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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0268200 |
| Transcript ID | LotjaGi5g1v0268200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT1G68810.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9S7Y1|BH030_ARATH Transcription factor bHLH30; TrEMBL-Plants: tr|A0A1J7FMQ6|A0A1J7FMQ6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0268200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:58074307..58076951) extracted from Lotus japonicus Gifu genome v1.2.
AGAAGATCTAAAGGGTTGGACTTTTCGTTGGCCGCCCATCACCACAAGACCATAATCACATCACAATAGTAAGGTCAGTT CTACACTTTCCATTTTCATTTTTACTTCTTTTCATCAACACACATTGTCCCTCAAGTAGTGCCCTTTTCATTTTTATTCC TTGTGCAACAAGTGTATACTGAAACTTAATTCTCCAACCAAACTCTTTATTCTCTAGATCCTCCTTTTTTTTAATCATAT CAGACAAAAATAAAAAAATATACAGACGCATACAAAACAAAACCCAAACATTCTTATATAAAGCCTTGGAGTTTGGGTTT CTTTTCATCAACAACATATAAAACACGAGAAAAAAAAAATGATACAGGAAGATCAAGGACAGTGTTCTTCTCATCAAGTC ATCAACAACTTCCAAACCTATCAAGAACATCAGCTTCTCCTTCAGCAACAGATCATGTCTCAGCAAAACAGTGACATCTT TGGATTCAATCATCATCACATGTTCCCTGGTGGTGAAGTTCCATGGTCTATGCCTCAAGTTCAACCCTTCAACCAAGCTT CACCTTATGCAAGTTTTTTCAACAGATCAAGGGTTGTTCCTTCTTCTCTTCAGTTTACATATAATGATCATCATCATCAT CAGGTTCAACCTGGTTCATCATCATCAGCACCTTTTGGCCTTCAAGCTGAGATGGGAAAGATGAGTGCTCAAGAAATCAT GGAGGCTAAGGCTCTTGCAGCTTCCAAGAGTCACAGTGAAGCTGAAAGGAGACGCAGAGAGAGAATCAATAATCATCTTG CCAAGCTTCGTAGTTTGTTGCCCAGCACAACAAAAGTAAGTCAAATCAATTCTTCAAATTAATAAAAATATGTTTGGATT ACTTTATCTTCCGGTACTCGAATCAATCCTGAAACGCGTAAGTTACCTAGTGAGTGCAAATTTGAAAGTTCTTCTATAAT TGATTCTAAATGAAGTCATGATCAATTTTTTGGAGAGAAAATTCACTTAGTAGTTTCCAGATATCAAAACTGAATCTGAG AAAATAGAAATTGATGCAAACATGCATCTTCTTCCAAAAATTCATTTGGACTTGAGAGTTAATTAAAAAAGAATTTCTAA ACATGAATTATGAACTAAGTTAGTTCCTCACAAACCCCAAATATTCAAATAAAAGAAGTAAAAAAGATTCAAATTATGAA TTGATTGCTAGTAAGTAATCATTTCAACTGCAAGAACGAGCCTTTTGGCTGAAAATAGTTCAAGAGTGAGTATTTTCAAT TCAAATGAGCAAATAGTATGTTTTTCCAAGATTCTATAATCTGTTACTTTGGTCAAACAAAATCCAAACCTTTTGGCTGA AAATTAAAGAGTGATCGATCCCATTGTTTGCTTGCTTTTTTCAACACCCTTTTTGGCTTTTGTTATTAGTTCTTGTTTTT TTCACACATTGTGTTTGTCTTTTGGCTTTCCAGCTTCTCATTAGTAACTTTAATGATGTTTATAATGTGTTCTTTGGGGG CCAGTCTCTGTGGCAGTTCCAAGGAAGTGGCTAGAAAAAGCAATAAAAAGAGAAGAGAAAAGCATATTAGCGTTAATTAA TGTCGCTTGGTTGGTATGATAAAGAGGAAGCCAAGTAGCTGTTGAAAAGAATTCACTAGGATGCTAATATGCTTTTCTCT TCTCTTTTTATTGCTTTTTCTAGCCAACTAGTGGATAAACGAGTTAGATTTGTTAACTGCGTAAATTTAGAAGACTCATG ACTGTCAAAGAATTCATCAATTCCCAATTTTCAGGGCTTTAGTTGATTAAATAATAGTAGTAGTAATAATTCTATACAAT TCAGATAATCATTTCTCTTAATTTCGTGTATTAACTTTGTTGTTTTTTTGTTTTTGTTTTTATTTTTGGTTTTTGTAGAC AGACAAAGCATCATTGCTAGCAGAAGTGATTCAGCATGTGAAGGAGCTGAAGCGTCAAACTTCACTAATAGCAGAAACGA GTCCAGTTCCTACAGAAGCTGATGAGATAACAGTGGATGCAGCTGATGATGAAGACAATGGCAAGTTCGTGATCAAAGCC TCGCTTTGCTGCGAAGACAGGACAGATATTTTGCCTGAACTCATAAAGACCTTGAAAGCGTTGAGGTTAAGAACCCTAAA AGCTGACATCACAACGCTCGGCGGGCGCATGAAGAACGTGTTGTTCATCACTGGTGATGATAATAATGAGGATAGTTATT CAAGTAGAAGCTGCATAATTAGCTCAATACAAGAAGCGCTTAAAGCAGTGATTGAGAAGAGCGTTGGAGATGAATCTGCT GCTTCTGGAAATGTTAAGAGACAAAGGACCAATATAGTATGAATATCCTAGCTAACTAGCTACAACAAGAGTCTTTACAA ATTTTATCTAAGTAAAGGCCTATTACTATATATTTATATCTTTTGATTTGGATTATTTTAAATATTAGTGATATATTTTT GGGGGGTGCGGTTTTTTTTCTTTCTAAATCACGGTGTGCTAAAGAAATGTTGTTGTTTGTATTTGTGATGTATCTTCTCT ATCAACATCATCATGAAAGTAATGAGATAATGATAATAGCTAGGGTGGTTTGTCACATGGTTACTTGATGATGGGCACAG TTGAG
CDS sequence (LotjaGi5g1v0268200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCAGCAAAACAGTGACATCTTTGGATTCAATCATCATCACATGTTCCCTGGTGGTGAAGTTCCATGGTCTATGCC TCAAGTTCAACCCTTCAACCAAGCTTCACCTTATGCAAGTTTTTTCAACAGATCAAGGGTTGTTCCTTCTTCTCTTCAGT TTACATATAATGATCATCATCATCATCAGGTTCAACCTGGTTCATCATCATCAGCACCTTTTGGCCTTCAAGCTGAGATG GGAAAGATGAGTGCTCAAGAAATCATGGAGGCTAAGGCTCTTGCAGCTTCCAAGAGTCACAGTGAAGCTGAAAGGAGACG CAGAGAGAGAATCAATAATCATCTTGCCAAGCTTCGTAGTTTGTTGCCCAGCACAACAAAAACAGACAAAGCATCATTGC TAGCAGAAGTGATTCAGCATGTGAAGGAGCTGAAGCGTCAAACTTCACTAATAGCAGAAACGAGTCCAGTTCCTACAGAA GCTGATGAGATAACAGTGGATGCAGCTGATGATGAAGACAATGGCAAGTTCGTGATCAAAGCCTCGCTTTGCTGCGAAGA CAGGACAGATATTTTGCCTGAACTCATAAAGACCTTGAAAGCGTTGAGGTTAAGAACCCTAAAAGCTGACATCACAACGC TCGGCGGGCGCATGAAGAACGTGTTGTTCATCACTGGTGATGATAATAATGAGGATAGTTATTCAAGTAGAAGCTGCATA ATTAGCTCAATACAAGAAGCGCTTAAAGCAGTGATTGAGAAGAGCGTTGGAGATGAATCTGCTGCTTCTGGAAATGTTAA GAGACAAAGGACCAATATAGTATGA
Protein sequence (LotjaGi5g1v0268200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSQQNSDIFGFNHHHMFPGGEVPWSMPQVQPFNQASPYASFFNRSRVVPSSLQFTYNDHHHHQVQPGSSSSAPFGLQAEM GKMSAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTE ADEITVDAADDEDNGKFVIKASLCCEDRTDILPELIKTLKALRLRTLKADITTLGGRMKNVLFITGDDNNEDSYSSRSCI ISSIQEALKAVIEKSVGDESAASGNVKRQRTNIV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 32 | 272 | 241 | 5.0E-122 | – | |
| PANTHER | 32 | 272 | 241 | 5.0E-122 | – | |
| Gene3D | 89 | 153 | 65 | 3.5E-16 | ||
| ProSiteProfiles | 95 | 144 | 50 | 16.907 | ||
| Pfam | 98 | 145 | 48 | 1.1E-12 | ||
| SUPERFAMILY | 99 | 151 | 53 | 8.64E-15 | ||
| SMART | 101 | 150 | 50 | 6.3E-13 | ||
| CDD | 108 | 147 | 40 | 1.60005E-5 | ||
| CDD | 182 | 255 | 74 | 8.12778E-6 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi5g1v0268200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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