTGATTAAAAATGTAATGTTCA
CDS sequence (LotjaGi5g1v0255100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGTTCGGAAAGCCGTTTGGTGCTACTATTATTAATCTTCAAGATCCCATTTTTGAGTTTCCCTCCCTTCAAACTCA CAGCGACAGAGACGACGAAATGGACGGTGGCGCCGGCATCTTCCTCGACTCCGATACGGCGCGCGTCGGCGCTGTTGGAG TTGCAGGTCAAAAAGCAAAGAGAGGGAAAATGGTGAAGGGGGATTCTGTTTCTGTGGGAACTGCTCAGAAGAAAAAGCTG GCTGACATTACCAACCGGGACCAACAACAGCGACCCATTACTCAACAAGCAAACCAACAAGCTGCAACAATTGCTGCACC TGGCATCACTTCTGACCAGCTTCTCAATGAAAATGCAATGTTGATGAAGGTCCTAGCTAACAGAAATGCGGTAATAGAAT CATGTAAGGCAGAGCTACAGAAGTCTCAAACCAATTATCTGAGACTGCGGAAGGAAAATTCAGAACTTGCGCTGACAAAC ACTCATATAATGGCGGAGCTTAATTCAAGTAAACAGAGGCTAAGGGAACTTCAGCATGAACTAGGAATGAAGAATGGTAT GCTCAGAGCTATGAAATTAGAATTGACGGCAAAAGAGCACACAGAAAAATCGAATCGGGAAATTGAAGCAAACGAGGTCA AAGCATCTCACAGTAAGGAGTTAGATCAAACACTTCAAGAAGATGCCAGGGAGAAAACAAAAAGGAAGAGGGTGTCCAGA TCTCAATCATCTGCACCTGCTGTCATTAAACAAGTAAAATCCATAGAAAAGGTTGAAAACAAGAGGTATTCTTTGAGAAG GCAATCGGCAGGGTTGCAAGCTGAAAAATCACAACCAACAGAAGACTCTGAGGTAGCTCAAGTCAAATATGATGTCGCGC ATTTACAAGAAAATTTGGAAAACGAAAATGGACCAACATCATCTGAAGTTCATGAAGAAGCCAAAGAAGATGCCGAATCT TCAGGACCAGCTAACACCGAACAAGTTCATGCCAAAAAGAATATTGAAAATAAGAGGCAAAGTTTGAGAAGGCAATCTTC CATGTTCAAGCCTGAGAATCTAGAACCAACTGAAGACTTCTTTGAGGTAGATGATGCGAAATTTCCAGTCTTATGTGCTA CTGATATGTCAGAACAAAGTCATCCAACAACATCAAGTGTAACTTCTGGTCAAGAAAACAATACCTGTGTGTATGATCCT CGGGAAATTCGAAGATCATCTGTTGGGCGGCCTTCGCGTAGATCAGCTGTGAAGGTTGTGTCCTATAAGGAAATTCCTGT TAACGTGAAGATGCGCAGACCTAATTAG
Protein sequence (LotjaGi5g1v0255100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRFGKPFGATIINLQDPIFEFPSLQTHSDRDDEMDGGAGIFLDSDTARVGAVGVAGQKAKRGKMVKGDSVSVGTAQKKKL ADITNRDQQQRPITQQANQQAATIAAPGITSDQLLNENAMLMKVLANRNAVIESCKAELQKSQTNYLRLRKENSELALTN THIMAELNSSKQRLRELQHELGMKNGMLRAMKLELTAKEHTEKSNREIEANEVKASHSKELDQTLQEDAREKTKRKRVSR SQSSAPAVIKQVKSIEKVENKRYSLRRQSAGLQAEKSQPTEDSEVAQVKYDVAHLQENLENENGPTSSEVHEEAKEDAES SGPANTEQVHAKKNIENKRQSLRRQSSMFKPENLEPTEDFFEVDDAKFPVLCATDMSEQSHPTTSSVTSGQENNTCVYDP REIRRSSVGRPSRRSAVKVVSYKEIPVNVKMRRPN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 49 | 434 | 386 | 5.1E-93 | – | |
| PANTHER | 49 | 434 | 386 | 5.1E-93 | – | |
| Coils | 132 | 152 | 21 | - | – | |
| Coils | 160 | 180 | 21 | - | – | |
| MobiDBLite | 198 | 235 | 38 | - | – | |
| MobiDBLite | 198 | 251 | 54 | - | – | |
| Coils | 255 | 275 | 21 | - | – | |
| MobiDBLite | 297 | 357 | 61 | - | – | |
| MobiDBLite | 306 | 320 | 15 | - | – | |
| MobiDBLite | 331 | 345 | 15 | - | – | |
| MobiDBLite | 376 | 414 | 39 | - | – | |
| MobiDBLite | 376 | 396 | 21 | - | – | |
| Pfam | 409 | 434 | 26 | 2.7E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Chromosome, centromeric region | The region of a chromosome that includes the centromeric DNA and associated proteins. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Meiotic chromosome segregation | The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets during M phase of the meiotic cell cycle. |
Expression pattern of LotjaGi5g1v0255100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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