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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0278800 |
| Transcript ID | LotjaGi5g1v0278800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger family protein; TAIR: AT1G34370.1 C2H2 and C2HC zinc fingers superfamily protein; Swiss-Prot: sp|Q9C8N5|STOP1_ARATH Protein SENSITIVE TO PROTON RHIZOTOXICITY 1; TrEMBL-Plants: tr|A0A151U650|A0A151U650_CAJCA Protein SENSITIVE TO PROTON RHIZOTOXICITY 1; Found in the gene: LotjaGi5g1v0278800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:59412300..59415052) extracted from Lotus japonicus Gifu genome v1.2.
TTCAGTAAAACTGAGTTAAGCATCTATCTCAGGTAACTTTTGATTGCTTATATAAGCATTCAGTTCAGTTCCTATGTTTT CTTTCTCATTCCATGTTTTTTTCTTTTTTTGTCCTCTCAGAAATGGAGTTTTCAGATTGTTAGAGCATTCATTCAGCTTT GCATCTGTGACTGTAAGTTCTTCCATCCCATAATCTAGTTTTTTTTTTAATATAGATTTCTGTTGGTACTTTTTAGGGTT TGTTCTGAATGCTTGCCTCTTTTCCCTGCACCTTGTCCCTTTTTTGATTTAATTTTTTATACTGATACCATAAATGGTGT GTTGAATCTTTTGATGAGTTTTCTTTGAGCTGGCTCTTCTTCATTTCCTCCTTTTCTTTGGTCAAAAATCTGAATTGGTG TTCAGTTGCAGTGCAGGCACTTCTGAATTTGATATGTTGGAGCTAAGAGTAGTTAATGATTGGAATGAAAATAAATAGGG TACTAGAATATGCAGATTCATATAGAATTAAATGGTGATGATGAGGTGAGAGTTTTGGTTGGTTCTGATTGAACAAAAAG AATTCATCTTTATTGGGGAAGGGGAAAATTTTGAATTTGGATCTGAAGATATCTGAAGTGAAGAATAATAGGGGCTTGGG AGTTGAAAGTACTTTGTAGGTATTGACTGAATTGAATCCTTAGATTTTACTACCTAACTGGCCAAATAGCCATCAGAAGT GGATTGATTTGCTAGAGAAACTTAGATTTCATGAATTTGATACCAATTTTCAACTTATGGTAGCTGATATTTCTTCTAGT GATCATCTATAAATTTTCCCACTTCATCATTTTCATTCAGATCATCTTGTTGGGTCTTTCAAGAACTATCGATCTAATAT GCTATATTCTTTTCTTCGGTTAGTTTTTCGTAAAATATTTGATGTACATCATGTGTTCCTTACACATGTGCCTTTGATTG ACAGGGATCTTGATTCCTAAGAAATGGATCCAAAAGGAAGCTTATGTGCTAACAACTGGGCAGGGTCCTCTTCTTCCTCA GATCCTCCTCCTTTCTATGGGGTCAGGACTGAAGCACCTTTCAAAGAATTTAACCAGTTCCCTCCAACTCACTCTGCACT TCCAGGTGAATCTAACAAGGTCCCTGATCAAGAAAGTTATCCGCCAAGGGACTCGTCACAAGCGAGTAAACTCCAAGATT GGGATCCAAGTGTGATGTTGAATAACCTTTCATTCCTGGAAGAAAAGATTCACCAGCTCCAGGATCTAGTGCATTTGATT GTCAACAAAAAATGCCAACCTTTTGCTCAGCCGCATGAGCTCGTGACTCAGGAACAGCAACTCGTCACAGCTGATCTTAC ATCAATTATTGTTCAGTTGATCTCTACAGCAGGTAGTCTTCTCCCATCTGTTCGGCACACCCTTACAAATACAAATCCAT TGGTCAGTCAGCTCAGCCAGCTTCGTGGGATGAACCTTCCCTTCGGACCAGGCTCAAATATTGGTAATCAGATGCAGCCA CAAAATAATAGTGGAAGTAAATTGTTTGATCAGTCCATTCAGAATGATCTACCTCATAACTGTGAAATGGAGCAAAACCA CAATGTGGAAGAACATGAACATAAAGATGAGGAAGATGTGGATGATGGAGAGAACCTTCCTCCTGGTTCCTACGAGATTT TGCAATTAGAGAAAGAAGAAATCCTTGCACCTCATACGCATTTCTGTACAATATGCGGGAAGGGGTTCAAGAGGGACGCG AATCTCCGAATGCACATGCGAGGCCACGGTGATGAGTATAAAACACCAGCAGCTCTTGCAAAACCACATAAAGAAACCGG GTCTGAACCAAAGCTTATCAAGAGGTATTCCTGTCCCTACACCGGCTGCAAGCGTAACAAGGAACATAAGAAATTTCAGC CTCTGAAGACTATTTTATGTGTGAAAAACCACTACAAAAGAACACACTGTGATAAGAGTTACATTTGCAGCAGATGCCAC ACGAAGAAGTTTTCGGTCATCGCAGATCTCAAAACTCATGAGAAACACTGTGGCAGAGATAAGTGGCTGTGTTCATGTGG AACAACATTTTCGAGGAAAGACAAGCTTTTTGGACACATTGCCCTTTTCCAAGGCCATACACCAGCAATTCCTATGGATG ACGCCAAAGGAATCGGCGAGCAGCGTGATCACTGTGAAACCAAAGAAAACAGCAGTAGGGTAGGAAGCATGAACTTCTGT TTTGGATCAAATCCTTCAAGTGATCAAAATGGAGTTCAAAACATTATGGATGTCAAAGGAGATATTGATGATCCTATCAG TTATTTCTCATCCCTGAACTTTGAAGGCTGTAACTTTGGTGGGTTTAATGAATTCTCACAGCCTCCATTTGAAGATTCCG AAGGTTCTTTCTCTTTCCTCATGTCCGGATCATTTAATTATGCTCCAAAGTCTGGGGGTGAACCATGTTCTGACAATCTG TAGCGACAGTTTATGACAATGTTACTCTTCTACATTATATCTATGTTTTATTTATTATGCTGTTAAGTAATAAACCTTCT GTTTCTCTTAAGTTTGTAATTGTAAAGCCAGGTAATATCATATGTACTCACCATTTCTTAATATAGAAAAATTAATTCTC TTGAAGCTGTTCTTTAATCAAACAGAGGTTCTGTTTATAGGATCTTCACTGTGAAAAACATTTGCTTTACAGATGCAGCA AATCAACCAATAAGTTCTTTAATATCAAAATAA
CDS sequence (LotjaGi5g1v0278800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCAAAAGGAAGCTTATGTGCTAACAACTGGGCAGGGTCCTCTTCTTCCTCAGATCCTCCTCCTTTCTATGGGGT CAGGACTGAAGCACCTTTCAAAGAATTTAACCAGTTCCCTCCAACTCACTCTGCACTTCCAGGTGAATCTAACAAGGTCC CTGATCAAGAAAGTTATCCGCCAAGGGACTCGTCACAAGCGAGTAAACTCCAAGATTGGGATCCAAGTGTGATGTTGAAT AACCTTTCATTCCTGGAAGAAAAGATTCACCAGCTCCAGGATCTAGTGCATTTGATTGTCAACAAAAAATGCCAACCTTT TGCTCAGCCGCATGAGCTCGTGACTCAGGAACAGCAACTCGTCACAGCTGATCTTACATCAATTATTGTTCAGTTGATCT CTACAGCAGGTAGTCTTCTCCCATCTGTTCGGCACACCCTTACAAATACAAATCCATTGGTCAGTCAGCTCAGCCAGCTT CGTGGGATGAACCTTCCCTTCGGACCAGGCTCAAATATTGGTAATCAGATGCAGCCACAAAATAATAGTGGAAGTAAATT GTTTGATCAGTCCATTCAGAATGATCTACCTCATAACTGTGAAATGGAGCAAAACCACAATGTGGAAGAACATGAACATA AAGATGAGGAAGATGTGGATGATGGAGAGAACCTTCCTCCTGGTTCCTACGAGATTTTGCAATTAGAGAAAGAAGAAATC CTTGCACCTCATACGCATTTCTGTACAATATGCGGGAAGGGGTTCAAGAGGGACGCGAATCTCCGAATGCACATGCGAGG CCACGGTGATGAGTATAAAACACCAGCAGCTCTTGCAAAACCACATAAAGAAACCGGGTCTGAACCAAAGCTTATCAAGA GGTATTCCTGTCCCTACACCGGCTGCAAGCGTAACAAGGAACATAAGAAATTTCAGCCTCTGAAGACTATTTTATGTGTG AAAAACCACTACAAAAGAACACACTGTGATAAGAGTTACATTTGCAGCAGATGCCACACGAAGAAGTTTTCGGTCATCGC AGATCTCAAAACTCATGAGAAACACTGTGGCAGAGATAAGTGGCTGTGTTCATGTGGAACAACATTTTCGAGGAAAGACA AGCTTTTTGGACACATTGCCCTTTTCCAAGGCCATACACCAGCAATTCCTATGGATGACGCCAAAGGAATCGGCGAGCAG CGTGATCACTGTGAAACCAAAGAAAACAGCAGTAGGGTAGGAAGCATGAACTTCTGTTTTGGATCAAATCCTTCAAGTGA TCAAAATGGAGTTCAAAACATTATGGATGTCAAAGGAGATATTGATGATCCTATCAGTTATTTCTCATCCCTGAACTTTG AAGGCTGTAACTTTGGTGGGTTTAATGAATTCTCACAGCCTCCATTTGAAGATTCCGAAGGTTCTTTCTCTTTCCTCATG TCCGGATCATTTAATTATGCTCCAAAGTCTGGGGGTGAACCATGTTCTGACAATCTGTAG
Protein sequence (LotjaGi5g1v0278800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPKGSLCANNWAGSSSSSDPPPFYGVRTEAPFKEFNQFPPTHSALPGESNKVPDQESYPPRDSSQASKLQDWDPSVMLN NLSFLEEKIHQLQDLVHLIVNKKCQPFAQPHELVTQEQQLVTADLTSIIVQLISTAGSLLPSVRHTLTNTNPLVSQLSQL RGMNLPFGPGSNIGNQMQPQNNSGSKLFDQSIQNDLPHNCEMEQNHNVEEHEHKDEEDVDDGENLPPGSYEILQLEKEEI LAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYTGCKRNKEHKKFQPLKTILCV KNHYKRTHCDKSYICSRCHTKKFSVIADLKTHEKHCGRDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPMDDAKGIGEQ RDHCETKENSSRVGSMNFCFGSNPSSDQNGVQNIMDVKGDIDDPISYFSSLNFEGCNFGGFNEFSQPPFEDSEGSFSFLM SGSFNYAPKSGGEPCSDNL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 72 | 72 | - | – | |
| MobiDBLite | 9 | 23 | 15 | - | – | |
| MobiDBLite | 43 | 72 | 30 | - | – | |
| PANTHER | 48 | 487 | 440 | 1.9E-221 | – | |
| PANTHER | 48 | 487 | 440 | 1.9E-221 | – | |
| Gene3D | 231 | 299 | 69 | 6.9E-6 | – | |
| SUPERFAMILY | 244 | 271 | 28 | 2.14E-5 | ||
| SMART | 246 | 268 | 23 | 0.0026 | ||
| ProSiteProfiles | 246 | 273 | 28 | 12.03 | ||
| ProSitePatterns | 248 | 268 | 21 | - | ||
| SMART | 295 | 328 | 34 | 60.0 | ||
| SMART | 333 | 355 | 23 | 39.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0278800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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