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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0265400 |
| Transcript ID | LotjaGi5g1v0265400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium-binding family protein; TAIR: AT4G27280.1 Calcium-binding EF-hand family protein; Swiss-Prot: sp|Q9LSQ6|PBP1_ARATH Calcium-binding protein PBP1; TrEMBL-Plants: tr|I3S1Q8|I3S1Q8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0265400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:57612849..57613850) extracted from Lotus japonicus Gifu genome v1.2.
CAGACTTTAGTTAGGAAAAAGATGGAAAATTTGCAAATTGACAACCAACGTCTTTCACATCTCGTAGACAGTTCTACCCT CATGAGAGACCTTCTGCGAAAGCCCCAGGCAAGTAGCACCAAGACCAATCCAACACAGCACAACTCAACCTCTTCCTCAT CTCTACCTTTGTTGTCCTCTTGCAACCACCCCTCTCCTTCTTGGAAAAAACCACTCAATTAATGCACTTCGTCTCCTCTT CCCCTTTCTATATATATATAATATAACCACATTCCCTTCTTCTTCTGCGCCACCCATTCTTATCCATTTCTCTCTTTCTT CTATAATGGCATCACAAAATCCACAACCCCATCATTTCCATGACTCCCTTCCATTCATGGCGAACAAGCTAGGCGGCGAC GGCCTCATAGACGAGCTCTGCAACGGGTTCAACCTCTTGAAGGACTCTGAAAAAGGTGTCATCACTTTCGACAGCCTCAA GAGGAATTCTGCTCTGCTGGGCCTGCAAGGTTTCAGCGATGAGGATCTTCGCTTGATGCTCCGGCAAGGTGATTTTGACG GCGATGGCGCGCTTATCCAGTTGGAGTTCTGTGTTTTGATGTTTAGATTGAGCCCTGAACTCATGGAGGGGTCTCAGTTG TGGTTGGAGGAAGCCCTTCAGCAAGAACTTAGAGATGATGGTTGTTGAAATGTTGTTGTTGTGTTTCTTTGGTAACTTTT GGAAATTGTATCGTACATGTTTGACTTGTGAGAAGAGAGGGGCCGGGAAAAAATAGCATTTGACAATTCCTCCATGTATA TTTCTCAGCTGAACTAAATTATTATGCCCATTGCTAGCGTTTTAATTAACATGCAAGAGATGTGGGTTTGTACTAGCTCC AAATGATTTGTTTATATATATCAATAAATATGCTCGGTTAGACTTTGTGGTCAGATTAATTGACGAAGTCTACTCCATCC GTTTCATAAAAATTGTTTCTTACTGTGATAATAGTTGATACT
CDS sequence (LotjaGi5g1v0265400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCACAAAATCCACAACCCCATCATTTCCATGACTCCCTTCCATTCATGGCGAACAAGCTAGGCGGCGACGGCCT CATAGACGAGCTCTGCAACGGGTTCAACCTCTTGAAGGACTCTGAAAAAGGTGTCATCACTTTCGACAGCCTCAAGAGGA ATTCTGCTCTGCTGGGCCTGCAAGGTTTCAGCGATGAGGATCTTCGCTTGATGCTCCGGCAAGGTGATTTTGACGGCGAT GGCGCGCTTATCCAGTTGGAGTTCTGTGTTTTGATGTTTAGATTGAGCCCTGAACTCATGGAGGGGTCTCAGTTGTGGTT GGAGGAAGCCCTTCAGCAAGAACTTAGAGATGATGGTTGTTGA
Protein sequence (LotjaGi5g1v0265400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASQNPQPHHFHDSLPFMANKLGGDGLIDELCNGFNLLKDSEKGVITFDSLKRNSALLGLQGFSDEDLRLMLRQGDFDGD GALIQLEFCVLMFRLSPELMEGSQLWLEEALQQELRDDGC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 117 | 117 | 1.5E-62 | – | |
| PANTHER | 1 | 117 | 117 | 1.5E-62 | – | |
| SUPERFAMILY | 5 | 92 | 88 | 4.33E-10 | ||
| Gene3D | 9 | 119 | 111 | 8.0E-20 | – | |
| Pfam | 42 | 94 | 53 | 3.2E-16 | – | |
| ProSiteProfiles | 63 | 98 | 36 | 8.851 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi5g1v0265400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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