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LotjaGi5g1v0255600.1

Overview

Field Value
Gene ID LotjaGi5g1v0255600
Transcript ID LotjaGi5g1v0255600.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Charged multivesicular body protein 5; TAIR: AT3G10640.1 SNF7 family protein; Swiss-Prot: sp|Q54JK4|CHMP5_DICDI Charged multivesicular body protein 5; TrEMBL-Plants: tr|I3SD74|I3SD74_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0255600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:56460478..56465001) extracted from Lotus japonicus Gifu genome v1.2.

TATAAATAGAAGAAGAAAAAAACTATTAAAATTGTTATAATAAGATAGGGTAATCCCAAAGCTAGTCAAGAAATAGGAAT AGATTGTGGAAGTTTCCGTTGTACACACAAGAAAGACACCATCCCATTCCACCTCGTTAAGCAAAACCTCAGAAATCAAA TCAAAGTGTTTACGTTGTCTCGTTCGCTCATTCCCTCTCGCTTTCTCAATTCTCTCTGTGATTCCCTCACAAAACCAGTA ACCTCCACATTCAATTTCCGTTTCCATTCCATCACGATTCACGAACAAGAACAACGATGAAGAGAGTCTTCGGTGTCAAG AAGAACAAGGAACCCCCTCCTTCCGTCGCCGATGCCTCCGATAGGGTTCGCTTCCTCTCTCAATTTTCATACTCTCCCAG ATCTCATCAATTTTCGCATTGTCTTTTTAACCTAACTGCATAAACCCTAAATTTGTGTTCGAATTTCATGCGTGTAGATT AGATTTTGCATAATTGGGTGTAATGTTATAGATCGATGCATGATTTTCTATAGTTGCATAACAATTTGTGGTAGTTGGTA GTTTCAATTAATTATCTATTTGGTGATCAAGTGTAATTGTTATGGATGTTCTAGATTACGAAACGAGGTGATTCGGTGGA GGAGAAGATTAAGAAGCTTGATGCTGAACTTACTAGATACAAAGAACAGATCAAGAAAACTAGACCTGGTCCTGCCCAGG AAGCTGTTAAAGCTAGAGCCATGAGAGTTCTTAAGCAAAAACGAATGTAAGTTGCTTTATTCATCATATCAATTAACCTA AAGTTATAGACAAGCAATTGGCAACTAAGTAAGAATAGGAGTACTTGCCATTTTTACTTTTAATATGTAGGAAGTTGGAA TTGAAAAAGGGGAAATCATTTATAGCTGTATTCATATAGCAATAAGCCAATGTTGTTAATTGCGGATCGCGGGAAATAGC GGAAAGCAAAAAATCTGCTATTTCCCGCCCTCATAGCGGACAATATTATATAGCTGTATTCATATGGCAATATACTATGC ATTTTGTCAGGTATGAAGGCCAACGTGATATGCTGTATAATCAGACATTCAATCTTGATCAAGTTCAATTTGCTGCTGAG GGGATTAAAGATGCTCAACAAACTGTATGTATCCATGAACTTGATCCTTGTATTGAAACTCCTTTTTCCTTATCCATCTG TATAACATCTTTGATCTGTTCAAGCATATGCGGCTCGTTTAATTCATAACAAAAGACATTTTTATGAAAAAAATCCTGCA GATGAAATAAAATAATTTATGGCATGGCTTCATCACTCCCTCTCTAAAAGCAAATGATAATTGGTTGCATCATTGCAGTA GTGCCTAATGTTATTAGCAGTGAGGCTTATTAGCGGTGTTGTTATTGAAAGGGGAAACTTATTTGAATTTGTAGTTCTTG TTATATTATTTTATGAGTTTTCCTGAGGGGTTAGCCTTAGTAACAAGGTGCTGCCTTGTAACCTAGTGGTCACAGATTAG GAAAACGGCCTACCCACTTGCAGGGTGTGGCTGTGTTTGTTTGAGATATTACCTTTTCTAGACACCTTAACCGTCGGAGT CTTGTGCAATAGTGGGTTACCCTTTCATTTGAGTTTATCTTGTTTTTTAAAATACAAATTATCTGGATGTCTGTATATTT ATAATTTTTACAAATTTGACAATGCCAATTGTATGCTATATCAAGTGTAGTTGACAGAGGAAACTATATTCACTGTAAAA ATTCGTTTGTCTTGGTAGCGCTTTAAGGGGCATGGTTCGACGCGGAGCTTTGTCTGTATCCTGTTTGGGACCTGCTGCCT ACCTCAGGAGAGGTAGGGGATGAATCGTTTGTCACTTGGGAGGGGTGTCTTCATAAATGTTTTTTTTAATCATGAGTTAT ATTTATGTTATAACATATCCTAATATGTGTCTGAATTTTCAGAAATCCGATGTCCTCGAAGAATATTTTGCCAATTAGAT GTAACATTTGAATTGACATTGTTTAAAACTTTCTCTTTCTTTCCCTCCCCCTTTTCAGATGACAGCTTTGAAGTCTGCCA ATAAGGAATTGAAGGGAATGATGAAAACTGTGAAGATCCAAGACATTGATGTATGCACTCTCTTTTCTTTTCTTTTAGCT TCTATTTATCCAACAATGAGAATTTGAGGTCTTAATTGTTGATCCATTTTGTAGAACTTGCAAGATGAGATGATGGACCT GATGGATGTAAGTAATGAAATCCAAGAGACTTTGGGTAGAAGCTACAATGTGCCTGATGACATTGACGAGGATGAACTTA TGGGTGGTAAGTTAGGAATTTGTTTAGGCTTTTGAGATTTAAGCTGACCACACACCTTTTCAATAACTCCAAGCTAATAC AGCTACACTGTCTGGTATGGCCATATCTGTAGGGTTGTGGGGTTTTGTTGCTGTTTGATGAAAAATTATTTCTATTTTAT GGGTTTAGCTTCCTAGTTTGAATGAAAAGATGTGAAATATCCAATGGAGTATGCTTTTTGCTTGTGAAACGTGTCATCCG CAGCATTGTGTGGGTTGGATGCATCGTGCCACGAATTACTCTCTTAGGAAACATGCATCCATCAAGTTTAAGGGAGAGAA ATTTCCATTTTTTGTCATGAAGTTTCTTAATATCTGTTTCTTTCTGTTCTTGGCAAAACAGAGCTTGATGCCTTGGAATT AGACATGGGGAATGAGACTGAAGCTGATGGAGTCCCCTCGTACCTCCAACCTGATAAAGAACCTGATTTGGACGCAGAGC TTAACTTACCTTCAGCTCCAACAGGACAAACAGCAGATCCACATGGCAGATTTAATGCTCAGGTATAGTTTCCCCCCCAT TTTATTTTATCAAGAAGAGAATTATTTTGTCCTATCAGAGTTTAGTTGTTAAAGCTATACCTAAAATTTGGCACTAAAGG GTGAAAAGGCAACATGGTTATTGATTCAATGTATAAAATGTTGGAAAAGCTATAGGAAAAACAATTGTCTAGACATCAAG ATGTTTTGCTTTTATAGATAATCTAGTTAGGTGGATCATTGGGGTTTCGGATTTCTAAAGCAGGTGAGAAAAAGATGATA GCTAAGGCTGTCTAATTTCCGGGTTCTATTGCCCAATATAATTGAATATGGGTTTTCCGTCAATTTGTAGTTTGAAAAAC AATTGCAGGAGTCATAAATTTGAAAATTAGCATGCAAAAGCTACTAGAAATTGAAGCGGCTCTAAGTGAAACTGGCTATA GTTGAATAAAATCAGTGAGAAAGTTGAAAGTAGCAGACTTTTTCAATGCATCATCATAACACAACCATCAATGAAGAAGA AGCCTATACTTGGTTCCATTTTTTGTGACTACGATTGCATGGTTAACCTATGGATGCTTGAGGTTTCCATGTTTGATGAT GTTAATTGAGTGGTGCTGTGTTTCATACACTTGAATTATGTTTGTGATTATTGAAAGGATTCATCATCAACCTTTGCACA GTTACGCAGCCTCTGATGGCTAGTCTACTACTTATTACAATGACTAGTGATTCTTGATGTTCTTTAACACAAGTGGTTCT AGATTTTTTGCTTTAATGTTCTGTAACTTGAGTTTCTGATTGATTACTTTGATACTGACAGACTGAGGATGAGTTGGGTT TACCTGCTGTCCCTCGGGCGTCCCTGCGCGGTTAGATCTTGATGTCACTGGCATAGCTGGTGCAGACACGAGCAAGGCCC TGTAAAGATGTGCAGAACTTGAAAACATTGATTAATACAGTGATTAAATTGGTCTGGTGTTGGCATTATTTGACCAAGTA CATTTTTCCTCCTTGTCCCATATTTGATATTTGTATGAAAACGCTATGTCACGGGAAAAAAAGGAAAAGTATTACTGTTT GGCAAAAAGCTTTGGTAAGTTGTGTTTAGAGGAATACTCCTTCATTATTCCAATTTCACTTTCTTGGTGAAAATAGTTCT CAGATTTCTTAGTTTGTTTATAACCGTGAACGTGGTAAATCATCATGAAATTGTGACAGTTTTGAATCGGAGTTTGGATT GAAAGCATAATGAGTTTTGAACGAATTAGTGTTTGTTTGAATTAGCGCTGTTAGAATTGGTTTTAGATAGAACTAATTAT GGTCAAATTATGATAAACTTGTTGTCAGAATTAAGTTTTATTATAAGCAAGTTTCATCTATTTAATAGTGATGAAAAGAG GGATAGATACAAAATTTAACATAACAATTTCGACACATGATAGAATATTTGGAATAACACCTCTTATTTGTAGTATCAAT TTTTGGAAAGAAGTTTTTCTCTATTAATTTCAAATTTAGAGAAGAATTTGATCCAATCTTGCTGACGTACTACTCTTCCA ATATCTCAATTATAAATAATTCATACAATAATTGATATATAGCTTAGAAATGTTAACATAATTTTCAATGTTATATATCT ATTAATTGATATATATCTCAAACATTATTTTCAATGTATTTTTT 

CDS sequence (LotjaGi5g1v0255600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGAGAGTCTTCGGTGTCAAGAAGAACAAGGAACCCCCTCCTTCCGTCGCCGATGCCTCCGATAGGATTACGAAACG AGGTGATTCGGTGGAGGAGAAGATTAAGAAGCTTGATGCTGAACTTACTAGATACAAAGAACAGATCAAGAAAACTAGAC CTGGTCCTGCCCAGGAAGCTGTTAAAGCTAGAGCCATGAGAGTTCTTAAGCAAAAACGAATGTATGAAGGCCAACGTGAT ATGCTGTATAATCAGACATTCAATCTTGATCAAGTTCAATTTGCTGCTGAGGGGATTAAAGATGCTCAACAAACTATGAC AGCTTTGAAGTCTGCCAATAAGGAATTGAAGGGAATGATGAAAACTGTGAAGATCCAAGACATTGATAACTTGCAAGATG AGATGATGGACCTGATGGATGTAAGTAATGAAATCCAAGAGACTTTGGGTAGAAGCTACAATGTGCCTGATGACATTGAC GAGGATGAACTTATGGGTGAGCTTGATGCCTTGGAATTAGACATGGGGAATGAGACTGAAGCTGATGGAGTCCCCTCGTA CCTCCAACCTGATAAAGAACCTGATTTGGACGCAGAGCTTAACTTACCTTCAGCTCCAACAGGACAAACAGCAGATCCAC ATGGCAGATTTAATGCTCAGACTGAGGATGAGTTGGGTTTACCTGCTGTCCCTCGGGCGTCCCTGCGCGGTTAG 

Protein sequence (LotjaGi5g1v0255600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKRVFGVKKNKEPPPSVADASDRITKRGDSVEEKIKKLDAELTRYKEQIKKTRPGPAQEAVKARAMRVLKQKRMYEGQRD MLYNQTFNLDQVQFAAEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSNEIQETLGRSYNVPDDID EDELMGELDALELDMGNETEADGVPSYLQPDKEPDLDAELNLPSAPTGQTADPHGRFNAQTEDELGLPAVPRASLRG 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 28 28 -
PANTHER 1 233 233 7.2E-131
PANTHER 1 233 233 7.2E-131
Pfam 12 209 198 1.5E-55
Coils 28 48 21 -
Coils 99 119 21 -
Coils 128 148 21 -
MobiDBLite 178 237 60 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Vacuolar transport The directed movement of substances into, out of or within a vacuole.

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0255600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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