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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0280100 |
| Transcript ID | LotjaGi5g1v0280100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SNARE associated Golgi protein family; TAIR: AT4G09580.1 SNARE associated Golgi protein family; Swiss-Prot: sp|Q8L586|Y4958_ARATH Uncharacterized membrane protein At4g09580; TrEMBL-Plants: tr|A0A151U635|A0A151U635_CAJCA Putative membrane protein family; Found in the gene: LotjaGi5g1v0280100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:59531624..59535396) extracted from Lotus japonicus Gifu genome v1.2.
TCGGAATTTTTTTTTTGTTATTTTTTTTAATTTTGATTGTAACACTTAACTTTTTAAATATAAGTTAATTCAAAACTTGT ATACTTACTTCTTCCATTCCAACTTCCAAGTTCAAAAAGCTCCTTCCCCATCTCTCTCTCTCAGACAACAAAAAGAAAAC TGCTTTGGAGTTCAATTTATCAGAAGGATCCACCATTTCTCACTTTCTCTCTCTTCCATCCCCAAATCTTAGGGTTTCCA CCAAATCATACGAATTAGGAATAAAAATCTCAACTTGTTGAATATTTTCACCCAATTATCACACTCCGATCCACGATGGG ATCATCGCGGTGACTGGATTAGATCCCACCCGCCGTGCCGACGAAGATGGCGGCGCCGAGGAACGTGACGGTGTTGAGGG ATGAAGAGAACGGGGAAGCAGCGCTGGAGGACGATTCGCCCTCCGCTAAGAAGCCCAAATTGGAGAGGCTCCCGTTCAAC ACGTGGGAATTTGCCGCCGTCGTCGCCGTCTTCTTTGTCTTCGCCACCGGCATCTTCTGCATTTACCTCACCATGCCCGC CACCGCTTCCGCCCACCTCAAATTGCCCCGTACCCTCTCCGATCTTCGCATACTCAAGTACCCTCCATTTCCCTTCTTAG GTTTTCCTTTCAGTAATCATCAAAATCCTTTTTTTCAAAAAAAAATGATTAGGGTTGTTAATGGCGGGTAGCGTAGCAGC AAGCCCAAAAAACGTTATTTCGAGCGCTATATCAGCAAATAGCGGGCAATAGTGGGAAATAGCGGTGAATAGTGGAGTAG CGATGAAGCCCCGGGGTGCTACACTATAGCGCTATAGCGTGCTATTAACAAGCTTATGTGATGTGACTCTTTTGTTCCTA GAGTTTATTTATTTATTTATTTTGTTCTTATAAAATATTTTGAGTTCTTAAGTGGATTTGAGTTGTAAATTTTCAATCAA TGTGCATTGTGCAGTGTAGTTACTTTTTTTTTTCCAATTTAGTTTTTATATTAGTGACAATGAAAATCTATGCTTTGTGT TTAATGTGTGTAGTTACCATGTTTTTGTTTGTTTGTTTGTTTTGCAGAGAACATCTTTCAGCATATGCTAATAATCATCC TGCACAGTTCATTCTTGGTTACTGCTCTATCTACATCTTTATGCAGACTTTTATGATTCCTGGAACAATCTTCATGTCTT TGTTGGCTGGTGCTCTTTTTGGAGTTGTTCGAGGGATAATGTTGGTTGTTTTCAATGCCACTGCTGGAGCCTCTTCATGC TTCTTATTGTCCAAGTTGATTGGAAGGCCTTTAGTTTCTTGGTTGTGGCCGGAAAGGTTAAGGTTTTTCCAAGCAGAGGT TTGTCTTTGTGTTGTTTATCTGGAAATTATCTAGGTAGTAATGTTATGGCATCAACTGTGTTAAGCGTTGATCTGAATTA CTTTTCTTTGGGTGGTTAAATTAGATCGCAAAGCGTAGGGATAAGCTGCTGAATTACATGCTTTTTCTGCGGGTGACCCC AACATTGCCAAATCTTTTCATCAATTTGGCATCTCCAATTGTTGACGTACCATTTCATATCTTCTTTTTGGCAACATTGG TCGGTCTTATTCCAGCTTCGTATATTACTGTCCGAGTAAGCTTCTTTGTGGCTATCTTACTGTTATTTACAATAGATCAC TGTTTCCCGTTTTCTCTGAACTTTGATATTATGTTAATCCAAGTGTTCATATTTTGTGCTATAGTTATTTTGTGTTTTCA GCTCCATTTAGTTAGTCCCCCTGTTGTATGTATGCCTTAATTATGTTTTACTATTGACTTCCAAATTTGGCATTTTTAAC TTTTGAAGTTTAAGATAGTAACTTCTTCTTACTAAAAGAGAAACAAAGAAGAAAAGAGGGATGGAGGGTCTTTGTGAATG TTTCTTACAACATTTATTGGATGATCATCAACTTAAGTTGAGCAACATTGATCTTCAAATGACTAAGGAATTAACATATT TTCCTAATTCATAAGCTTTGCAAATGACAATTTAGCAAATGTAGCAGTAGAAAATATTAACAGGGAAATGTTGATTTCTC CTGATATTCCAATTTAAGCAAGAAAAAAAAACTAATTCAAAGGCACGATAAATGATATATTTACAAAGAATATATGCTAG AAACAGTTCAACACTTCAACATTTGTATGAAGGAGGTAATTTTTGTTCAAGTATGCAAATATTATATTTGAGATTTGAGA AGACATAGATGATACATATATATTTACTTACCGAAGAAGTAGAGTAAAACAAAATTAAACAAGTATTGTGAAGGCTATGT TTGGAGTGATAAGAAGGGGTGGAATGGAATGAATGATGATAGGTTCCATTGTTTGTTTAAAATGGGATGGAATGAAATGG AAATGGAATGCATTCCACTTCATTCCATTGCATCCCACTCTATTCCATTCTGTCTCATTCCATTGCAGTCTATTCTATTT CATTCCATTGCATTGCATTCTTTGCCATTCCATTCTGTCATAGAATCTAAGTTCTCAGGGAGAATATGGGGTTGTACTTT AGCAAACAATTTTCAGGGAATCATTGCAGTTTTGTTCTTGAAGGAAATTGGGGATTTTAAATCACAGCGGTAATGTTCAC AATGAGAGGGCACATCATTTTGGATGAATATGTTAGGGGAAGTATTGCACTCTTGATCATGAAGAAGTACTAAGTTGGTT TAGGATAACTCATGTAAATTTTGTATAGTGTAGTTTTTATATTAGAGAACTTCACAATCCACTTTTTCACGTTGGCTTAG TATGTGTTTTGTGTGACTCCTTTGCTTTCTCTGATTTGGCTTGATTGGGTGGTGAAGTGATGAGAAAGGTTCCATTGTTT ATTGCTCATATTTTGTTTCTCTTACCATTTGAACTGGATTAATTTTGATCATATATTAAAATGGTTTTCACGTTGTTTTC CTTGTATTATAATGTTAGATTTTAATCATCATGGATTTTCATTCTCTTATAATTCCCAACTCATGGATGAAAATGCTTTG TATCTTCTATTCTGGTTTGTTCAAATTTTTGTGGTCGTTGTTCTTGCGGCGCGTCTTTTATTCTTCTCATGACGTCTCCA TGGTTTGTTTAACCAGGCTGGCCTTGCTCTTGGGGATCTAAAGTCAGTTAAGGATCTATATGATTTTAAGACATTATCAG TACTTTTCCTCATTGGCTGTGTGGCCATAGTTCCAACACTTTTGAAGAGGAAGCGAGTTTATGAATGAAGTTGTGTGCTG GCGCAGCTTTGCTCATTTGTCAAAGGCAAGTCATGTGATCATTAAATTAACTTGTGAAGACAGTGGATCATATTGGACAA TGGTTAGCCAAGATATTAGAAAAGGATTTATTGTTACTAAATTAAAACATTGGTATATGCTCCGTATTATTTTCTGTTGT GGAGCTTTTTCTTTTCACTTTTCTTTTTGATCTTGTGGAGAGAGTGAGGGTAGATTTAGCTCAGTGATGATCAATTATGC AGCTACGGCTCACAGGCTTTGGTGGAGCACTTAAATTACGTATAATGTAACAATGATGACTTCAGGAGCTATGTTGTGAC TGAAGTGTCTTACACCAAATACGAACAAACGTTTACATTGTACTATTGCTTCTTTATTCATTATTTATAGTAGAGAAATT TAACTATTACTCTTCCTGTCATTGGATTGAACTTTTATACTGTTCATGGGGTGGAGTGTTGATGCTCAATCTCATAACTC AGTGAATTACTGC
CDS sequence (LotjaGi5g1v0280100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCGCCGAGGAACGTGACGGTGTTGAGGGATGAAGAGAACGGGGAAGCAGCGCTGGAGGACGATTCGCCCTCCGC TAAGAAGCCCAAATTGGAGAGGCTCCCGTTCAACACGTGGGAATTTGCCGCCGTCGTCGCCGTCTTCTTTGTCTTCGCCA CCGGCATCTTCTGCATTTACCTCACCATGCCCGCCACCGCTTCCGCCCACCTCAAATTGCCCCGTACCCTCTCCGATCTT CGCATACTCAAAGAACATCTTTCAGCATATGCTAATAATCATCCTGCACAGTTCATTCTTGGTTACTGCTCTATCTACAT CTTTATGCAGACTTTTATGATTCCTGGAACAATCTTCATGTCTTTGTTGGCTGGTGCTCTTTTTGGAGTTGTTCGAGGGA TAATGTTGGTTGTTTTCAATGCCACTGCTGGAGCCTCTTCATGCTTCTTATTGTCCAAGTTGATTGGAAGGCCTTTAGTT TCTTGGTTGTGGCCGGAAAGGTTAAGGTTTTTCCAAGCAGAGATCGCAAAGCGTAGGGATAAGCTGCTGAATTACATGCT TTTTCTGCGGGTGACCCCAACATTGCCAAATCTTTTCATCAATTTGGCATCTCCAATTGTTGACGTACCATTTCATATCT TCTTTTTGGCAACATTGGTCGGTCTTATTCCAGCTTCGTATATTACTGTCCGAGCTGGCCTTGCTCTTGGGGATCTAAAG TCAGTTAAGGATCTATATGATTTTAAGACATTATCAGTACTTTTCCTCATTGGCTGTGTGGCCATAGTTCCAACACTTTT GAAGAGGAAGCGAGTTTATGAATGA
Protein sequence (LotjaGi5g1v0280100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAPRNVTVLRDEENGEAALEDDSPSAKKPKLERLPFNTWEFAAVVAVFFVFATGIFCIYLTMPATASAHLKLPRTLSDL RILKEHLSAYANNHPAQFILGYCSIYIFMQTFMIPGTIFMSLLAGALFGVVRGIMLVVFNATAGASSCFLLSKLIGRPLV SWLWPERLRFFQAEIAKRRDKLLNYMLFLRVTPTLPNLFINLASPIVDVPFHIFFLATLVGLIPASYITVRAGLALGDLK SVKDLYDFKTLSVLFLIGCVAIVPTLLKRKRVYE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 41 | 41 | - | – | |
| PANTHER | 1 | 274 | 274 | 5.0E-154 | – | |
| PANTHER | 1 | 274 | 274 | 5.0E-154 | – | |
| TMHMM | 39 | 61 | 23 | - | – | |
| Phobius | 42 | 63 | 22 | - | – | |
| Phobius | 64 | 104 | 41 | - | – | |
| TMHMM | 98 | 120 | 23 | - | – | |
| Phobius | 105 | 128 | 24 | - | – | |
| Pfam | 114 | 233 | 120 | 1.1E-18 | ||
| Phobius | 129 | 133 | 5 | - | – | |
| TMHMM | 130 | 152 | 23 | - | – | |
| Phobius | 134 | 152 | 19 | - | – | |
| Phobius | 153 | 186 | 34 | - | – | |
| Phobius | 187 | 207 | 21 | - | – | |
| Phobius | 208 | 212 | 5 | - | – | |
| Phobius | 213 | 236 | 24 | - | – | |
| TMHMM | 213 | 235 | 23 | - | – | |
| Phobius | 237 | 247 | 11 | - | – | |
| Phobius | 248 | 267 | 20 | - | – | |
| TMHMM | 250 | 267 | 18 | - | – | |
| Phobius | 268 | 274 | 7 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0280100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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