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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0255600 |
| Transcript ID | LotjaGi5g1v0255600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Charged multivesicular body protein 5; TAIR: AT5G04850.1 SNF7 family protein; Swiss-Prot: sp|Q54JK4|CHMP5_DICDI Charged multivesicular body protein 5; TrEMBL-Plants: tr|I3SD74|I3SD74_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0255600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56460792..56463441) extracted from Lotus japonicus Gifu genome v1.2.
GTCAAGAAGAACAAGGAACCCCCTCCTTCCGTCGCCGATGCCTCCGATAGGGTTCGCTTCCTCTCTCAATTTTCATACTC TCCCAGATCTCATCAATTTTCGCATTGTCTTTTTAACCTAACTGCATAAACCCTAAATTTGTGTTCGAATTTCATGCGTG TAGATTAGATTTTGCATAATTGGGTGTAATGTTATAGATCGATGCATGATTTTCTATAGTTGCATAACAATTTGTGGTAG TTGGTAGTTTCAATTAATTATCTATTTGGTGATCAAGTGTAATTGTTATGGATGTTCTAGATTACGAAACGAGGTGATTC GGTGGAGGAGAAGATTAAGAAGCTTGATGCTGAACTTACTAGATACAAAGAACAGATCAAGAAAACTAGACCTGGTCCTG CCCAGGAAGCTGTTAAAGCTAGAGCCATGAGAGTTCTTAAGCAAAAACGAATGTAAGTTGCTTTATTCATCATATCAATT AACCTAAAGTTATAGACAAGCAATTGGCAACTAAGTAAGAATAGGAGTACTTGCCATTTTTACTTTTAATATGTAGGAAG TTGGAATTGAAAAAGGGGAAATCATTTATAGCTGTATTCATATAGCAATAAGCCAATGTTGTTAATTGCGGATCGCGGGA AATAGCGGAAAGCAAAAAATCTGCTATTTCCCGCCCTCATAGCGGACAATATTATATAGCTGTATTCATATGGCAATATA CTATGCATTTTGTCAGGTATGAAGGCCAACGTGATATGCTGTATAATCAGACATTCAATCTTGATCAAGTTCAATTTGCT GCTGAGGGGATTAAAGATGCTCAACAAACTGTATGTATCCATGAACTTGATCCTTGTATTGAAACTCCTTTTTCCTTATC CATCTGTATAACATCTTTGATCTGTTCAAGCATATGCGGCTCGTTTAATTCATAACAAAAGACATTTTTATGAAAAAAAT CCTGCAGATGAAATAAAATAATTTATGGCATGGCTTCATCACTCCCTCTCTAAAAGCAAATGATAATTGGTTGCATCATT GCAGTAGTGCCTAATGTTATTAGCAGTGAGGCTTATTAGCGGTGTTGTTATTGAAAGGGGAAACTTATTTGAATTTGTAG TTCTTGTTATATTATTTTATGAGTTTTCCTGAGGGGTTAGCCTTAGTAACAAGGTGCTGCCTTGTAACCTAGTGGTCACA GATTAGGAAAACGGCCTACCCACTTGCAGGGTGTGGCTGTGTTTGTTTGAGATATTACCTTTTCTAGACACCTTAACCGT CGGAGTCTTGTGCAATAGTGGGTTACCCTTTCATTTGAGTTTATCTTGTTTTTTAAAATACAAATTATCTGGATGTCTGT ATATTTATAATTTTTACAAATTTGACAATGCCAATTGTATGCTATATCAAGTGTAGTTGACAGAGGAAACTATATTCACT GTAAAAATTCGTTTGTCTTGGTAGCGCTTTAAGGGGCATGGTTCGACGCGGAGCTTTGTCTGTATCCTGTTTGGGACCTG CTGCCTACCTCAGGAGAGGTAGGGGATGAATCGTTTGTCACTTGGGAGGGGTGTCTTCATAAATGTTTTTTTTAATCATG AGTTATATTTATGTTATAACATATCCTAATATGTGTCTGAATTTTCAGAAATCCGATGTCCTCGAAGAATATTTTGCCAA TTAGATGTAACATTTGAATTGACATTGTTTAAAACTTTCTCTTTCTTTCCCTCCCCCTTTTCAGATGACAGCTTTGAAGT CTGCCAATAAGGAATTGAAGGGAATGATGAAAACTGTGAAGATCCAAGACATTGATGTATGCACTCTCTTTTCTTTTCTT TTAGCTTCTATTTATCCAACAATGAGAATTTGAGGTCTTAATTGTTGATCCATTTTGTAGAACTTGCAAGATGAGATGAT GGACCTGATGGATGTAAGTAATGAAATCCAAGAGACTTTGGGTAGAAGCTACAATGTGCCTGATGACATTGACGAGGATG AACTTATGGGTGGTAAGTTAGGAATTTGTTTAGGCTTTTGAGATTTAAGCTGACCACACACCTTTTCAATAACTCCAAGC TAATACAGCTACACTGTCTGGTATGGCCATATCTGTAGGGTTGTGGGGTTTTGTTGCTGTTTGATGAAAAATTATTTCTA TTTTATGGGTTTAGCTTCCTAGTTTGAATGAAAAGATGTGAAATATCCAATGGAGTATGCTTTTTGCTTGTGAAACGTGT CATCCGCAGCATTGTGTGGGTTGGATGCATCGTGCCACGAATTACTCTCTTAGGAAACATGCATCCATCAAGTTTAAGGG AGAGAAATTTCCATTTTTTGTCATGAAGTTTCTTAATATCTGTTTCTTTCTGTTCTTGGCAAAACAGAGCTTGATGCCTT GGAATTAGACATGGGGAATGAGACTGAAGCTGATGGAGTCCCCTCGTACCTCCAACCTGATAAAGAACCTGATTTGGACG CAGAGCTTAACTTACCTTCAGCTCCAACAGGACAAACAGCAGATCCACATGGCAGATTTAATGCTCAGGTATAGTTTCCC CCCCATTTTATTTTATCAAGAAGAGAATTATTTTGTCCTATCAGAGTTTAGTTGTTAAAGCTATACCTAAAATTTGGCAC TAAAGGGTGA
CDS sequence (LotjaGi5g1v0255600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAGTTCTTAAGCAAAAACGAATGTATGAAGGCCAACGTGATATGCTGTATAATCAGACATTCAATCTTGATCAAGT TCAATTTGCTGCTGAGGGGATTAAAGATGCTCAACAAACTATGACAGCTTTGAAGTCTGCCAATAAGGAATTGAAGGGAA TGATGAAAACTGTGAAGATCCAAGACATTGATAACTTGCAAGATGAGATGATGGACCTGATGGATGTAAGTAATGAAATC CAAGAGACTTTGGGTAGAAGCTACAATGTGCCTGATGACATTGACGAGGATGAACTTATGGGTGAGCTTGATGCCTTGGA ATTAGACATGGGGAATGAGACTGAAGCTGATGGAGTCCCCTCGTACCTCCAACCTGATAAAGAACCTGATTTGGACGCAG AGCTTAACTTACCTTCAGCTCCAACAGGACAAACAGCAGATCCACATGGCAGATTTAATGCTCAGTATCAGAGTTTAGTT GTTAAAGCTATACCTAAAATTTGGCACTAA
Protein sequence (LotjaGi5g1v0255600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRVLKQKRMYEGQRDMLYNQTFNLDQVQFAAEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSNEI QETLGRSYNVPDDIDEDELMGELDALELDMGNETEADGVPSYLQPDKEPDLDAELNLPSAPTGQTADPHGRFNAQYQSLV VKAIPKIWH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 156 | 156 | 1.2E-92 | – | |
| PANTHER | 1 | 156 | 156 | 1.2E-92 | – | |
| Pfam | 1 | 144 | 144 | 1.7E-43 | ||
| Coils | 34 | 54 | 21 | - | – | |
| Coils | 63 | 83 | 21 | - | – | |
| MobiDBLite | 115 | 150 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Vacuolar transport | The directed movement of substances into, out of or within a vacuole. |
Expression pattern of LotjaGi5g1v0255600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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