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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0255600 |
Transcript ID | LotjaGi5g1v0255600.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Charged multivesicular body protein 5; TAIR: AT3G10640.1 SNF7 family protein; Swiss-Prot: sp|Q54JK4|CHMP5_DICDI Charged multivesicular body protein 5; TrEMBL-Plants: tr|I3SD74|I3SD74_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0255600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56460774..56463584) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGAGAGTCTTCGGTGTCAAGAAGAACAAGGAACCCCCTCCTTCCGTCGCCGATGCCTCCGATAGGGTTCGCTTCCT CTCTCAATTTTCATACTCTCCCAGATCTCATCAATTTTCGCATTGTCTTTTTAACCTAACTGCATAAACCCTAAATTTGT GTTCGAATTTCATGCGTGTAGATTAGATTTTGCATAATTGGGTGTAATGTTATAGATCGATGCATGATTTTCTATAGTTG CATAACAATTTGTGGTAGTTGGTAGTTTCAATTAATTATCTATTTGGTGATCAAGTGTAATTGTTATGGATGTTCTAGAT TACGAAACGAGGTGATTCGGTGGAGGAGAAGATTAAGAAGCTTGATGCTGAACTTACTAGATACAAAGAACAGATCAAGA AAACTAGACCTGGTCCTGCCCAGGAAGCTGTTAAAGCTAGAGCCATGAGAGTTCTTAAGCAAAAACGAATGTAAGTTGCT TTATTCATCATATCAATTAACCTAAAGTTATAGACAAGCAATTGGCAACTAAGTAAGAATAGGAGTACTTGCCATTTTTA CTTTTAATATGTAGGAAGTTGGAATTGAAAAAGGGGAAATCATTTATAGCTGTATTCATATAGCAATAAGCCAATGTTGT TAATTGCGGATCGCGGGAAATAGCGGAAAGCAAAAAATCTGCTATTTCCCGCCCTCATAGCGGACAATATTATATAGCTG TATTCATATGGCAATATACTATGCATTTTGTCAGGTATGAAGGCCAACGTGATATGCTGTATAATCAGACATTCAATCTT GATCAAGTTCAATTTGCTGCTGAGGGGATTAAAGATGCTCAACAAACTGTATGTATCCATGAACTTGATCCTTGTATTGA AACTCCTTTTTCCTTATCCATCTGTATAACATCTTTGATCTGTTCAAGCATATGCGGCTCGTTTAATTCATAACAAAAGA CATTTTTATGAAAAAAATCCTGCAGATGAAATAAAATAATTTATGGCATGGCTTCATCACTCCCTCTCTAAAAGCAAATG ATAATTGGTTGCATCATTGCAGTAGTGCCTAATGTTATTAGCAGTGAGGCTTATTAGCGGTGTTGTTATTGAAAGGGGAA ACTTATTTGAATTTGTAGTTCTTGTTATATTATTTTATGAGTTTTCCTGAGGGGTTAGCCTTAGTAACAAGGTGCTGCCT TGTAACCTAGTGGTCACAGATTAGGAAAACGGCCTACCCACTTGCAGGGTGTGGCTGTGTTTGTTTGAGATATTACCTTT TCTAGACACCTTAACCGTCGGAGTCTTGTGCAATAGTGGGTTACCCTTTCATTTGAGTTTATCTTGTTTTTTAAAATACA AATTATCTGGATGTCTGTATATTTATAATTTTTACAAATTTGACAATGCCAATTGTATGCTATATCAAGTGTAGTTGACA GAGGAAACTATATTCACTGTAAAAATTCGTTTGTCTTGGTAGCGCTTTAAGGGGCATGGTTCGACGCGGAGCTTTGTCTG TATCCTGTTTGGGACCTGCTGCCTACCTCAGGAGAGGTAGGGGATGAATCGTTTGTCACTTGGGAGGGGTGTCTTCATAA ATGTTTTTTTTAATCATGAGTTATATTTATGTTATAACATATCCTAATATGTGTCTGAATTTTCAGAAATCCGATGTCCT CGAAGAATATTTTGCCAATTAGATGTAACATTTGAATTGACATTGTTTAAAACTTTCTCTTTCTTTCCCTCCCCCTTTTC AGATGACAGCTTTGAAGTCTGCCAATAAGGAATTGAAGGGAATGATGAAAACTGTGAAGATCCAAGACATTGATGTATGC ACTCTCTTTTCTTTTCTTTTAGCTTCTATTTATCCAACAATGAGAATTTGAGGTCTTAATTGTTGATCCATTTTGTAGAA CTTGCAAGATGAGATGATGGACCTGATGGATGTAAGTAATGAAATCCAAGAGACTTTGGGTAGAAGCTACAATGTGCCTG ATGACATTGACGAGGATGAACTTATGGGTGGTAAGTTAGGAATTTGTTTAGGCTTTTGAGATTTAAGCTGACCACACACC TTTTCAATAACTCCAAGCTAATACAGCTACACTGTCTGGTATGGCCATATCTGTAGGGTTGTGGGGTTTTGTTGCTGTTT GATGAAAAATTATTTCTATTTTATGGGTTTAGCTTCCTAGTTTGAATGAAAAGATGTGAAATATCCAATGGAGTATGCTT TTTGCTTGTGAAACGTGTCATCCGCAGCATTGTGTGGGTTGGATGCATCGTGCCACGAATTACTCTCTTAGGAAACATGC ATCCATCAAGTTTAAGGGAGAGAAATTTCCATTTTTTGTCATGAAGTTTCTTAATATCTGTTTCTTTCTGTTCTTGGCAA AACAGAGCTTGATGCCTTGGAATTAGACATGGGGAATGAGACTGAAGCTGATGGAGTCCCCTCGTACCTCCAACCTGATA AAGAACCTGATTTGGACGCAGAGCTTAACTTACCTTCAGCTCCAACAGGACAAACAGCAGATCCACATGGCAGATTTAAT GCTCAGGTATAGTTTCCCCCCCATTTTATTTTATCAAGAAGAGAATTATTTTGTCCTATCAGAGTTTAGTTGTTAAAGCT ATACCTAAAATTTGGCACTAAAGGGTGAAAAGGCAACATGGTTATTGATTCAATGTATAAAATGTTGGAAAAGCTATAGG AAAAACAATTGTCTAGACATCAAGATGTTTTGCTTTTATAGATAATCTAGTTAGGTGGATCATTGGGGTTTCGGATTTCT AAAGCAGGTGA
CDS sequence (LotjaGi5g1v0255600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAGAGTCTTCGGTGTCAAGAAGAACAAGGAACCCCCTCCTTCCGTCGCCGATGCCTCCGATAGGATTACGAAACG AGGTGATTCGGTGGAGGAGAAGATTAAGAAGCTTGATGCTGAACTTACTAGATACAAAGAACAGATCAAGAAAACTAGAC CTGGTCCTGCCCAGGAAGCTGTTAAAGCTAGAGCCATGAGAGTTCTTAAGCAAAAACGAATGTATGAAGGCCAACGTGAT ATGCTGTATAATCAGACATTCAATCTTGATCAAGTTCAATTTGCTGCTGAGGGGATTAAAGATGCTCAACAAACTATGAC AGCTTTGAAGTCTGCCAATAAGGAATTGAAGGGAATGATGAAAACTGTGAAGATCCAAGACATTGATAACTTGCAAGATG AGATGATGGACCTGATGGATGTAAGTAATGAAATCCAAGAGACTTTGGGTAGAAGCTACAATGTGCCTGATGACATTGAC GAGGATGAACTTATGGGTGAGCTTGATGCCTTGGAATTAGACATGGGGAATGAGACTGAAGCTGATGGAGTCCCCTCGTA CCTCCAACCTGATAAAGAACCTGATTTGGACGCAGAGCTTAACTTACCTTCAGCTCCAACAGGACAAACAGCAGATCCAC ATGGCAGATTTAATGCTCAGATAATCTAG
Protein sequence (LotjaGi5g1v0255600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRVFGVKKNKEPPPSVADASDRITKRGDSVEEKIKKLDAELTRYKEQIKKTRPGPAQEAVKARAMRVLKQKRMYEGQRD MLYNQTFNLDQVQFAAEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSNEIQETLGRSYNVPDDID EDELMGELDALELDMGNETEADGVPSYLQPDKEPDLDAELNLPSAPTGQTADPHGRFNAQII
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 28 | 28 | - | – | |
PANTHER | 1 | 219 | 219 | 9.4E-126 | – | |
PANTHER | 1 | 219 | 219 | 9.4E-126 | – | |
Pfam | 12 | 209 | 198 | 1.2E-55 | ||
Coils | 28 | 48 | 21 | - | – | |
Coils | 99 | 119 | 21 | - | – | |
Coils | 128 | 148 | 21 | - | – | |
MobiDBLite | 179 | 222 | 44 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Vacuolar transport | The directed movement of substances into, out of or within a vacuole. |
Expression pattern of LotjaGi5g1v0255600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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