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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0262100 |
| Transcript ID | LotjaGi5g1v0262100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alpha-1,3-glucosyltransferase; TAIR: AT2G44660.1 ALG6, ALG8 glycosyltransferase family; Swiss-Prot: sp|O80505|ALG8_ARATH Probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase; TrEMBL-Plants: tr|I1KRW2|I1KRW2_SOYBN Alpha-1,3-glucosyltransferase; Found in the gene: LotjaGi5g1v0262100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:57093255..57095940) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCAGATAAAGGGCTTGCTTTCATATTCAGAAAACTTGGGTTTAATATCCAGACACCAGCAGGTTCATTCACAGCTGG GCTAGTAGGGGATTCCTCACCTTTTTCTGTACTACCTCAGGTAAGATTTATGCTCATGTTTTCTCTGAATAACTGGTTGT TATCAAACTGGGGAAAAAAGCACACAAGGGGATGGTTATCACCCATGTAAAACTTATCACATTCTTGCATCAGAACAAAC AGATGATTTACATACCTTATTTGATGCATGCTTTTCATTAGTAGGAGAGCGAGGGGTGGTGTTATATTGCTTCAAGCTTG TAATTGGGAATCTAGCCACTGAGATTGGAATGTTTTTTCTAAACATGCTGAAAATATTGCTAATTTACTTAATTACCCTC ATCCCATTTTCTAAGTAAAGAAATATAGATTATAATATTAATATTCACATGGGAGCCTTGACATGGTAACTCAAAATCAG CCCTAGTCCAACATTTAGATGTCATGTGATATCAGTGAAACATTATAATTGGTAGTAGAAAGCATAATATTAGTTTCATT TTACACATTCCAAGCTAGCCATTGCATCTTCCAAGATGCTTCTCTTCAATTGATATCAACAACTGAGCCTAATCACTGGT TGACGTTGTTCTTGTTAGAAATATAATATAATATAAAATCGTTCATGTTTGCGTTACCCAACAACTTTTGGGATAGTTGG TTCATGACATTGTATCAGAGCCTCTATGACCGAGTGGTCTTGAGTTCAATCCTTGTTTCCCACCATTATTCTAATAAAAA GTTGAATTTAAGAAGCAGATGTTAGGTGTAACTTCTAAGTCTAGTGGGGTCTCGTGTGAGAGGGTGTTAGAAATATAATG TAAAATCATTCATGTTCCCATTACCCAACAACTTAAACTTTTGAGATAGTTGGTTCATGACCGTTCTCATTTCCAAAATA AATATAAAATATAGATCATAAATATAAATGCCCATGGGCAGGCTCAATTTGGTAATTTGAAATCAGAACCAGTCTGATAT CAAAAAAGTTATATTTGTGAAACATTGTGACTGGTGGGAGAATGCATAATATTAGCTTTTACATTTTATACATTTTAGGC TAGCTATTGGCTATTGCAACTTCCAAGATGCTTCTGTTCAATTGAGATCAGCAACTGAGCTAGATAACTGGTTATTTGAA TCTACAACTATGATATAACAGTTATGTTTAGTCATACTACTTTGCACTTCATAATTCAGAATCAGAAGTTTCATCAAAAC ATTTATCTTTTCTATTTACTAATCTGCAGGTCACTCCGTCCATGACCTTTATAATGGTTCTACTTACCTTATCTCCTTGT CTTTTCAAGGCTTGGAAGAATCCACAGCCAAAGATGATTTGTAGATGGGTAGCCTATGCTTATACCTGTGGCTTTCTTTT TGGGTGGCACGTGCATGAGAAGGCATCACTCCATTTTGTAATTCCACTAGCTATTGTTGCTGCGCAAACCCTGGAGGATG CAAAGCATTACTTTTTGCTATCAATAGGTATGCTTCTAACGCTCATTCATTTGTTGGCCAGCTTACAATGCTTGCTTTTC TTTTTCTTATTTTCTTCTGTTTTTTTTAATGATACTGAAAATTTAAAATTGAAGTATACATAAAATGAAACAAATTTTAT AGAGAATGTGTGTATGTGTCTGTTAGTGGAAAACACAAGTGATGGATGTGCCCCTTTAAAGGCAATATTTTACTGAAAGT CATGAAAAAGCCGTGAACAAATTCTAGATCAACTTTATCTTTTCTAGCTAATCTTGCCTTTTGCAAATATCATCTACGAA CCAGAGAGCTTTAGAAACAGCACAAATTTCTGACACAAATAGTAGTACCACAACTACATAAAATTTTGATATTCTAATTC TCTTCATTAGCTGGTAATTCTCAGCCTGGTTTCTGTACAGTCATACTGCTGAGATTTATATTTTCATAAACTAACTACAG CTAAGATCAAAGTACACTTATGGAGCTAGAAACTATTTCCATCTTTCACAACTGTAAGAAACCAGAATAAAAGATAAGAG AAAACCAAGAAACAATTTTATTTTTTTTCCAGTGCCTCTTTTCACACTGTTGTATGTTTGCTGTCAAATATTTACAATGA GTGATTTGGAGGCCAAAGAAGCAGAAGTTGTGTGTCTGAGTCACACCATTTTGGTATCAGTGCTTCTCTTTTCCGTTTTT TGTTGCTTGGAATTCAGAGATTGCTTGTTTGTGCAGTATCCTGCTATTCACTTTTTCCGCTACTATTCGAGGCACAAGAG TATCCTATCAAAGTTCTGTTGCTGCTTCTGCACTCCATTTTGATGTGGTCAGGCTTTTCAGCACAATTTCATGATGGGAT TGAGACAAGAGCGTCAAATGCTCGTCCAAAGAAAAAGGTTGATCAATTTGGATCTAAAGGTAGTTCAGGTGAACCTGTGA AGAATGAAGGTTTTGTTATTAGCTGGATTGAGAGGATTTATCCGGTTGGTCTTGTAGTTGTAGAGATATGGGGCCAATTT TTACACCCTCTTCTTTTGGGTGATAAGCTTGCATTCGCGCCCCTTATGTTGGTCTCTATATACTGTGCTTTTGGGATCAT GTACTCTTGGATTTGGCAGCTAAGATCCATTGTTAAATCTCTTTAA
CDS sequence (LotjaGi5g1v0262100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGATAAAGGGCTTGCTTTCATATTCAGAAAACTTGGGTTTAATATCCAGACACCAGCAGGTTCATTCACAGCTGG GCTAGTAGGGGATTCCTCACCTTTTTCTGTACTACCTCAGGTCACTCCGTCCATGACCTTTATAATGGTTCTACTTACCT TATCTCCTTGTCTTTTCAAGGCTTGGAAGAATCCACAGCCAAAGATGATTTGTAGATGGGTAGCCTATGCTTATACCTGT GGCTTTCTTTTTGGGTGGCACGTGCATGAGAAGGCATCACTCCATTTTGTAATTCCACTAGCTATTGTTGCTGCGCAAAC CCTGGAGGATGCAAAGCATTACTTTTTGCTATCAATAGTATCCTGCTATTCACTTTTTCCGCTACTATTCGAGGCACAAG AGTATCCTATCAAAGTTCTGTTGCTGCTTCTGCACTCCATTTTGATGTGGTCAGGCTTTTCAGCACAATTTCATGATGGG ATTGAGACAAGAGCGTCAAATGCTCGTCCAAAGAAAAAGGTTGATCAATTTGGATCTAAAGGTAGTTCAGGTGAACCTGT GAAGAATGAAGGTTTTGTTATTAGCTGGATTGAGAGGATTTATCCGGTTGGTCTTGTAGTTGTAGAGATATGGGGCCAAT TTTTACACCCTCTTCTTTTGGGTGATAAGCTTGCATTCGCGCCCCTTATGTTGGTCTCTATATACTGTGCTTTTGGGATC ATGTACTCTTGGATTTGGCAGCTAAGATCCATTGTTAAATCTCTTTAA
Protein sequence (LotjaGi5g1v0262100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDKGLAFIFRKLGFNIQTPAGSFTAGLVGDSSPFSVLPQVTPSMTFIMVLLTLSPCLFKAWKNPQPKMICRWVAYAYTC GFLFGWHVHEKASLHFVIPLAIVAAQTLEDAKHYFLLSIVSCYSLFPLLFEAQEYPIKVLLLLLHSILMWSGFSAQFHDG IETRASNARPKKKVDQFGSKGSSGEPVKNEGFVISWIERIYPVGLVVVEIWGQFLHPLLLGDKLAFAPLMLVSIYCAFGI MYSWIWQLRSIVKSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 40 | 40 | - | – | |
| PANTHER | 2 | 253 | 252 | 2.5E-81 | ||
| PANTHER | 2 | 253 | 252 | 2.5E-81 | ||
| Pfam | 11 | 246 | 236 | 2.3E-48 | ||
| TMHMM | 13 | 30 | 18 | - | – | |
| TMHMM | 40 | 62 | 23 | - | – | |
| Phobius | 41 | 59 | 19 | - | – | |
| Phobius | 60 | 70 | 11 | - | – | |
| TMHMM | 69 | 88 | 20 | - | – | |
| Phobius | 71 | 89 | 19 | - | – | |
| Phobius | 90 | 113 | 24 | - | – | |
| TMHMM | 113 | 132 | 20 | - | – | |
| Phobius | 114 | 132 | 19 | - | – | |
| Phobius | 133 | 138 | 6 | - | – | |
| TMHMM | 139 | 158 | 20 | - | – | |
| Phobius | 139 | 157 | 19 | - | – | |
| Phobius | 158 | 223 | 66 | - | – | |
| Phobius | 224 | 245 | 22 | - | – | |
| TMHMM | 224 | 246 | 23 | - | – | |
| Phobius | 246 | 255 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Endoplasmic reticulum | The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). | ||
| Cellular component | Endoplasmic reticulum membrane | The lipid bilayer surrounding the endoplasmic reticulum. | ||
| Biological process | Oligosaccharide-lipid intermediate biosynthetic process | The chemical reactions and pathways resulting in the formation of an oligosaccharide-lipid intermediate, such as a molecule of dolichol-P-man or dolicol-P-Glc used in N-linked glycosylation. | ||
| Molecular function | Transferase activity, transferring hexosyl groups | Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor). | ||
| Molecular function | Dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase activity | Catalysis of the addition of the second glucose residue to the lipid-linked oligosaccharide precursor for N-linked glycosylation; the transfer of glucose from dolichyl phosphate glucose (Dol-P-Glc) on to the lipid-linked oligosaccharide Glc(1)Man(9)GlcNAc(2)-PP-Dol. |
Expression pattern of LotjaGi5g1v0262100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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