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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0274100 |
| Transcript ID | LotjaGi5g1v0274100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin response factor; TAIR: AT4G30080.1 auxin response factor 16; Swiss-Prot: sp|Q653H7|ARFR_ORYSJ Auxin response factor 18; TrEMBL-Plants: tr|A0A0S3SNU9|A0A0S3SNU9_PHAAN Auxin response factor; Found in the gene: LotjaGi5g1v0274100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:58771240..58775163) extracted from Lotus japonicus Gifu genome v1.2.
GTTTATATCTTCATATATGTGTGTCAAATTCACACTCGGTCGGCAGCTCAGGGAAGCTTAGACGTGTGAGACAGTGTGTG TGTGTGTGAGATCAAGAGAGAGAGTAGTTTGTGTCTCTTTATGTACTTCAAACTTGGAACTCAACTCAACTCAACTCATT CACACTCACCACTCTTCCTCTCTCTTCCTTCTTTCCTTCCACATCACTCCCTCTCCTTTTCCTCATCTACCAATCAACAC ATTCACTTCCTCTTCCTTCCTTGTACAACCATCACATTCTCATCTCACCCACCTTCTTCTCCTCCTAATTCCAACCCTTT TCCACTCCTGCAATTCTGTCCTTTCAGGGTGTTTTCCATTTCCACTGCCTGCCCATCATTCCCCTTCAAATCCTTTCTGT CCTTTCCCAAAATTCACTTTCTGGGCTTCCTCCAAATCCACTCATAGCTTCAACAACCACAAAAAGCAAGGATTTTTGTC TTTTTTTATTTTTTTCCACACTGAGATGTTTGTGGTGATGGATTCCATGGAGAGAACAACAGAAAGGTGTTTAGATTCTC AGCTATGGCATGCCTGTGCTGGTGCCACGGTTCAAATGCCACCTCTCAACACCAAAGTCTTCTACTTCCCTCAGGGACAC GCAGAGCATGCTCATGGTGGAGGCAAAATCAATTTTGGCCAACACAGAGTTCCACCTCTCATCCCTTGCAGGGTCTCTGC CATGAAATACATGGCAGACCCTGACACAGATGAGGTGTTTGTCAAAATGAGACTAACCCCTTTGAGAGAACATGAATTGG ATTTGGAAGAAAATGATTGTAGCAATTTCTTGGGAGGGAACAACAACAGTGAAGAAAAAGTGCCTAGTTCTTTTGCCAAG ACTTTGACTCAATCTGATGCTAACAATGGTGGAGGCTTTTCTGTTCCTCGTTATTGTGCTGAGACCATTTTTCCAAGGTT GGATTATTCAGCTGAGCCTCCTGTTCAGACCATTATTGCCAAGGACATGCATGGACAGTGCTGGAAGTTCAGGCATATCT ATAGAGGCACACCTAGGAGGCATCTTTTGACCACTGGTTGGAGCAATTTTGTCAACCACAAGAGGCTTGTTGCAGGGGAT TCCATTGTGTTTCTGAGAGCTGAAAATGGAGATCTTTGTGTTGGGATTAGGAGGGCTAAGAAGGGGATTGGTGGTGGCAC TGAGTTGTTTTCCTCTGGTTGGAACAACAACCAGGTAGCTCCTACTATGTTTGGTTCTGGTTTCTTGTGCAAGAGTGAGA ACAATAGGAAAAATGGGGATGAGTTTTTTATGGGAAGAGTTACAGGTGAATCTGTTGTTGAGGCTGTGAGTTCTGCTGTT AATGGAAGACCCTTTGAGGTTGTGTACTATCCAAGAGCTAGCACACCTGAGTTTTGTGTCAAGGCTTCTTCTGTGAAGGC TTCAATGCAAATTCAATGGTGTTCTGGGATGAGATTCAAAATGCCCTTTGAAACTGAGGATTCTTCCAGGATCAGCTGGT TCATGGGAACTATTTCTTCTGTTTCAGTTGCAGATCCCATTCGTTGGCCTGATTCTCCTTGGCGTCTTCTTCAGGTACAC TACACCATCATAGATTTTTTATTTTTTTTGCCTTCACCAATCACCATTAATGGTTTATTTTTCCTCTTATGGTAATATGC TGAGATCCTTTTTTCTCAACTCAAGTTCTTTGTGCTCATAGGTCAACTTTATTCTCTGCATACTACTGATTCTGACTTGT TGGTTAATAATAGTGAATTGCATCTTGAACTGTTGACTATTTCTTATAGTTCTTCTTGGTTCTTGCTCTTTTTTTACCCT TTCTGAAAAGTTTATGATGTACATTTCAATGCTTCAGAAAGATGGAACAGAGTTTACAGCTTGTCAGATTGAGATTATTT ATCTGATAGACTGATGCAAAGTTTTTGTTTACCTTCCTCATTTCTGTCCCCTTTCCTATTAAATAGTTACTGCATGATAT TGACTTCTTGTACCAGTTGTATATTTGTTAAGCAACAATGAAATTTAAGAGCTTTGATACATAGTGAAAAACTACTATGG ATCATAACAACTTTCCTTAGCTTTTAGGGCTGTTTACATTGATTTTGACTCTATGGTGATTTTTCCTTGTGCATTCAAAC ATGCACTATATCCTCTTATGAAAGTATTCAAAGAAAAAAATGGATTGATGTTTTTAGAATATAAAAATATTTAATAAGAG GATTTTATGATCATCAGCTAGAAGGATTTAAAATTGTTCTAAATTTAAAGGATATTAGGTTCTCTAAAGGGAACTTTTTA TGTTTTGGATCCTATTGAAGAACAGAATAACGGTTAATAGTATTAACTGTTGAACAGCAGAAAAGTAGCAGATCATTTCA AGTGTCTGTTCAATGCTGACATTTCTTCCTACTTTGTACCGAAGTTGCTTGAATTGGGTGCAGCATGTTTGGAAACGTTT TATGATTGATTCTGATGCCTAAGGCTCTGTTTGGATTTGTAGTGGAAATTTTGATCCAGATTTATGTCATACCGAATGAG TAGCTTTTGAGTTTAATAATTGATTGTGATGATACAGAAGCTAATACAAACATGCTATAAGATTAAATTCTTTCTTAATT TGTTTACCTGTTTCTATTTGGCTTGAGGTTTGGTTAATCTAGATTGCTCTAAATTTCTTCTTTGTGATGTCAATGTTTCA GGTAGTGTGGGATGAACCAGATTTGCTTCAAAATGTCAAGTCTGTGAACCCTTGGCTGGTTGAACTAGTCTCAAACATGC CCACCTTCAACCTCTCTCCATTCTCACCTCCAAGAAAGAAACAAAGGCTCATACAGGACCCATATTTTCACCTCATCAAC CAACTTCCAGTGCCATCATCACTCTCCAACAATCTTCTCAGTTACACTAACTCTCTGTGTAACATGAAAGATAATAATTA CAGCTCTGCAGGCATACAGGGAGCCAGGCATGTTCAATGTGGACCAACTCCATCATCTGATTTTCCCTTCAAAATCCTGC AACCAGATTTCTCAAGGTTTGACCATGAAACTCAACCTATTAGGCCACATTGTGGAAATGGAAACTCATACAAGAGCAGC ACTAAGACCAATGTTGACATTTCTTGCTTGTTGACTGTGGGAAATCATGGCCAGAGTTTTAAGGAATCCAATGAAGTTAA AGCACCACACATCTTGTTATTTGGAAAAATCATTCACACAGAGCAGAAGAGTTCAAACAGCTTGAACTCTTCTGCTAGCA CCAATGGGAACAGTTTATCTGAAGGGTCTAATTCCATGAAGACATCATCTAATGCTTCTCATGACTTGGGTTTTGCTTTG CATCAAAACAGCCCAATTGAAAACTCTTCTGATGGAGGGTCTCACTGGTACAAAGATCAACACAACTCTGATCTTGGTAC CGAAAACGTTACCTCACTATGCGTGGCTTTGTAGCAAATCTATTCCTTTCAGTGACTTCTTGAAGACATCATTGAGGCTA ACTGTTGTTAACAAGTTTCAGTAGCAGTAGTACTATTTCCTTTGTTGTGTAATTTCTGTTTTTCCTTTGGCATAATTCTA TTGAGGTGCAAGTTAGCAAAAATATTACTCATTTGGTTCTACAACATGTTTTAGAACTGAGTAATGGCTTTGATGAACTG AAGGGGTAATATTTTCCTTAACTTGCACTTAGCTGAAGTTTTATCTATTGGTAGATTTCTGGTGTAATGAGGGAGAATCC CTCTTCCATGGGATGATGTAACTCATGAATTTTTATTAAGGAATGTTGTCGCAGAGATATTCTGTTTCTTGCTTCATTAT TTAAGTTCCTTTAACTTTTTGATTTGAGGTTTTCTAAAAGGCATTTAATTTAATCCTCCCTCCTTCACCATATCCAAAGA TGAG
CDS sequence (LotjaGi5g1v0274100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTGTGGTGATGGATTCCATGGAGAGAACAACAGAAAGGTGTTTAGATTCTCAGCTATGGCATGCCTGTGCTGGTGC CACGGTTCAAATGCCACCTCTCAACACCAAAGTCTTCTACTTCCCTCAGGGACACGCAGAGCATGCTCATGGTGGAGGCA AAATCAATTTTGGCCAACACAGAGTTCCACCTCTCATCCCTTGCAGGGTCTCTGCCATGAAATACATGGCAGACCCTGAC ACAGATGAGGTGTTTGTCAAAATGAGACTAACCCCTTTGAGAGAACATGAATTGGATTTGGAAGAAAATGATTGTAGCAA TTTCTTGGGAGGGAACAACAACAGTGAAGAAAAAGTGCCTAGTTCTTTTGCCAAGACTTTGACTCAATCTGATGCTAACA ATGGTGGAGGCTTTTCTGTTCCTCGTTATTGTGCTGAGACCATTTTTCCAAGGTTGGATTATTCAGCTGAGCCTCCTGTT CAGACCATTATTGCCAAGGACATGCATGGACAGTGCTGGAAGTTCAGGCATATCTATAGAGGCACACCTAGGAGGCATCT TTTGACCACTGGTTGGAGCAATTTTGTCAACCACAAGAGGCTTGTTGCAGGGGATTCCATTGTGTTTCTGAGAGCTGAAA ATGGAGATCTTTGTGTTGGGATTAGGAGGGCTAAGAAGGGGATTGGTGGTGGCACTGAGTTGTTTTCCTCTGGTTGGAAC AACAACCAGGTAGCTCCTACTATGTTTGGTTCTGGTTTCTTGTGCAAGAGTGAGAACAATAGGAAAAATGGGGATGAGTT TTTTATGGGAAGAGTTACAGGTGAATCTGTTGTTGAGGCTGTGAGTTCTGCTGTTAATGGAAGACCCTTTGAGGTTGTGT ACTATCCAAGAGCTAGCACACCTGAGTTTTGTGTCAAGGCTTCTTCTGTGAAGGCTTCAATGCAAATTCAATGGTGTTCT GGGATGAGATTCAAAATGCCCTTTGAAACTGAGGATTCTTCCAGGATCAGCTGGTTCATGGGAACTATTTCTTCTGTTTC AGTTGCAGATCCCATTCGTTGGCCTGATTCTCCTTGGCGTCTTCTTCAGGTAGTGTGGGATGAACCAGATTTGCTTCAAA ATGTCAAGTCTGTGAACCCTTGGCTGGTTGAACTAGTCTCAAACATGCCCACCTTCAACCTCTCTCCATTCTCACCTCCA AGAAAGAAACAAAGGCTCATACAGGACCCATATTTTCACCTCATCAACCAACTTCCAGTGCCATCATCACTCTCCAACAA TCTTCTCAGTTACACTAACTCTCTGTGTAACATGAAAGATAATAATTACAGCTCTGCAGGCATACAGGGAGCCAGGCATG TTCAATGTGGACCAACTCCATCATCTGATTTTCCCTTCAAAATCCTGCAACCAGATTTCTCAAGGTTTGACCATGAAACT CAACCTATTAGGCCACATTGTGGAAATGGAAACTCATACAAGAGCAGCACTAAGACCAATGTTGACATTTCTTGCTTGTT GACTGTGGGAAATCATGGCCAGAGTTTTAAGGAATCCAATGAAGTTAAAGCACCACACATCTTGTTATTTGGAAAAATCA TTCACACAGAGCAGAAGAGTTCAAACAGCTTGAACTCTTCTGCTAGCACCAATGGGAACAGTTTATCTGAAGGGTCTAAT TCCATGAAGACATCATCTAATGCTTCTCATGACTTGGGTTTTGCTTTGCATCAAAACAGCCCAATTGAAAACTCTTCTGA TGGAGGGTCTCACTGGTACAAAGATCAACACAACTCTGATCTTGGTACCGAAAACGTTACCTCACTATGCGTGGCTTTGT AG
Protein sequence (LotjaGi5g1v0274100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFVVMDSMERTTERCLDSQLWHACAGATVQMPPLNTKVFYFPQGHAEHAHGGGKINFGQHRVPPLIPCRVSAMKYMADPD TDEVFVKMRLTPLREHELDLEENDCSNFLGGNNNSEEKVPSSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPV QTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNHKRLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGTELFSSGWN NNQVAPTMFGSGFLCKSENNRKNGDEFFMGRVTGESVVEAVSSAVNGRPFEVVYYPRASTPEFCVKASSVKASMQIQWCS GMRFKMPFETEDSSRISWFMGTISSVSVADPIRWPDSPWRLLQVVWDEPDLLQNVKSVNPWLVELVSNMPTFNLSPFSPP RKKQRLIQDPYFHLINQLPVPSSLSNNLLSYTNSLCNMKDNNYSSAGIQGARHVQCGPTPSSDFPFKILQPDFSRFDHET QPIRPHCGNGNSYKSSTKTNVDISCLLTVGNHGQSFKESNEVKAPHILLFGKIIHTEQKSSNSLNSSASTNGNSLSEGSN SMKTSSNASHDLGFALHQNSPIENSSDGGSHWYKDQHNSDLGTENVTSLCVAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 612 | 611 | 1.6E-299 | – | |
| PANTHER | 2 | 612 | 611 | 1.6E-299 | – | |
| Gene3D | 121 | 225 | 105 | 6.4E-40 | ||
| SUPERFAMILY | 122 | 224 | 103 | 2.49E-29 | ||
| CDD | 122 | 223 | 102 | 2.04713E-22 | ||
| SMART | 123 | 225 | 103 | 8.7E-20 | ||
| Pfam | 123 | 224 | 102 | 2.9E-21 | ||
| ProSiteProfiles | 123 | 225 | 103 | 13.14 | ||
| Pfam | 280 | 363 | 84 | 2.1E-32 | ||
| Gene3D | 317 | 391 | 75 | 8.9E-26 | – | |
| MobiDBLite | 540 | 598 | 59 | - | – | |
| MobiDBLite | 540 | 592 | 53 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Response to hormone | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. |
Expression pattern of LotjaGi5g1v0274100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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