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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0281400 |
| Transcript ID | LotjaGi5g1v0281400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sucrose transporter; TAIR: AT1G71880.1 sucrose-proton symporter 1; Swiss-Prot: sp|Q39232|SUC1_ARATH Sucrose transport protein SUC1; TrEMBL-Plants: tr|I1LD90|I1LD90_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0281400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:59739540..59742703) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTCTCTACCTAATAGATATGGATATTGCTAGTTAAAATGTAAATATAGTTGTTGAGTTTAGTTTTGCTTAACCATAG GTTAGTTAAGAGTTGGTTAGGCTTTGGGTTAACTAACTAAATAGGTTGGTTAACTCAACTTGAGTTCTCCTTCACTGTAT ATAGCTGAGAGCAAAGCTTGTAGATTCTCATTGAATCAGTTGGTATCATTTCATTCAATACAATCAAGTTTTCAGTTTCG TTTACTCTCAACTGTTTCTTTCTTCTTCTTCCTTCCTTCCTTCCGCTTTCAAGATTTGTTACTACCAGTGGCGGACCTTG TCTTTTTATCAAATGGATACATAAGCAAGTGAAATTAACTTTGGGTTTTAAATGAGCTACCACTTCTCTACGACTCTCCC TTACTCAGCCACTCTATAAACCGACCACTCCACCACCAACATCTAACACAGCACAAAACTCAAACGCAAACACAACAGCC TCGCCCTCAAACCTTCCTCTACCTCAAACCTTCCTCTCTCGACATGGAAGCACCACAACCTCCACCGGCGCCAACTCAGC CAAGCCCTCCCCGCAAGATGGCCGCCGTTGCCTCCATTGCTGCGGGGGTCCAATTTGGCTGGGCCTTGCAGCTCTCCCTC CTCACTCCCTATGTCCAGCTACTGGGCATCCCTCACAAATGGGCCGCTTACATCTGGCTCTGCGGCCCGATCTCTGGCCT CCTGGTGCAGCCCATTGTCGGTTATCACAGTGACCGCAGCACTTCACGCTTTGGCCGCCGCCGGCCATTCATCACCGCCG GAGCACTCGCCATCGTCATCGCTGCCTTCCTCATCGGCTACTCTGCCGACATCGGCCACGCCTTGGGCGACCCCCTCACC GGAACCCGTCCCCGTGCCATAGCCGTTTTCGTGGTCGGATTCTGGATATTCGACGTAGCGAATAACGTACTCCAAGGTCC TCTCCGGGCCTTCCTCAGCGACCTCGCCGCCGGCGACCAGCGCAAAACACGAACGGCAAACTCCCTCTTTTCGTTCTTTA TGGCAATTGGCAATGTCGGCGGCGTACGCCGGGACCAACGGCCACCTCTACCGCCAGTTTCTCCCATTCACGAAAACAGT CGCCTGTGACGAATCATGCGCGAATCTTAAATGTTGCTTCATCATTTCGGTTACGCTTCTGTTGACTCTTGCCACCGCCG CCATGTTATACGTGAAGGAGGAAGCGCAAACGCAAACGGTAGCTGGTGATGATGGTGGGATGCGTTGCTTTGGCGGGTTG TTCAGTGCGTTTCTCACACTGAACAAACCGATGTGGATTCTGCTGTTGGTGACTTCTTTGAATTGGCTGGCATGGTTCCC ATTTTTCCAATTCGACACCGATTTTGTGGGGAGAGAGGTGTTCGGTGGAGAAAAAGTTGACCAGAAATTTTTTTACAAGG GGGTGCAATGGGGAACATTGGGTCTGATGCTTAACTCTGTGGTTCTCGGTGCGACATCCTTGGGGATGGAACGGCTGTCT CGGGGAGTTGGCGGAGTGAAGAGGTTGTGGGGGATCGCGAACTTACTGCTTGCAGTGGGTTTGGGAATGACGGTTTTGGT GGCGAAGCTGGCGAAGGAGTCGCGTCATTACGGCGTCGGTGGCCAGCTGCTCCAGCCGGACGGTGGCATCAAAGCCGGGA CGCTAATTCTCTTTACCATCCTCGGCATCCCACTGGCGGTAAACAATTTATTGCACTTTCAAATATATTTCGGGCAGTCT TTGTTAATTCATTTTTTTTTATAGGCAATGTGTCTTTGTTAGTTCATGAAATATAAAAAAGATAAACTAAAATGTTTCAA AAGTAAATTTATTGGTAGAAATTAAAATTCCTTAATAATAAATATATTTTTTGAAACAAAGTATAAATATATTAAGTTAT TTTGATATCTCGTGCTGTTTGGTGCTGTCATTTTGCTCCCTTTAGTTTGAATAATTACCACGGGGTATGATATATGTTCT CTGCCCTGTGTTAAAAATTTTCTGTCTTGGTTGTAGTTTGTTTTTTTATCTTATTTAGTATGGCATCAGTAGATGACTGT TGTTTTTCCTTTCTATGTAAGTTCTGTTTTGAATTTTGATAGAGGGGGGCTTTGTATCCTCTTGCTTTTATCTGTTCATG GATATAGTAAATTTAGAAATTTAGAAATATAGTACTGAAAAATTAACACCTTTTTTTTTTTGGTTTGTATGTTAAGGTTA CTTTCAGTATACCGTTTGCTCTAGCATCTATATTCTCCAGCACCACTGGGGCAGGCCAAGGTATAATGCATAACCTCATT TTTTTTTCAAATATTTCAGGGTCATCTTAAACAATTAATAATGCATAACCTCATATTTTTTGTTCAAATGTTTTAGGGTT ATCTCTAGGAGTTCTAAATATTTCCATTGCCACAGGTTAGAATTAACTTCACTTCATTATAAATTTTCCAAGTAATAATT AACTTCATTAGTGTGGATTATTATTAGCTAATTATGACTATATGTGCATAGATGGTGGTGTCTGATCTTGTCATTGGAAA TTGGAATGAGCAGTTTGGAGGTGGCAATTTGCCGGCTTTTGTGGCAGGTGCTGTGGCGGCTGCAGCCAGTGGGATTTTAT CATTGGTCCTACTGCCATCTCCACCGCCAGATTCGGTCAACGCTGCCGCCGGAGGAGGACATTAAGCGGGGGGGCGGGGG GGGAGCTTTTATTAGTGGCTGTTGTTTTAGATATACTTGCAACTCTGTAGATGAAAGATATTCTTCCTTATCTTGTCTTT TCTTAAGTTCATCTTAAACTAGTTTTGCATCCATTTGTTTCGCAACCCAAGGAATCGGATTCACATATTTTCTTTCTAGA AGACAACCAATAATTGTACTAGATATTTGCGCGCATTTTCCTGCAACTATACATTATAATTAACCTCATTTATAAAAACT ACTGTGAAGAAAAATAAGGATATACTGATATAGTTTTATCTTAATTATGATAAATAATAGGTAAGTTTTTACTGGTATAT CTATGAAAGACCATGAACTTACAAGTACTTTCTTTTATAAATATTAGAACTCAAATTATCAGTGATAAGTATGTGCATGC ATGCATGATTTCTTTATTTTTGAATGTATTCGAGAGGTGCTCCC
CDS sequence (LotjaGi5g1v0281400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGGCGGCGTACGCCGGGACCAACGGCCACCTCTACCGCCAGTTTCTCCCATTCACGAAAACAGTCGCCTGTGACGA ATCATGCGCGAATCTTAAATGTTGCTTCATCATTTCGGTTACGCTTCTGTTGACTCTTGCCACCGCCGCCATGTTATACG TGAAGGAGGAAGCGCAAACGCAAACGGTAGCTGGTGATGATGGTGGGATGCGTTGCTTTGGCGGGTTGTTCAGTGCGTTT CTCACACTGAACAAACCGATGTGGATTCTGCTGTTGGTGACTTCTTTGAATTGGCTGGCATGGTTCCCATTTTTCCAATT CGACACCGATTTTGTGGGGAGAGAGGTGTTCGGTGGAGAAAAAGTTGACCAGAAATTTTTTTACAAGGGGGTGCAATGGG GAACATTGGGTCTGATGCTTAACTCTGTGGTTCTCGGTGCGACATCCTTGGGGATGGAACGGCTGTCTCGGGGAGTTGGC GGAGTGAAGAGGTTGTGGGGGATCGCGAACTTACTGCTTGCAGTGGGTTTGGGAATGACGGTTTTGGTGGCGAAGCTGGC GAAGGAGTCGCGTCATTACGGCGTCGGTGGCCAGCTGCTCCAGCCGGACGGTGGCATCAAAGCCGGGACGCTAATTCTCT TTACCATCCTCGGCATCCCACTGGCGGTTACTTTCAGTATACCGTTTGCTCTAGCATCTATATTCTCCAGCACCACTGGG GCAGGCCAAGGGTTATCTCTAGGAGTTCTAAATATTTCCATTGCCACAGATGGTGGTGTCTGA
Protein sequence (LotjaGi5g1v0281400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSAAYAGTNGHLYRQFLPFTKTVACDESCANLKCCFIISVTLLLTLATAAMLYVKEEAQTQTVAGDDGGMRCFGGLFSAF LTLNKPMWILLLVTSLNWLAWFPFFQFDTDFVGREVFGGEKVDQKFFYKGVQWGTLGLMLNSVVLGATSLGMERLSRGVG GVKRLWGIANLLLAVGLGMTVLVAKLAKESRHYGVGGQLLQPDGGIKAGTLILFTILGIPLAVTFSIPFALASIFSSTTG AGQGLSLGVLNISIATDGGV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 33 | 33 | - | – | |
| PANTHER | 6 | 257 | 252 | 7.4E-95 | – | |
| PANTHER | 6 | 257 | 252 | 7.4E-95 | – | |
| CDD | 16 | 254 | 239 | 2.00548E-36 | – | |
| Phobius | 34 | 54 | 21 | - | – | |
| TMHMM | 35 | 54 | 20 | - | – | |
| SUPERFAMILY | 35 | 249 | 215 | 1.15E-5 | ||
| Phobius | 55 | 86 | 32 | - | – | |
| TMHMM | 80 | 102 | 23 | - | – | |
| Phobius | 87 | 105 | 19 | - | – | |
| Phobius | 106 | 125 | 20 | - | – | |
| Phobius | 126 | 145 | 20 | - | – | |
| TMHMM | 130 | 152 | 23 | - | – | |
| Phobius | 146 | 164 | 19 | - | – | |
| TMHMM | 165 | 187 | 23 | - | – | |
| Phobius | 165 | 187 | 23 | - | – | |
| Phobius | 188 | 207 | 20 | - | – | |
| Phobius | 208 | 235 | 28 | - | – | |
| TMHMM | 211 | 233 | 23 | - | – | |
| Phobius | 236 | 260 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0281400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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