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LotjaGi5g1v0255600.3

Overview

Field Value
Gene ID LotjaGi5g1v0255600
Transcript ID LotjaGi5g1v0255600.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Charged multivesicular body protein 5; TAIR: AT5G04850.1 SNF7 family protein; Swiss-Prot: sp|Q54JK4|CHMP5_DICDI Charged multivesicular body protein 5; TrEMBL-Plants: tr|I3SD74|I3SD74_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0255600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:56460792..56463441) extracted from Lotus japonicus Gifu genome v1.2.

GTCAAGAAGAACAAGGAACCCCCTCCTTCCGTCGCCGATGCCTCCGATAGGGTTCGCTTCCTCTCTCAATTTTCATACTC TCCCAGATCTCATCAATTTTCGCATTGTCTTTTTAACCTAACTGCATAAACCCTAAATTTGTGTTCGAATTTCATGCGTG TAGATTAGATTTTGCATAATTGGGTGTAATGTTATAGATCGATGCATGATTTTCTATAGTTGCATAACAATTTGTGGTAG TTGGTAGTTTCAATTAATTATCTATTTGGTGATCAAGTGTAATTGTTATGGATGTTCTAGATTACGAAACGAGGTGATTC GGTGGAGGAGAAGATTAAGAAGCTTGATGCTGAACTTACTAGATACAAAGAACAGATCAAGAAAACTAGACCTGGTCCTG CCCAGGAAGCTGTTAAAGCTAGAGCCATGAGAGTTCTTAAGCAAAAACGAATGTAAGTTGCTTTATTCATCATATCAATT AACCTAAAGTTATAGACAAGCAATTGGCAACTAAGTAAGAATAGGAGTACTTGCCATTTTTACTTTTAATATGTAGGAAG TTGGAATTGAAAAAGGGGAAATCATTTATAGCTGTATTCATATAGCAATAAGCCAATGTTGTTAATTGCGGATCGCGGGA AATAGCGGAAAGCAAAAAATCTGCTATTTCCCGCCCTCATAGCGGACAATATTATATAGCTGTATTCATATGGCAATATA CTATGCATTTTGTCAGGTATGAAGGCCAACGTGATATGCTGTATAATCAGACATTCAATCTTGATCAAGTTCAATTTGCT GCTGAGGGGATTAAAGATGCTCAACAAACTGTATGTATCCATGAACTTGATCCTTGTATTGAAACTCCTTTTTCCTTATC CATCTGTATAACATCTTTGATCTGTTCAAGCATATGCGGCTCGTTTAATTCATAACAAAAGACATTTTTATGAAAAAAAT CCTGCAGATGAAATAAAATAATTTATGGCATGGCTTCATCACTCCCTCTCTAAAAGCAAATGATAATTGGTTGCATCATT GCAGTAGTGCCTAATGTTATTAGCAGTGAGGCTTATTAGCGGTGTTGTTATTGAAAGGGGAAACTTATTTGAATTTGTAG TTCTTGTTATATTATTTTATGAGTTTTCCTGAGGGGTTAGCCTTAGTAACAAGGTGCTGCCTTGTAACCTAGTGGTCACA GATTAGGAAAACGGCCTACCCACTTGCAGGGTGTGGCTGTGTTTGTTTGAGATATTACCTTTTCTAGACACCTTAACCGT CGGAGTCTTGTGCAATAGTGGGTTACCCTTTCATTTGAGTTTATCTTGTTTTTTAAAATACAAATTATCTGGATGTCTGT ATATTTATAATTTTTACAAATTTGACAATGCCAATTGTATGCTATATCAAGTGTAGTTGACAGAGGAAACTATATTCACT GTAAAAATTCGTTTGTCTTGGTAGCGCTTTAAGGGGCATGGTTCGACGCGGAGCTTTGTCTGTATCCTGTTTGGGACCTG CTGCCTACCTCAGGAGAGGTAGGGGATGAATCGTTTGTCACTTGGGAGGGGTGTCTTCATAAATGTTTTTTTTAATCATG AGTTATATTTATGTTATAACATATCCTAATATGTGTCTGAATTTTCAGAAATCCGATGTCCTCGAAGAATATTTTGCCAA TTAGATGTAACATTTGAATTGACATTGTTTAAAACTTTCTCTTTCTTTCCCTCCCCCTTTTCAGATGACAGCTTTGAAGT CTGCCAATAAGGAATTGAAGGGAATGATGAAAACTGTGAAGATCCAAGACATTGATGTATGCACTCTCTTTTCTTTTCTT TTAGCTTCTATTTATCCAACAATGAGAATTTGAGGTCTTAATTGTTGATCCATTTTGTAGAACTTGCAAGATGAGATGAT GGACCTGATGGATGTAAGTAATGAAATCCAAGAGACTTTGGGTAGAAGCTACAATGTGCCTGATGACATTGACGAGGATG AACTTATGGGTGGTAAGTTAGGAATTTGTTTAGGCTTTTGAGATTTAAGCTGACCACACACCTTTTCAATAACTCCAAGC TAATACAGCTACACTGTCTGGTATGGCCATATCTGTAGGGTTGTGGGGTTTTGTTGCTGTTTGATGAAAAATTATTTCTA TTTTATGGGTTTAGCTTCCTAGTTTGAATGAAAAGATGTGAAATATCCAATGGAGTATGCTTTTTGCTTGTGAAACGTGT CATCCGCAGCATTGTGTGGGTTGGATGCATCGTGCCACGAATTACTCTCTTAGGAAACATGCATCCATCAAGTTTAAGGG AGAGAAATTTCCATTTTTTGTCATGAAGTTTCTTAATATCTGTTTCTTTCTGTTCTTGGCAAAACAGAGCTTGATGCCTT GGAATTAGACATGGGGAATGAGACTGAAGCTGATGGAGTCCCCTCGTACCTCCAACCTGATAAAGAACCTGATTTGGACG CAGAGCTTAACTTACCTTCAGCTCCAACAGGACAAACAGCAGATCCACATGGCAGATTTAATGCTCAGGTATAGTTTCCC CCCCATTTTATTTTATCAAGAAGAGAATTATTTTGTCCTATCAGAGTTTAGTTGTTAAAGCTATACCTAAAATTTGGCAC TAAAGGGTGA 

CDS sequence (LotjaGi5g1v0255600.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGAGTTCTTAAGCAAAAACGAATGTATGAAGGCCAACGTGATATGCTGTATAATCAGACATTCAATCTTGATCAAGT TCAATTTGCTGCTGAGGGGATTAAAGATGCTCAACAAACTATGACAGCTTTGAAGTCTGCCAATAAGGAATTGAAGGGAA TGATGAAAACTGTGAAGATCCAAGACATTGATAACTTGCAAGATGAGATGATGGACCTGATGGATGTAAGTAATGAAATC CAAGAGACTTTGGGTAGAAGCTACAATGTGCCTGATGACATTGACGAGGATGAACTTATGGGTGAGCTTGATGCCTTGGA ATTAGACATGGGGAATGAGACTGAAGCTGATGGAGTCCCCTCGTACCTCCAACCTGATAAAGAACCTGATTTGGACGCAG AGCTTAACTTACCTTCAGCTCCAACAGGACAAACAGCAGATCCACATGGCAGATTTAATGCTCAGTATCAGAGTTTAGTT GTTAAAGCTATACCTAAAATTTGGCACTAA 

Protein sequence (LotjaGi5g1v0255600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRVLKQKRMYEGQRDMLYNQTFNLDQVQFAAEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSNEI QETLGRSYNVPDDIDEDELMGELDALELDMGNETEADGVPSYLQPDKEPDLDAELNLPSAPTGQTADPHGRFNAQYQSLV VKAIPKIWH 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 156 156 1.2E-92
PANTHER 1 156 156 1.2E-92
Pfam 1 144 144 1.7E-43
Coils 34 54 21 -
Coils 63 83 21 -
MobiDBLite 115 150 36 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Vacuolar transport The directed movement of substances into, out of or within a vacuole.

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0255600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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