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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0255200 |
| Transcript ID | LotjaGi5g1v0255200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone protein ClpB; TAIR: AT3G52490.1 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9SVD0|SMXL3_ARATH Protein SMAX1-LIKE 3; TrEMBL-Plants: tr|V7BFA4|V7BFA4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0255200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56411248..56414742) extracted from Lotus japonicus Gifu genome v1.2.
AAAACCCACACAATATATATGGTACTATAAATTAACCACCATAGATATCTGTATCTTCCTAAGCTAGTACTACTACTCTT TGTTTTTTTCTACTATCTTTCAAACCAAGTGAACCTTAGTCATCCAAAACTCCATCATTAAGTCTTGCTCAACCTTTGTA GTTTGTACCATATCTCTTTGACTTGTGACTGTTTGAGGAAATAGCTATCTGAGAAGATGAGGGGAGGAATTTGCAGTATA CAGCTTCAGGCTCTCACACCAGAAGCTGCAACTGTTGTTAAACAAGCTCTTAACCTTGCCATGAGAAGGGGTCATGCACA AGTGACTCCTCTTCATGTTGCAAGTGCCATGCTTGCAACTTCCACAGGCCTTCTCCGGAAGGCTTGTCTCCAGTGCCACT CTCACCCTCTTCAATGCAAGGCTCTTGAGCTTTGCTTCAATGTTGCCTTAAACCGTTTGCCAGCTTCATCTCCAAGCCCT CTCTTGGGGCCTCAATATTCAACTCCTTCACTCTCCAATGCTTTGGTTGCAGCTTTCAAACGTGCTCAGGCTCACCAAAG GCGCGGATCCATTGAGAATCAGCAGCAACAACATGTTCTGGCTTTGAAGATTGAGGTGGAGCAGCTCATAATCTCAATCC TTGATGATCCAAGTGTTAGTAGAGTGATGAGAGAAGCTGGTTTTTCCAGCACCCTTATTAAAAGTTGGGTTGAAGAACAA GCTCTTCCAGTGGAAGTTTGTTCTCAAAAAGCTCCTATCAAAGAAAACACCAAGCCTCAAGTTCTTGGCAGTGGTGATAT CTCATTCTCTCCATCTAGACCTTTTGGTCAAGTTGGGGGTTCATTTATTAATAATGATGATGTGACAAGTGTGTTGAGTG AGTTGGTGAAGAGGAAAAGAAACATGGTTATTGTGGGGGAGAGTTTGGATAATGTTGAGGGAGTAGTTAAGGGAGTGATG GAGAGGTTTGAGGCAGGGAATGTTCCTGGAGACTTGAGGTATGTGCAATTTGTGAGTCTTCCTCTTATGTGTTTCAGGAA CATTAGCAAGGAGGAAGTTGAAAAGAAGCTTTATGAGGTTAGAAGCCTTGTTAAGAGCTATGTGGTAAGAGGGGTTATTC TTTATTTGGGTGATCTGAAATGGTTGTTTGAGTTCTGGTCATTTTTTTGTGAGCAAAAGACAAACTACTACTGTTCTGTG GAGCATATGGTGATGGAGGTTAAAAAATTGGTCAGTGGGAGTGGGGAGAGTAGTAGAGTTTGGCTTATGGGGATTGCAAA TTTGAAAACATACATGAAGTGTATAAATTGTCACCCTTCCCTTGAAACTATTTGGGAGCTTCATCCCTTCACTATTCCTG TTGGAAGCCTGAGCCTAAGTTTGAATTTTGACAGGTAATTCATTATTATTTATTCTTTACATATTTTGGCTGCTTTTTCC TCTCTTTCCTTGTCTTATTGAATTCTGTCTTGTAACCTCCTTGTTATTTCATTTTGTTTTAGTGGTTTTCAAGCTCAGGA GAGATGCAAAGTAATTTTCAAGGACATGCCTTTTGAAGATAGAGTAGGAGCAAGGAAGAATCTAACTTGCTGCAGGGATT GCTCCATAAATTTTGAAAAAGAAGCTCAGAGCATCACTAACAGTGGAAGCAAGAAAATGTGCAGTGCTAGCTTGCCAACA TGGCTCCAAAATTGCAAGGAAGAGAGAACTCACATAATGGAAGATCAGGTATGCATCATAGTAGTCACACTAATAACATG TTTGGATCAATTCTGACACCAATCACAGAAACTTCTTCCCAGAATTAATTTTGCTTTAGAATCAATTATAGAACAATTGT GGCAATATTTTCTTTTGAAACATTTCTGATATTTTTCCTTTTTGAAACAGGAAAATGCAGCAAGGCTTAAGGATCTGTGC AAGAAATGGAACTCAATATGCAATTCAGTACACAAACAACACCCTTCCATTCTTGAGAAACCATTTTTGTTTATCTCATC TTGTCCTTCATCTCCCACTTCTGTTTCCTCACCTGAAGGAAAGCCTAACTTGCATCAGAACCACCTAAACTGGCCAATCA TTTCTGAACCAGAAAAAACACTTAAAGAATGCGAGTTATACACTGAAGAAGCTGGTGATGATTGTTATGAAAGTAACTTC ATAATGTTCATGCCAGACAGAAATGTCCCTAAACCAGATCTTTTGTCAAACCCCAATTCTAGTCCCAACTCAGCTTCTTC AAGTGAAGCAGTGGAAGGTTTAGACAGCACTGAAATGTTCAAGGAATTCAATGCTGAGAATCACAAGATTCTCTGTGATG CCTTGGAGAAGAAGGTTCCTCAGCACAAGGAAATTATTGCAGAGATTGCAAGCACTGTCCTTCATTGTAGATCAGGAATG AATAAAAGAGCGAAGCAAGAAACTTGGATGGTCTTTCAGGGTGTGGATTCTCAGGCCAAAGAGAATATCTCAAGGGAGCT AGCAAAAGTTGTTTTTGGCTCTTGTAACAACTTTGTGACTATTGCTTTGAGCAGTTTCTGTTTCCAAGGAGATGATGATT CCAGTGATGAGAAATCCAAAAGGAAAAGGCCAAGAGATGAGTTGGGAAGCACTTACCTGCAGAGATTTGGGGAAGCAGCA AATGAGAACCCCCACAGGGTGTTCTTCATGGAAGATTTGGATCAAGTTGATTACTTTTCTCAAAAGGGTATCAAGAAAGC AATTGAGAGTGGAAGTATTACACTTCCTTGTGGTGAATCTGTTCCTCTCAAAGATGCCATTGTCATTTTCAGCTGTGAAA GGTTCAGTTCAGTGTCAAGATCATCTCCTGCAAGAAAATCATCATCACCATCTGGTGAAAGCAAAGGGAAAGAGACCATG GATGATGAATGTCCCAGCCTCTGTTTGGATTTGAATATAGCCATTGAAGATGGTAGTAGAGGTGCTGCTTTAGGTGGAGA TAATGGTATCCTAGAGTTAGTTGATAAGCAAATTAGTTTTAACTTTTAACATACAAGAATTGTGATAGGAAGGGAAAAAG ACAAATCTTCTATGTTAAATTTGGGGTGTTACTTTTTTTCTTCTCTTTATGTTTTTCACTTCTTGTATTGTTTCTCAGTT TCATTTTGTGGGGGGAAAGAAAGACATGAATGAAAAGAAAGGTTTAGATAGAGATAGTTCTTGATGTGCAATTTCAAACT TGGGAGGGAATGGTATAGGATGATAACTTTGTATATATGTTAATTAATGTGCTTTAATGTAATTTGGTTCCTCTTTATCT TCAGTTACTGGCTTTGAATTCAAGAAAGAAGGTTTCTTAATCTTCCATTGTGATCCTTTCATTGGCTCCAGATATAATAA CATTCAATCTTCTCAGAAAGAGTACAGCAAAAAATGGTGGCTGAATATATACCAGTTATTTCTCTCATGTGTTAATGTGA TAGTTTTGCAGAGGAAAATTTTTGGTCTGCACCTAAATTAAAATGGGAAGATAAG
CDS sequence (LotjaGi5g1v0255200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGGGAGGAATTTGCAGTATACAGCTTCAGGCTCTCACACCAGAAGCTGCAACTGTTGTTAAACAAGCTCTTAACCT TGCCATGAGAAGGGGTCATGCACAAGTGACTCCTCTTCATGTTGCAAGTGCCATGCTTGCAACTTCCACAGGCCTTCTCC GGAAGGCTTGTCTCCAGTGCCACTCTCACCCTCTTCAATGCAAGGCTCTTGAGCTTTGCTTCAATGTTGCCTTAAACCGT TTGCCAGCTTCATCTCCAAGCCCTCTCTTGGGGCCTCAATATTCAACTCCTTCACTCTCCAATGCTTTGGTTGCAGCTTT CAAACGTGCTCAGGCTCACCAAAGGCGCGGATCCATTGAGAATCAGCAGCAACAACATGTTCTGGCTTTGAAGATTGAGG TGGAGCAGCTCATAATCTCAATCCTTGATGATCCAAGTGTTAGTAGAGTGATGAGAGAAGCTGGTTTTTCCAGCACCCTT ATTAAAAGTTGGGTTGAAGAACAAGCTCTTCCAGTGGAAGTTTGTTCTCAAAAAGCTCCTATCAAAGAAAACACCAAGCC TCAAGTTCTTGGCAGTGGTGATATCTCATTCTCTCCATCTAGACCTTTTGGTCAAGTTGGGGGTTCATTTATTAATAATG ATGATGTGACAAGTGTGTTGAGTGAGTTGGTGAAGAGGAAAAGAAACATGGTTATTGTGGGGGAGAGTTTGGATAATGTT GAGGGAGTAGTTAAGGGAGTGATGGAGAGGTTTGAGGCAGGGAATGTTCCTGGAGACTTGAGGTATGTGCAATTTGTGAG TCTTCCTCTTATGTGTTTCAGGAACATTAGCAAGGAGGAAGTTGAAAAGAAGCTTTATGAGGTTAGAAGCCTTGTTAAGA GCTATGTGGTAAGAGGGGTTATTCTTTATTTGGGTGATCTGAAATGGTTGTTTGAGTTCTGGTCATTTTTTTGTGAGCAA AAGACAAACTACTACTGTTCTGTGGAGCATATGGTGATGGAGGTTAAAAAATTGGTCAGTGGGAGTGGGGAGAGTAGTAG AGTTTGGCTTATGGGGATTGCAAATTTGAAAACATACATGAAGTGTATAAATTGTCACCCTTCCCTTGAAACTATTTGGG AGCTTCATCCCTTCACTATTCCTGTTGGAAGCCTGAGCCTAAGTTTGAATTTTGACAGTGGTTTTCAAGCTCAGGAGAGA TGCAAAGTAATTTTCAAGGACATGCCTTTTGAAGATAGAGTAGGAGCAAGGAAGAATCTAACTTGCTGCAGGGATTGCTC CATAAATTTTGAAAAAGAAGCTCAGAGCATCACTAACAGTGGAAGCAAGAAAATGTGCAGTGCTAGCTTGCCAACATGGC TCCAAAATTGCAAGGAAGAGAGAACTCACATAATGGAAGATCAGGAAAATGCAGCAAGGCTTAAGGATCTGTGCAAGAAA TGGAACTCAATATGCAATTCAGTACACAAACAACACCCTTCCATTCTTGAGAAACCATTTTTGTTTATCTCATCTTGTCC TTCATCTCCCACTTCTGTTTCCTCACCTGAAGGAAAGCCTAACTTGCATCAGAACCACCTAAACTGGCCAATCATTTCTG AACCAGAAAAAACACTTAAAGAATGCGAGTTATACACTGAAGAAGCTGGTGATGATTGTTATGAAAGTAACTTCATAATG TTCATGCCAGACAGAAATGTCCCTAAACCAGATCTTTTGTCAAACCCCAATTCTAGTCCCAACTCAGCTTCTTCAAGTGA AGCAGTGGAAGGTTTAGACAGCACTGAAATGTTCAAGGAATTCAATGCTGAGAATCACAAGATTCTCTGTGATGCCTTGG AGAAGAAGGTTCCTCAGCACAAGGAAATTATTGCAGAGATTGCAAGCACTGTCCTTCATTGTAGATCAGGAATGAATAAA AGAGCGAAGCAAGAAACTTGGATGGTCTTTCAGGGTGTGGATTCTCAGGCCAAAGAGAATATCTCAAGGGAGCTAGCAAA AGTTGTTTTTGGCTCTTGTAACAACTTTGTGACTATTGCTTTGAGCAGTTTCTGTTTCCAAGGAGATGATGATTCCAGTG ATGAGAAATCCAAAAGGAAAAGGCCAAGAGATGAGTTGGGAAGCACTTACCTGCAGAGATTTGGGGAAGCAGCAAATGAG AACCCCCACAGGGTGTTCTTCATGGAAGATTTGGATCAAGTTGATTACTTTTCTCAAAAGGGTATCAAGAAAGCAATTGA GAGTGGAAGTATTACACTTCCTTGTGGTGAATCTGTTCCTCTCAAAGATGCCATTGTCATTTTCAGCTGTGAAAGGTTCA GTTCAGTGTCAAGATCATCTCCTGCAAGAAAATCATCATCACCATCTGGTGAAAGCAAAGGGAAAGAGACCATGGATGAT GAATGTCCCAGCCTCTGTTTGGATTTGAATATAGCCATTGAAGATGGTAGTAGAGGTGCTGCTTTAGGTGGAGATAATGG TATCCTAGAGTTAGTTGATAAGCAAATTAGTTTTAACTTTTAA
Protein sequence (LotjaGi5g1v0255200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRGGICSIQLQALTPEAATVVKQALNLAMRRGHAQVTPLHVASAMLATSTGLLRKACLQCHSHPLQCKALELCFNVALNR LPASSPSPLLGPQYSTPSLSNALVAAFKRAQAHQRRGSIENQQQQHVLALKIEVEQLIISILDDPSVSRVMREAGFSSTL IKSWVEEQALPVEVCSQKAPIKENTKPQVLGSGDISFSPSRPFGQVGGSFINNDDVTSVLSELVKRKRNMVIVGESLDNV EGVVKGVMERFEAGNVPGDLRYVQFVSLPLMCFRNISKEEVEKKLYEVRSLVKSYVVRGVILYLGDLKWLFEFWSFFCEQ KTNYYCSVEHMVMEVKKLVSGSGESSRVWLMGIANLKTYMKCINCHPSLETIWELHPFTIPVGSLSLSLNFDSGFQAQER CKVIFKDMPFEDRVGARKNLTCCRDCSINFEKEAQSITNSGSKKMCSASLPTWLQNCKEERTHIMEDQENAARLKDLCKK WNSICNSVHKQHPSILEKPFLFISSCPSSPTSVSSPEGKPNLHQNHLNWPIISEPEKTLKECELYTEEAGDDCYESNFIM FMPDRNVPKPDLLSNPNSSPNSASSSEAVEGLDSTEMFKEFNAENHKILCDALEKKVPQHKEIIAEIASTVLHCRSGMNK RAKQETWMVFQGVDSQAKENISRELAKVVFGSCNNFVTIALSSFCFQGDDDSSDEKSKRKRPRDELGSTYLQRFGEAANE NPHRVFFMEDLDQVDYFSQKGIKKAIESGSITLPCGESVPLKDAIVIFSCERFSSVSRSSPARKSSSPSGESKGKETMDD ECPSLCLDLNIAIEDGSRGAALGGDNGILELVDKQISFNF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 839 | 839 | 0.0 | – | |
| PANTHER | 1 | 839 | 839 | 0.0 | – | |
| Gene3D | 9 | 169 | 161 | 7.6E-50 | ||
| ProSiteProfiles | 10 | 172 | 163 | 33.178 | – | |
| SUPERFAMILY | 13 | 166 | 154 | 7.65E-12 | ||
| Pfam | 24 | 55 | 32 | 0.001 | ||
| MobiDBLite | 569 | 589 | 21 | - | – | |
| MobiDBLite | 571 | 589 | 19 | - | – | |
| Gene3D | 583 | 804 | 222 | 5.6E-22 | – | |
| MobiDBLite | 778 | 800 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein metabolic process | The chemical reactions and pathways involving a protein. Includes protein modification. |
Expression pattern of LotjaGi5g1v0255200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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