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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0261600 |
| Transcript ID | LotjaGi5g1v0261600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-directed DNA polymerase (Reverse transcriptase); TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|F4NCJ4|F4NCJ4_BETVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0261600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:57028914..57031012) extracted from Lotus japonicus Gifu genome v1.2.
CTGTGATTTCTCACCTTCTTTTTGCAGATGATAGTATCATTTTTGCACGAGCCAATACTCAGGAGGCGGAGTGTGTTCTT GACATTCTGTCCACCTATGAGCGGGCTTCTGGTCAGGTCATTAACCTGGATAAGTCTATGCTCTCTGTGAGCCGCAATGT ACCTCAGAATGGTTTTAATGAGCTAAAGCAGCTTTTGAATGTGAAGGCAGTTGAGAGTTTTGACAAGTATCTTGGTTTAC CCACCATAATTGGTAAGTCCAAGACTAGAATTTTTAACTTTGTTCAAGATCGTGTCTGGAAGAAGCTCAAAGGGTGGAAG GAGTCCACTCTTTCCAGAGCAGGTAGAGAGGTCTTGATTAAGTCTGTGGTGCAAGCGATACCTTCTTATGTTATGTCATG TTTTATTTTACCTGATTCTCTCTGTGCAGAAATTGAAAGGATGATGTCCCAATTTTACTGGGGTGGCGATGTCGATAAGA GGGGCCTCCAATGGGCTAGCTGGCAAAAGTTAACTCGTTCAAAATTTGATGGCGGACTTGGTTTTCGTGACTTTAAGTCT TTTAATATTGCCCTTGTGGCTAAGAATTGGTGGAGAATTTATACCCAACCTGAAACTTTGCTTGCTCAAGTTTTCAAGGG GGTGTATTTTGCGCAAGGTGATCTATTGGGGGCCAAACGTGGCTATCGTCCAAGCTATGCTTGGTCTAGTATCTTGCGGT CCAGCTGGATTTTTCATGAGGGTGGTCGTTGGAAAATTGGTGATGGTAGTCAGGTTGATATTCTTCATGATCAGTGGCTA CCTCAGGGGGTACCTGTTATAGGTAGTCAGGATTTAATGACTGAATTTGGAGTGTCCAGGGTCTCTCATTTAATTGATCA TACGACCAAAACTTGGAAGTATGCTTTGGTGGATTTTATTTTTCACCCAGCCACTGTTTCTCATATTTTAAAAATTCCTT TGCCTTTGAATGGTAGTGTTGATACTCTAATGTGGCCAGAAACTGTTGATGGCAATTATTGTTCCAAATCTGGTTATATT TTTGTTCGCAGGAAGCTCCTTGGCGCTTGTTCGTCATCCTCTTCCCAGCCATCGCTTCCAGCTCCTTTGTGGAAGAAGTT TTGGCGTACTAGTGCCCAACCCCGTTGCAAGGAGGTGGCGTGGCGTGTGGTCTCATCTTTACTTCCGGTCCGTGCCACGC TTCGTCGGAGAGGCATGGATGTTGATCCTTTGTGCCCAGTGTGTGCTAATGAGGAGGAGACTGTGTTTCACTTGTTCGTG TCTTGTCCAGTGGCCCAGAATTTCTGGTTTGGCTCTCCCCTTTCCCTTCGTGTGCACGAATTTAGCTCCATGGAGGACTT CTTGGCGGTTTTTTTCCGAGCAGCTGATGATGATGCCCTCGCATTATGGCAGGCGGGAGTGTACGCTCTTTGGGAGATGC GCAACCGTGTTGTTTTCCGAGATGGTGAGATTCCTGTGCCCGTAGCGGTCGTGATCCAGCGATGTTCCATGCTAGCTGCT GCGCCGGTGTCAGAGGTAACGGTGATGCCTAGACCAGCTCTGTTGTTGCAGGCAACTTGGGCGCGGCCACCTCAAGGTAT CTACAAGCTGAATTTTGATGCAGCTGTGGCTACCACGGGAGAGGTGGGTTTTGGTTTGATTGTGAGGAATATGTTGGGCG AGGTTCTTGCTTCTGCAGCACAATATCTTCTCCATGCAGCTTCAGCGATCCTTGGGGAGGCATTAGCCTTTCGCTGGTCT ATGCAGCTTGCCGTTCAGATGGGTTTTCGTCGGGTGCTTTTTGAGACGGATTGTCTGCAGCTGATCCAGCTCTGGAAGAA ACCTCCAAATGGTCGATCGTATTTATCTAGTATTGTTAGTGATTGTTTTATGTTGTCTCGTTCTTTTGATTATGTTGACT TGTCTTTTGTTCGCCGTGGGGGCAATTCTGTTGCTGATTTCTTAGCTGGTACCGCTTCCAAGTATACTGATATGGTTTGG TTGGAAGAGGTCCCTAGGGAGGTCATAACTTTGGTTCATGAGGATGTAATGACTTCTATGTCTGTTTCTGATGAATGAAT TTGCAGTTTCCTTTCAAAA
CDS sequence (LotjaGi5g1v0261600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCTCTGTGAGCCGCAATGTACCTCAGAATGGTTTTAATGAGCTAAAGCAGCTTTTGAATGTGAAGGCAGTTGAGAG TTTTGACAAGTATCTTGGTTTACCCACCATAATTGGTAAGTCCAAGACTAGAATTTTTAACTTTGTTCAAGATCGTGTCT GGAAGAAGCTCAAAGGGTGGAAGGAGTCCACTCTTTCCAGAGCAGGTAGAGAGGTCTTGATTAAGTCTGTGGTGCAAGCG ATACCTTCTTATGTTATGTCATGTTTTATTTTACCTGATTCTCTCTGTGCAGAAATTGAAAGGATGATGTCCCAATTTTA CTGGGGTGGCGATGTCGATAAGAGGGGCCTCCAATGGGCTAGCTGGCAAAAGTTAACTCGTTCAAAATTTGATGGCGGAC TTGGTTTTCGTGACTTTAAGTCTTTTAATATTGCCCTTGTGGCTAAGAATTGGTGGAGAATTTATACCCAACCTGAAACT TTGCTTGCTCAAGTTTTCAAGGGGGTGTATTTTGCGCAAGGTGATCTATTGGGGGCCAAACGTGGCTATCGTCCAAGCTA TGCTTGGTCTAGTATCTTGCGGTCCAGCTGGATTTTTCATGAGGGTGGTCGTTGGAAAATTGGTGATGGTAGTCAGGTTG ATATTCTTCATGATCAGTGGCTACCTCAGGGGGTACCTGTTATAGGTAGTCAGGATTTAATGACTGAATTTGGAGTGTCC AGGGTCTCTCATTTAATTGATCATACGACCAAAACTTGGAAGTATGCTTTGGTGGATTTTATTTTTCACCCAGCCACTGT TTCTCATATTTTAAAAATTCCTTTGCCTTTGAATGGTAGTGTTGATACTCTAATGTGGCCAGAAACTGTTGATGGCAATT ATTGTTCCAAATCTGGTTATATTTTTGTTCGCAGGAAGCTCCTTGGCGCTTGTTCGTCATCCTCTTCCCAGCCATCGCTT CCAGCTCCTTTGTGGAAGAAGTTTTGGCGTACTAGTGCCCAACCCCGTTGCAAGGAGGTGGCGTGGCGTGTGGTCTCATC TTTACTTCCGGTCCGTGCCACGCTTCGTCGGAGAGGCATGGATGTTGATCCTTTGTGCCCAGTGTGTGCTAATGAGGAGG AGACTGTGTTTCACTTGTTCGTGTCTTGTCCAGTGGCCCAGAATTTCTGGTTTGGCTCTCCCCTTTCCCTTCGTGTGCAC GAATTTAGCTCCATGGAGGACTTCTTGGCGGTTTTTTTCCGAGCAGCTGATGATGATGCCCTCGCATTATGGCAGGCGGG AGTGTACGCTCTTTGGGAGATGCGCAACCGTGTTGTTTTCCGAGATGGTGAGATTCCTGTGCCCGTAGCGGTCGTGATCC AGCGATGTTCCATGCTAGCTGCTGCGCCGGTGTCAGAGGTAACGGTGATGCCTAGACCAGCTCTGTTGTTGCAGGCAACT TGGGCGCGGCCACCTCAAGGTATCTACAAGCTGAATTTTGATGCAGCTGTGGCTACCACGGGAGAGGTGGGTTTTGGTTT GATTGTGAGGAATATGTTGGGCGAGGTTCTTGCTTCTGCAGCACAATATCTTCTCCATGCAGCTTCAGCGATCCTTGGGG AGGCATTAGCCTTTCGCTGGTCTATGCAGCTTGCCGTTCAGATGGGTTTTCGTCGGGTGCTTTTTGAGACGGATTGTCTG CAGCTGATCCAGCTCTGGAAGAAACCTCCAAATGGTCGATCGTATTTATCTAGTATTGTTAGTGATTGTTTTATGTTGTC TCGTTCTTTTGATTATGTTGACTTGTCTTTTGTTCGCCGTGGGGGCAATTCTGTTGCTGATTTCTTAGCTGGTACCGCTT CCAAGTATACTGATATGGTTTGGTTGGAAGAGGTCCCTAGGGAGGTCATAACTTTGGTTCATGAGGATGTAATGACTTCT ATGTCTGTTTCTGATGAATGA
Protein sequence (LotjaGi5g1v0261600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSVSRNVPQNGFNELKQLLNVKAVESFDKYLGLPTIIGKSKTRIFNFVQDRVWKKLKGWKESTLSRAGREVLIKSVVQA IPSYVMSCFILPDSLCAEIERMMSQFYWGGDVDKRGLQWASWQKLTRSKFDGGLGFRDFKSFNIALVAKNWWRIYTQPET LLAQVFKGVYFAQGDLLGAKRGYRPSYAWSSILRSSWIFHEGGRWKIGDGSQVDILHDQWLPQGVPVIGSQDLMTEFGVS RVSHLIDHTTKTWKYALVDFIFHPATVSHILKIPLPLNGSVDTLMWPETVDGNYCSKSGYIFVRRKLLGACSSSSSQPSL PAPLWKKFWRTSAQPRCKEVAWRVVSSLLPVRATLRRRGMDVDPLCPVCANEEETVFHLFVSCPVAQNFWFGSPLSLRVH EFSSMEDFLAVFFRAADDDALALWQAGVYALWEMRNRVVFRDGEIPVPVAVVIQRCSMLAAAPVSEVTVMPRPALLLQAT WARPPQGIYKLNFDAAVATTGEVGFGLIVRNMLGEVLASAAQYLLHAASAILGEALAFRWSMQLAVQMGFRRVLFETDCL QLIQLWKKPPNGRSYLSSIVSDCFMLSRSFDYVDLSFVRRGGNSVADFLAGTASKYTDMVWLEEVPREVITLVHEDVMTS MSVSDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 14 | 639 | 626 | 1.2E-134 | – | |
| Pfam | 319 | 390 | 72 | 1.2E-19 | ||
| SUPERFAMILY | 489 | 616 | 128 | 6.64E-7 | ||
| Gene3D | 489 | 618 | 130 | 6.0E-9 | ||
| CDD | 491 | 610 | 120 | 1.3178E-18 | – | |
| Pfam | 492 | 611 | 120 | 1.8E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi5g1v0261600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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