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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0259000 |
| Transcript ID | LotjaGi5g1v0259000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Drebrin-like protein; TAIR: AT4G02920.1 hypothetical protein; Swiss-Prot: sp|P34358|CED7_CAEEL ABC transporter ced-7; TrEMBL-Plants: tr|I1JFC8|I1JFC8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0259000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56724264..56728348) extracted from Lotus japonicus Gifu genome v1.2.
AATTAAGCAGTCCAAGGTTGAAGAAGAAGACAACAACAACCAACTTGTTCCTTGTCCTCTACGGGGATTACAACCTGGAT TTTCACTTGGTGTGTGTCGACATGTCGTAGATTCCTACCATTTCGGATTCTTCTGCATTAAACTCATGGTCACAAAAAAT CCTACCAAATCATTTCAGTACCACCCAAATATTCAGATCCTCAAAAATCTTCAACAGAGGGATAAGAAGTCGATGACGCT GTGACAGAGCCATTCAAGGAGGGGAATTTCGGTTTCAAAAACCCTGTTTCTCTCTTCCCAGAAAAGATAATGCTGCAGAA ACTGTGCTTGATGACTTCTCATGGTTGCCCTCCTGGGCTTGCTTTGCAGCAAGAACTTGCCATGATGGGCAGCATCATGA AGGTGACAATTTGGTTTATTATTCATTGAGTTTAATTGCTTGATACCATCTGTGTTTTCATGTCAACAATTGTGTATGCA GCATTTTTGTAATTGACTAACTTAGTTTCTGTTCTTGAATTATTTGTTTAATACAGGCTTGTCAATGTCAACCACTATTG CCTTCTCCTTTACCAAAGCCAGAGATTTTGAGATATCAGTCTCCTAGTCTTAGGCTAAATCCATATGAGACAAGGATGAT GCAAGATGAGTGGTTTAGCTGGAATCCGTTTGTTAATCTTGACATGTCAACTCTGAGGCCTGTGTTTCCTGTTATCCAAG GTGTGCAGGCAGTTCATTGAGTTATATATTTGATTTACCAATTTGATGTTAACTCCGTATTTACAGTGTTATGTGATTTT TTGTGCACTTTCATGTATTAGTAGAATATTTGAAAGGTTCAGGTAGCAGTGCTCTCTACCGTCAGCCCGCCCTATCTTGT GTTGTGTTACTTTCAGTAATCTATTGTTTTCTTATAGACTAAGTTTAAATTTCGAATTCGACAAGCTCTGAGCTAACACA GAGCATGTTCTATTTAGGAATAGTAACTAATAATCCTGCAAATGCAGTTACAGTTTTGTGACAAAGTGGCTTGTATTCAA GTATGGGTTTCATGGCCTGACACATGGCCCTGCCTGAAAATCACGCGTTGCAAGTGGACGAGGAATTTCAATGCACCCCT CACAGTGTGGATTAATATTGATATTTGTAAATCAGTAGTTAGATCACAGACTGTACAAAACATTAGCAAGTGTGAAGATT TTAGTTTATTTGGATATGGATTTGAGAGTTGAGAAAATACTCTTTGTAATCTTCATTGATCGTTTTAGAATCTCTATATT TTGTTACAGCTAGCTGTAGGTCAAACCATGTTGTTTTTTATTTTTATGAGCACTATGGTGTAGTAAGCACAAGTTATTCT AAGAATACCAGTCAAGATGCCAGTGACTTGCTTTAAATTAAGAGGGACAAGCTGAGGCCTGCATAGAGGATTACCTCCAT GCTCTAAGGAAGCTACTCACTAGCATCTTAAGCACAAAGTACTTCTTAGGGAGAGATGACCATCAAGCAAGACTACAAAC TAAAGGAGACATTGGACCTCATCTTTATGGATCATTGGATGTGCTCCTGGTTACAATATTTTCTTCATTGTGTGTTATAT TGGTGAAATGTTAAACCCAACGACCAAAAGATTATGGTAATACCTAATCAATGAAGGTTTCTTTTCTCTCTTAGGTATGA TGTGTTGCTAGTTGCTAGATGGTAGATTTGATTATTGAGCCTGCATTTACTGCTGAGAACCCTGAGATGAATGTTCAAGA TGATGTATGCTGCTAAATCCTATGGTTTTCTGTTATGACTTATGTGTCTTACTCTAAGTTGTTTCACTTATCTTTGGTTG CAGAAACCTTTCCAAGAACAGTACTTTTCAGCCTTGGCGTCGTTAAACAATTCAATGAGCATGATCAATTTTTGCAGTCT ATCACATCTGACACTGCTGAAGCAGGGCTAGGAGGAGCACATATAGATTTGTTGTCTAACCTGATGGATTTGCAATTGTC AGGCATTGATGAACGTCAACAACTATTTCCATCTCTTGTCTACCCAAATAGCAAATTGTACATCTCAAAGCCTTTGCTAG ATATTTTTCAAAGTTCTGCCTTTAGTTCAAAGATTACCGTTCATCCAGATGGTCAAGTCACATTCATGGGTACAACAATT GAGATGAAAAATCTACTTTCTTTAGTTGCTGAGTCCTATTCATCAGAATGCACGATGCATATGGGTGAAAAACGGTCTAT GGTTATTCCATACTTCACTAGGTACAAATATGTCTACCTGTTTAAGCTTCTATTGATCACATGAAAGTCTAACTGTTTGG GTTAACTCAAATCACTATTTCATGGTATAACAGAATAATCAGCAAATTTTCTTTGTTAGAACTGTTAATCCACTGATTGA CATCATTTTTAATTATATTTCACTGTCAAAGTTAAAAGCTTGTCCAAGATATGTTTCTAAATGTGTTTCTTTTCTACTAT ACTGCGATATACTGGAGTCTTTGCAATCTGCATGATAAAACCTTAAACCTTGTTGAGTTTATTGGTTAAAACGTTTAACT TTTTTGGTTTAAACCACAAGTATCTTCCCCTGAGGCAATCTCTTGAATTGATTCTTTAATAAGCTCTTGATATTGCTATT ATAAACTTCTGTTATAGATATTATTACCTTTTGGATCCACATTGTTAACCAGCTATTTTTGTTAGTTATGTATCAAGTAA CTGACGTTTGCTGACAATCTATACGGACAGGCTAAAGATCAAGAAAGTAGAGGCCAGAAGTCTTTCCTCGACATTGGATA TTAATTCTACATTGGCTGTTCCTTTAAGGAGGTATGAAAAATATGCTTTCCGCGACAAATGGCCTCTCTCCTTACTCTGG GATATGCAAAATATGCTTTTCTAGGAAGTTATATTTATTCAAAAAATCGTTCACAATCATTCTATCATTTCTGGTCTGAG GACTTTTCTTAAATTTATCTAATGATGTGTTATATTTATGCCCTAAAGAAATATATTTAAAATCAATGTTTTTCTCTTGC TTTGCAGTCCTCAGAAGGTCAAAGTCAAGCAGTCACAAAAGAAGAACAATAAAGTAGCCAGGGAGAGGGATCTCTACAAG AAGAACTACGTACATGCATGTGAGAGCCTTCTGTTCTTGATGGTTGACAAGAGGCAAAATCGGAAAACAGCAATTCTCTC ACTGAAGAAATCTGGTCCCGAGCTTCCTGACCTCCTCACGCAATTTTCTGCCGGCATTGCCGGTACCGGCCTTGCTGTCC TGCTAACTGTGGTCTGTAAGCTAGCTACCGGAAGGGTTCCCTTTTGCACGTCTAAGCTCTTCAGCACAGGGTTTGGGTTT GGGCTGGTTTGGCTTTCTTGGGCAGTAAACAAGCTAAGGGATACAATTGTAAACATAAGCAAGAATGCTGGGAAGATAGG ACTGAAAGATGAAGAAATGATTCAAAAGGTGGATAACAACATAAGAGAAGTTTACTTCAGAGCCGCAGCATTGCTTGCAG TGGCAGTGCTAAGGCTTGCTTGAGTGGTACTGTCTCTGAAGATTTGATCATGCACAGTTCGAAAAACTGAAAGTGCCATA GGCCTAAAGCTGATCCGCGATGCAAGAACTGTTATATCTTATTTGTTGGTGAAGTGATAGCAAAGCAGAGTAATCTCGGT TTCATAGCAGTTGAACCTTTACTTGATCTTCTGAAGCACAAGATTGTGGACGTTTTGCCTTGATCATCACTACGGTATGG TTATCGTGTAGTTTCAATTATCCAAGCAAGTAACATAATAATTTTCTCAGTGTTTTTGTGGTAAGATAAATTGTAAAGTG TAATATAAAATTTTGCAATGGAATGAACTGACCGATTTGGTGAAACTGTTCAGGTTTTCCTTTCCTCAGAAGCCAGATAT GATAATATCCTGCATGAATTATTACTGCAACAAGATTTCAGTTCCTGCAAATCTGCAATCATATTCTAACAAAGTCATAA TTATTGAATATGTGCATAGTTAAATGAGGGGATAGTAGAAGAAACATAATTTATGCCACTAGACTAATACACTGAATAAG CATGA
CDS sequence (LotjaGi5g1v0259000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGCAGAAACTGTGCTTGATGACTTCTCATGGTTGCCCTCCTGGGCTTGCTTTGCAGCAAGAACTTGCCATGATGGG CAGCATCATGAAGGCTTGTCAATGTCAACCACTATTGCCTTCTCCTTTACCAAAGCCAGAGATTTTGAGATATCAGTCTC CTAGTCTTAGGCTAAATCCATATGAGACAAGGATGATGCAAGATGAGTGGTTTAGCTGGAATCCGTTTGTTAATCTTGAC ATGTCAACTCTGAGGCCTGTGTTTCCTGTTATCCAAGAAACCTTTCCAAGAACAGTACTTTTCAGCCTTGGCGTCGTTAA ACAATTCAATGAGCATGATCAATTTTTGCAGTCTATCACATCTGACACTGCTGAAGCAGGGCTAGGAGGAGCACATATAG ATTTGTTGTCTAACCTGATGGATTTGCAATTGTCAGGCATTGATGAACGTCAACAACTATTTCCATCTCTTGTCTACCCA AATAGCAAATTGTACATCTCAAAGCCTTTGCTAGATATTTTTCAAAGTTCTGCCTTTAGTTCAAAGATTACCGTTCATCC AGATGGTCAAGTCACATTCATGGGTACAACAATTGAGATGAAAAATCTACTTTCTTTAGTTGCTGAGTCCTATTCATCAG AATGCACGATGCATATGGGTGAAAAACGGTCTATGGTTATTCCATACTTCACTAGGCTAAAGATCAAGAAAGTAGAGGCC AGAAGTCTTTCCTCGACATTGGATATTAATTCTACATTGGCTGTTCCTTTAAGGAGTCCTCAGAAGGTCAAAGTCAAGCA GTCACAAAAGAAGAACAATAAAGTAGCCAGGGAGAGGGATCTCTACAAGAAGAACTACGTACATGCATGTGAGAGCCTTC TGTTCTTGATGGTTGACAAGAGGCAAAATCGGAAAACAGCAATTCTCTCACTGAAGAAATCTGGTCCCGAGCTTCCTGAC CTCCTCACGCAATTTTCTGCCGGCATTGCCGGTACCGGCCTTGCTGTCCTGCTAACTGTGGTCTGTAAGCTAGCTACCGG AAGGGTTCCCTTTTGCACGTCTAAGCTCTTCAGCACAGGGTTTGGGTTTGGGCTGGTTTGGCTTTCTTGGGCAGTAAACA AGCTAAGGGATACAATTGTAAACATAAGCAAGAATGCTGGGAAGATAGGACTGAAAGATGAAGAAATGATTCAAAAGGTG GATAACAACATAAGAGAAGTTTACTTCAGAGCCGCAGCATTGCTTGCAGTGGCAGTGCTAAGGCTTGCTTGA
Protein sequence (LotjaGi5g1v0259000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQKLCLMTSHGCPPGLALQQELAMMGSIMKACQCQPLLPSPLPKPEILRYQSPSLRLNPYETRMMQDEWFSWNPFVNLD MSTLRPVFPVIQETFPRTVLFSLGVVKQFNEHDQFLQSITSDTAEAGLGGAHIDLLSNLMDLQLSGIDERQQLFPSLVYP NSKLYISKPLLDIFQSSAFSSKITVHPDGQVTFMGTTIEMKNLLSLVAESYSSECTMHMGEKRSMVIPYFTRLKIKKVEA RSLSSTLDINSTLAVPLRSPQKVKVKQSQKKNNKVARERDLYKKNYVHACESLLFLMVDKRQNRKTAILSLKKSGPELPD LLTQFSAGIAGTGLAVLLTVVCKLATGRVPFCTSKLFSTGFGFGLVWLSWAVNKLRDTIVNISKNAGKIGLKDEEMIQKV DNNIREVYFRAAALLAVAVLRLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| PANTHER | 2 | 423 | 422 | 1.6E-178 | – | |
| PANTHER | 2 | 423 | 422 | 1.6E-178 | – | |
| Phobius | 5 | 13 | 9 | - | – | |
| Phobius | 14 | 20 | 7 | - | – | |
| Phobius | 21 | 423 | 403 | - | – | |
| Coils | 265 | 285 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0259000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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