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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0262300 |
| Transcript ID | LotjaGi5g1v0262300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tubby-F-box-like protein; TAIR: AT2G47900.1 tubby like protein 3; Swiss-Prot: sp|Q8VY21|TLP3_ARATH Tubby-like F-box protein 3; TrEMBL-Plants: tr|I3SS20|I3SS20_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0262300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:57116549..57119211) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCGTTTCGGAGCATGATTCTCGACAGGAAGGGATTCGAGGTGAAGTTCAGCTATGGCACAAGATCCAAGTCAGAGTC AAAGAGTGACACCACCATAAAGGAGAGTTCTTTGATGGTGGTTGATGATGGGTTGAAGCAGAGTTGTTGGGCTAACATGC CACCAGAGCTTCTGAGAGATGTGCTCATGAGGATTGAAGCCTCTGAGCATAATTGGCCTGCCCGGAAGCATGTGGTGGCC TGTGCCGGCGTTTGCCGGAGCTGGAGAGACATCATGGAGGAAATTGTCAAACCGCCACAAATCTCAACCAAGTTGACATT TCCTATTTCCTTGAAGCAGGTAGGTCTAAGTCTAAGTCTAACCCCACTTTTTTAATTTTCCATAATTCATGTCATTTTAG GTTCTTATTTCAATTTATGTGATAAAGATTTGTTTTTTTTGTGGTTTTGGGTAAGTGTTACTAGTATTAGTCAAATTCAA TTCAAGTTGTCAGGTCAGCTTACAACTTGCTATTGCTAGTAAATGTTTGGAAATTTCTTCTATAGTTGATTATGAAGTCA AAATTAATTCTGTTATGACTTATGGGTAGTTTTGTCAGGATTCACTCTGAGAAAAATTTAGTTGATCCAAACATTATGCC TTTTCAGTTGAGTTAAGCTCAAAGAGCTTTGTGGTTGACTTTTACTTTGACATCATTTTGAGCTGAAGTAGTTGGGTTTT CTTCACAGTAATAGCTTATATTATGTAGTGGTACTGGTATGTGTGATCTTGATGACTATGCTATACATCACTTTGGGAAG GTTTATGAGTTATGTTGTGTATACAAGTTATTTACTGTTGGATGCTGCTGTTTTTACATGGAAGAAACTACAATCAATAA AACCTGTCAAGTCTCCATCATGTTGAGTGGTGGAGTGTTGTTACTTTACCTGTGTATGTGAAAGGGTTAGGGTGGATTAT CAACTCTTTCCTCGCCCCAAAATAGTGAGTTTTAATGAGGGAAATAAAGATGGTTGGGATGGGATCACTAAAATAAATTA AATGGTCCGATTGTAAGTTATAAATTTGTAAATTGTGGAGACTGTCTTCTTCAATTAGCTTCCTGGTGATTCATGGCACT GGTGTCTTGTGGAGTGAGATAGTATTTGTACACCCTCATTGTCCTCCTTTTTATTAAAAAGTTAGTATTCTACTTGTTGT AGTTGTGAAAGTTGGTTGAAATTGCTTTGCCTGTGCTTCAATTGAAAATATTCATCGTGATCAACTATTTCTGAAATTTT TGGTTCCTAGTATTGCAAAGTTCTTAGTTTTTTACCATGAAGGTCGTTATCCTTTTGAACTGTTCCCCCTTTCATTGCCA AGCCTTAATTGACTTCTTATTTTCATCATGCAGCCTGGTCCAAGGGATTCTCTTCTTCAGTGCTATATTAAAAGAAATCG CAGCAACCAAACATATTATCTGTTTCTTGGTTTAAACCAAGGTGAGTGTTACCAGACATTGAAATTTGATATGTGCTGTG TAATGCTTTCTAAACGTTGTGACACATAGGTTGAATTTTAGTCATCCTTTTTTCCTTGTAGCTTATACTAGTATGATATT CATAGAACAGGTCCTTTTTCTTTTTGTCTATGTCCTTTGATGCATTTTGTGATGTTGAGTGTTGACTTATATAAATTTGC AGCTTCAACTGACGATGGCAAGTTCCTTCTAGCTGCACGCAAGTGTCGGCATGCAACCCACACTGACTATATAATCTCTC TAAACCATGATGATGTGTCGAGAGGGAGTAGCACCTATATTGGGAAGTTGAGGTATTTCAGCTGATATATGACTTGACCT GTTTAACATTATCTTCTAGGTCTGAAATAACTTCTTTTTTCTTTGATAATAGATCAAACTTTCTGGGCACCAAATTCACT GTGTATGATGCACACCCTCCAATTTGTGGAGCCAAAGTTACAAAGTCTCGTTCCACCAGGCTTGTTAGTCTCAAGCAAGT ATCTCCAAGAGTTCCTGCAGGCAACTTTCCCATTGTGCATGTCTCATATGATCTGAATGTTTTGGGCTCTAGGTAGCATT GTTACTAAAATTTCTCTCACTTTTTCTATGTTGTTTATCCCCACTTTCCTTTGAAATTATGTGGAATTCTTATCAACAGT TACTAACAGTTAGTTGCCAAAATGTTAACAGGGGCCCTAGAATAATGCAATGTGTTATGGATGCCATCCCTGCCTCAGCT GTTGAACCCGGAGGCTCGGCCCCAACACAGACTCAATTTCTTCATAGCAGAATTGACGCTTCTCCATCTATCCCGTTCTT CAGATCAAAATCAACCCGCATGGAGAACCTCCCATCTGTACCTTTAACTTGTCAAAATGAGGGGATGCTAGTATTAAAAA ACAAATCCCCTAGGTGGCATGAACAACTCCAATGCTGGTGTCTGAACTTCAATGGGCGGGTGACAGTTGCTTCAGTTAAA AATTTCCAGCTGGTTGCTTCTCCTAGAAATGGAGTTTCTGAGCAGGCTCAGGAAAATGTTGTTCTACAATTCGGAAAAGT TGGAAAGGATGTGTTCACCATGGATTACCAATATCCAATCTCAGCCTTTGAAGCATTTGCAATATGCCTCAGCAGCTTTG ACACCAAGATCGCTTGTGAATGA
CDS sequence (LotjaGi5g1v0262300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTTTCGGAGCATGATTCTCGACAGGAAGGGATTCGAGGTGAAGTTCAGCTATGGCACAAGATCCAAGTCAGAGTC AAAGAGTGACACCACCATAAAGGAGAGTTCTTTGATGGTGGTTGATGATGGGTTGAAGCAGAGTTGTTGGGCTAACATGC CACCAGAGCTTCTGAGAGATGTGCTCATGAGGATTGAAGCCTCTGAGCATAATTGGCCTGCCCGGAAGCATGTGGTGGCC TGTGCCGGCGTTTGCCGGAGCTGGAGAGACATCATGGAGGAAATTGTCAAACCGCCACAAATCTCAACCAAGTTGACATT TCCTATTTCCTTGAAGCAGCCTGGTCCAAGGGATTCTCTTCTTCAGTGCTATATTAAAAGAAATCGCAGCAACCAAACAT ATTATCTGTTTCTTGGTTTAAACCAAGCTTCAACTGACGATGGCAAGTTCCTTCTAGCTGCACGCAAGTGTCGGCATGCA ACCCACACTGACTATATAATCTCTCTAAACCATGATGATGTGTCGAGAGGGAGTAGCACCTATATTGGGAAGTTGAGATC AAACTTTCTGGGCACCAAATTCACTGTGTATGATGCACACCCTCCAATTTGTGGAGCCAAAGTTACAAAGTCTCGTTCCA CCAGGCTTGTTAGTCTCAAGCAAGTATCTCCAAGAGTTCCTGCAGGCAACTTTCCCATTGTGCATGTCTCATATGATCTG AATGTTTTGGGCTCTAGGGGCCCTAGAATAATGCAATGTGTTATGGATGCCATCCCTGCCTCAGCTGTTGAACCCGGAGG CTCGGCCCCAACACAGACTCAATTTCTTCATAGCAGAATTGACGCTTCTCCATCTATCCCGTTCTTCAGATCAAAATCAA CCCGCATGGAGAACCTCCCATCTGTACCTTTAACTTGTCAAAATGAGGGGATGCTAGTATTAAAAAACAAATCCCCTAGG TGGCATGAACAACTCCAATGCTGGTGTCTGAACTTCAATGGGCGGGTGACAGTTGCTTCAGTTAAAAATTTCCAGCTGGT TGCTTCTCCTAGAAATGGAGTTTCTGAGCAGGCTCAGGAAAATGTTGTTCTACAATTCGGAAAAGTTGGAAAGGATGTGT TCACCATGGATTACCAATATCCAATCTCAGCCTTTGAAGCATTTGCAATATGCCTCAGCAGCTTTGACACCAAGATCGCT TGTGAATGA
Protein sequence (LotjaGi5g1v0262300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFRSMILDRKGFEVKFSYGTRSKSESKSDTTIKESSLMVVDDGLKQSCWANMPPELLRDVLMRIEASEHNWPARKHVVA CAGVCRSWRDIMEEIVKPPQISTKLTFPISLKQPGPRDSLLQCYIKRNRSNQTYYLFLGLNQASTDDGKFLLAARKCRHA THTDYIISLNHDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPICGAKVTKSRSTRLVSLKQVSPRVPAGNFPIVHVSYDL NVLGSRGPRIMQCVMDAIPASAVEPGGSAPTQTQFLHSRIDASPSIPFFRSKSTRMENLPSVPLTCQNEGMLVLKNKSPR WHEQLQCWCLNFNGRVTVASVKNFQLVASPRNGVSEQAQENVVLQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIA CE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 402 | 402 | 5.3E-205 | – | |
| PANTHER | 1 | 402 | 402 | 5.3E-205 | – | |
| SUPERFAMILY | 43 | 92 | 50 | 7.72E-5 | ||
| Pfam | 49 | 99 | 51 | 4.7E-8 | ||
| SUPERFAMILY | 99 | 402 | 304 | 7.85E-97 | ||
| Gene3D | 107 | 402 | 296 | 1.6E-94 | ||
| Pfam | 113 | 397 | 285 | 1.9E-90 | ||
| PRINTS | 165 | 181 | 17 | 1.3E-73 | ||
| PRINTS | 181 | 205 | 25 | 1.3E-73 | ||
| PRINTS | 230 | 257 | 28 | 1.3E-73 | ||
| PRINTS | 314 | 331 | 18 | 1.3E-73 | ||
| PRINTS | 332 | 348 | 17 | 1.3E-73 | ||
| PRINTS | 359 | 378 | 20 | 1.3E-73 | ||
| PRINTS | 380 | 402 | 23 | 1.3E-73 | ||
| ProSitePatterns | 387 | 402 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0262300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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