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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0255600 |
| Transcript ID | LotjaGi5g1v0255600.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Charged multivesicular body protein 5; TAIR: AT3G10640.1 SNF7 family protein; Swiss-Prot: sp|Q54JK4|CHMP5_DICDI Charged multivesicular body protein 5; TrEMBL-Plants: tr|I3SD74|I3SD74_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0255600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56460478..56465001) extracted from Lotus japonicus Gifu genome v1.2.
TATAAATAGAAGAAGAAAAAAACTATTAAAATTGTTATAATAAGATAGGGTAATCCCAAAGCTAGTCAAGAAATAGGAAT AGATTGTGGAAGTTTCCGTTGTACACACAAGAAAGACACCATCCCATTCCACCTCGTTAAGCAAAACCTCAGAAATCAAA TCAAAGTGTTTACGTTGTCTCGTTCGCTCATTCCCTCTCGCTTTCTCAATTCTCTCTGTGATTCCCTCACAAAACCAGTA ACCTCCACATTCAATTTCCGTTTCCATTCCATCACGATTCACGAACAAGAACAACGATGAAGAGAGTCTTCGGTGTCAAG AAGAACAAGGAACCCCCTCCTTCCGTCGCCGATGCCTCCGATAGGGTTCGCTTCCTCTCTCAATTTTCATACTCTCCCAG ATCTCATCAATTTTCGCATTGTCTTTTTAACCTAACTGCATAAACCCTAAATTTGTGTTCGAATTTCATGCGTGTAGATT AGATTTTGCATAATTGGGTGTAATGTTATAGATCGATGCATGATTTTCTATAGTTGCATAACAATTTGTGGTAGTTGGTA GTTTCAATTAATTATCTATTTGGTGATCAAGTGTAATTGTTATGGATGTTCTAGATTACGAAACGAGGTGATTCGGTGGA GGAGAAGATTAAGAAGCTTGATGCTGAACTTACTAGATACAAAGAACAGATCAAGAAAACTAGACCTGGTCCTGCCCAGG AAGCTGTTAAAGCTAGAGCCATGAGAGTTCTTAAGCAAAAACGAATGTAAGTTGCTTTATTCATCATATCAATTAACCTA AAGTTATAGACAAGCAATTGGCAACTAAGTAAGAATAGGAGTACTTGCCATTTTTACTTTTAATATGTAGGAAGTTGGAA TTGAAAAAGGGGAAATCATTTATAGCTGTATTCATATAGCAATAAGCCAATGTTGTTAATTGCGGATCGCGGGAAATAGC GGAAAGCAAAAAATCTGCTATTTCCCGCCCTCATAGCGGACAATATTATATAGCTGTATTCATATGGCAATATACTATGC ATTTTGTCAGGTATGAAGGCCAACGTGATATGCTGTATAATCAGACATTCAATCTTGATCAAGTTCAATTTGCTGCTGAG GGGATTAAAGATGCTCAACAAACTGTATGTATCCATGAACTTGATCCTTGTATTGAAACTCCTTTTTCCTTATCCATCTG TATAACATCTTTGATCTGTTCAAGCATATGCGGCTCGTTTAATTCATAACAAAAGACATTTTTATGAAAAAAATCCTGCA GATGAAATAAAATAATTTATGGCATGGCTTCATCACTCCCTCTCTAAAAGCAAATGATAATTGGTTGCATCATTGCAGTA GTGCCTAATGTTATTAGCAGTGAGGCTTATTAGCGGTGTTGTTATTGAAAGGGGAAACTTATTTGAATTTGTAGTTCTTG TTATATTATTTTATGAGTTTTCCTGAGGGGTTAGCCTTAGTAACAAGGTGCTGCCTTGTAACCTAGTGGTCACAGATTAG GAAAACGGCCTACCCACTTGCAGGGTGTGGCTGTGTTTGTTTGAGATATTACCTTTTCTAGACACCTTAACCGTCGGAGT CTTGTGCAATAGTGGGTTACCCTTTCATTTGAGTTTATCTTGTTTTTTAAAATACAAATTATCTGGATGTCTGTATATTT ATAATTTTTACAAATTTGACAATGCCAATTGTATGCTATATCAAGTGTAGTTGACAGAGGAAACTATATTCACTGTAAAA ATTCGTTTGTCTTGGTAGCGCTTTAAGGGGCATGGTTCGACGCGGAGCTTTGTCTGTATCCTGTTTGGGACCTGCTGCCT ACCTCAGGAGAGGTAGGGGATGAATCGTTTGTCACTTGGGAGGGGTGTCTTCATAAATGTTTTTTTTAATCATGAGTTAT ATTTATGTTATAACATATCCTAATATGTGTCTGAATTTTCAGAAATCCGATGTCCTCGAAGAATATTTTGCCAATTAGAT GTAACATTTGAATTGACATTGTTTAAAACTTTCTCTTTCTTTCCCTCCCCCTTTTCAGATGACAGCTTTGAAGTCTGCCA ATAAGGAATTGAAGGGAATGATGAAAACTGTGAAGATCCAAGACATTGATGTATGCACTCTCTTTTCTTTTCTTTTAGCT TCTATTTATCCAACAATGAGAATTTGAGGTCTTAATTGTTGATCCATTTTGTAGAACTTGCAAGATGAGATGATGGACCT GATGGATGTAAGTAATGAAATCCAAGAGACTTTGGGTAGAAGCTACAATGTGCCTGATGACATTGACGAGGATGAACTTA TGGGTGGTAAGTTAGGAATTTGTTTAGGCTTTTGAGATTTAAGCTGACCACACACCTTTTCAATAACTCCAAGCTAATAC AGCTACACTGTCTGGTATGGCCATATCTGTAGGGTTGTGGGGTTTTGTTGCTGTTTGATGAAAAATTATTTCTATTTTAT GGGTTTAGCTTCCTAGTTTGAATGAAAAGATGTGAAATATCCAATGGAGTATGCTTTTTGCTTGTGAAACGTGTCATCCG CAGCATTGTGTGGGTTGGATGCATCGTGCCACGAATTACTCTCTTAGGAAACATGCATCCATCAAGTTTAAGGGAGAGAA ATTTCCATTTTTTGTCATGAAGTTTCTTAATATCTGTTTCTTTCTGTTCTTGGCAAAACAGAGCTTGATGCCTTGGAATT AGACATGGGGAATGAGACTGAAGCTGATGGAGTCCCCTCGTACCTCCAACCTGATAAAGAACCTGATTTGGACGCAGAGC TTAACTTACCTTCAGCTCCAACAGGACAAACAGCAGATCCACATGGCAGATTTAATGCTCAGGTATAGTTTCCCCCCCAT TTTATTTTATCAAGAAGAGAATTATTTTGTCCTATCAGAGTTTAGTTGTTAAAGCTATACCTAAAATTTGGCACTAAAGG GTGAAAAGGCAACATGGTTATTGATTCAATGTATAAAATGTTGGAAAAGCTATAGGAAAAACAATTGTCTAGACATCAAG ATGTTTTGCTTTTATAGATAATCTAGTTAGGTGGATCATTGGGGTTTCGGATTTCTAAAGCAGGTGAGAAAAAGATGATA GCTAAGGCTGTCTAATTTCCGGGTTCTATTGCCCAATATAATTGAATATGGGTTTTCCGTCAATTTGTAGTTTGAAAAAC AATTGCAGGAGTCATAAATTTGAAAATTAGCATGCAAAAGCTACTAGAAATTGAAGCGGCTCTAAGTGAAACTGGCTATA GTTGAATAAAATCAGTGAGAAAGTTGAAAGTAGCAGACTTTTTCAATGCATCATCATAACACAACCATCAATGAAGAAGA AGCCTATACTTGGTTCCATTTTTTGTGACTACGATTGCATGGTTAACCTATGGATGCTTGAGGTTTCCATGTTTGATGAT GTTAATTGAGTGGTGCTGTGTTTCATACACTTGAATTATGTTTGTGATTATTGAAAGGATTCATCATCAACCTTTGCACA GTTACGCAGCCTCTGATGGCTAGTCTACTACTTATTACAATGACTAGTGATTCTTGATGTTCTTTAACACAAGTGGTTCT AGATTTTTTGCTTTAATGTTCTGTAACTTGAGTTTCTGATTGATTACTTTGATACTGACAGACTGAGGATGAGTTGGGTT TACCTGCTGTCCCTCGGGCGTCCCTGCGCGGTTAGATCTTGATGTCACTGGCATAGCTGGTGCAGACACGAGCAAGGCCC TGTAAAGATGTGCAGAACTTGAAAACATTGATTAATACAGTGATTAAATTGGTCTGGTGTTGGCATTATTTGACCAAGTA CATTTTTCCTCCTTGTCCCATATTTGATATTTGTATGAAAACGCTATGTCACGGGAAAAAAAGGAAAAGTATTACTGTTT GGCAAAAAGCTTTGGTAAGTTGTGTTTAGAGGAATACTCCTTCATTATTCCAATTTCACTTTCTTGGTGAAAATAGTTCT CAGATTTCTTAGTTTGTTTATAACCGTGAACGTGGTAAATCATCATGAAATTGTGACAGTTTTGAATCGGAGTTTGGATT GAAAGCATAATGAGTTTTGAACGAATTAGTGTTTGTTTGAATTAGCGCTGTTAGAATTGGTTTTAGATAGAACTAATTAT GGTCAAATTATGATAAACTTGTTGTCAGAATTAAGTTTTATTATAAGCAAGTTTCATCTATTTAATAGTGATGAAAAGAG GGATAGATACAAAATTTAACATAACAATTTCGACACATGATAGAATATTTGGAATAACACCTCTTATTTGTAGTATCAAT TTTTGGAAAGAAGTTTTTCTCTATTAATTTCAAATTTAGAGAAGAATTTGATCCAATCTTGCTGACGTACTACTCTTCCA ATATCTCAATTATAAATAATTCATACAATAATTGATATATAGCTTAGAAATGTTAACATAATTTTCAATGTTATATATCT ATTAATTGATATATATCTCAAACATTATTTTCAATGTATTTTTT
CDS sequence (LotjaGi5g1v0255600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAGAGTCTTCGGTGTCAAGAAGAACAAGGAACCCCCTCCTTCCGTCGCCGATGCCTCCGATAGGATTACGAAACG AGGTGATTCGGTGGAGGAGAAGATTAAGAAGCTTGATGCTGAACTTACTAGATACAAAGAACAGATCAAGAAAACTAGAC CTGGTCCTGCCCAGGAAGCTGTTAAAGCTAGAGCCATGAGAGTTCTTAAGCAAAAACGAATGTATGAAGGCCAACGTGAT ATGCTGTATAATCAGACATTCAATCTTGATCAAGTTCAATTTGCTGCTGAGGGGATTAAAGATGCTCAACAAACTATGAC AGCTTTGAAGTCTGCCAATAAGGAATTGAAGGGAATGATGAAAACTGTGAAGATCCAAGACATTGATAACTTGCAAGATG AGATGATGGACCTGATGGATGTAAGTAATGAAATCCAAGAGACTTTGGGTAGAAGCTACAATGTGCCTGATGACATTGAC GAGGATGAACTTATGGGTGAGCTTGATGCCTTGGAATTAGACATGGGGAATGAGACTGAAGCTGATGGAGTCCCCTCGTA CCTCCAACCTGATAAAGAACCTGATTTGGACGCAGAGCTTAACTTACCTTCAGCTCCAACAGGACAAACAGCAGATCCAC ATGGCAGATTTAATGCTCAGACTGAGGATGAGTTGGGTTTACCTGCTGTCCCTCGGGCGTCCCTGCGCGGTTAG
Protein sequence (LotjaGi5g1v0255600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRVFGVKKNKEPPPSVADASDRITKRGDSVEEKIKKLDAELTRYKEQIKKTRPGPAQEAVKARAMRVLKQKRMYEGQRD MLYNQTFNLDQVQFAAEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSNEIQETLGRSYNVPDDID EDELMGELDALELDMGNETEADGVPSYLQPDKEPDLDAELNLPSAPTGQTADPHGRFNAQTEDELGLPAVPRASLRG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 28 | 28 | - | – | |
| PANTHER | 1 | 233 | 233 | 7.2E-131 | – | |
| PANTHER | 1 | 233 | 233 | 7.2E-131 | – | |
| Pfam | 12 | 209 | 198 | 1.5E-55 | ||
| Coils | 28 | 48 | 21 | - | – | |
| Coils | 99 | 119 | 21 | - | – | |
| Coils | 128 | 148 | 21 | - | – | |
| MobiDBLite | 178 | 237 | 60 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Vacuolar transport | The directed movement of substances into, out of or within a vacuole. |
Expression pattern of LotjaGi5g1v0255600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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