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LotjaGi5g1v0282600.1

Overview

Field Value
Gene ID LotjaGi5g1v0282600
Transcript ID LotjaGi5g1v0282600.1
Lotus japonicus genome version Gifu v1.2
Description Polynucleotidyl transferase, ribonuclease H-like superfamily protein; TAIR: AT5G42905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|I3S1B3|I3S1B3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0282600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:59872837..59874541) extracted from Lotus japonicus Gifu genome v1.2.

TCTCATTTTATTTCACATTCATTCTCGATTTATTTATTTTTTAGTTATATCATTCATCTCATCTATTTTTTCTTTCTTAT TTTTTTCCCCTCATTTCAACTAATAAGAAAGTGTCAATCAAATATAATTCTAAGAAAGAAAAGAGAGAAAATGGAATAGA AAATAGGTGTGAAAAGGAGAAAGATAACAAATCGCATCTTTGCCAATAAAAAAGTTTAACATATTAATGATCAGTGCAAT GTGAAGAGGAACTAGCAGGAAGGAACCTGTGTTTACAGTTTAGAGAGAAAATGAGTGAAAGAGGTGAAGGAGGAGGGTGG GGGTCTACGTTTCTGACAGTAGCAAGTGCAGCCGCCGCAGCGGCCACCGTAGCTCGCGGTTTATATGCTCTCCTCAAACA ATACGAGCATGAGCCTGAGCCTAAGGCAGCTCATAACAAGGAGAAGGAGGTGTTAAAGGTGTGGACTAAACCGAAGATGG GTTGGATAAAACTGAACGTGGACGGTTCCCTTCAGTCAGAGTCAGCAGGTTGTGGTGGAGTTCTGAGGGACTCATCTGGA AAATGGATCAGTGGTTTCGCTAAAAAGTTGGCTCATCCCGGTGGTGGACACTGTCCTCACAAACCAGAGGAGGAGGCCCT TTGCAGAGGGTTACAGTGGGCATGGGAGAGAGGCGAGAATAGAGTGGAGGTGGAGTCGGATCGTCAGGGGCTTGTTGATT CTGTGAAAAGTGGGAGCACAACCAGTGATCTTGTGATTCGTGAGATAATGGATCTTCTCTACAATCGCGACTGGGAAGCC ACGTTGAATTGGATCCCTGGAGATGCTAACCGCGTAGCTGATGAGCTAGCTGATATTGCTCGTGGCTTGCCTTCTTTCCA ACTGAGAGAGTATGATACCCCCCCTGATAGCTGCCGCCATCATCTGATGGCAGATGCACAGTGAAAAAACAGAAAAACCT GTTTGCCAACTAGCTATATATGCATGTTGCTTTTGGAAGATAAATAACTATCTTATGATAGCCTTGAATATTGTTGATTT TCAGTATGTTTGTGTAAGGATGGTTCTACATTTTATTGTTCTTGTTCATCTCTGAATCACATGTATGAAAAAGTGGTCAG TTTTATATGTGTTGCTTAATGAAATGTTGCTGTTCTGTTCAATCTGTTATTTGTGGGTGATTTAACACACAAAATTTGTT GTGCTTACTTATTACTTGGCTGATTCAAGTCCATAAAATTAGAGTTGGGGTTTTTAAACGCTCATATTTTACTCACCTGC TTCAATTAGTACTGATAGTTTGATTTTTCAGTATGTTTTGTTTAAGGATGGTTCTATTTTTTATTGTTCTTGTTTATCTC TGAAACACATGTATGAAGAAGTGTTCAGTTTCATTCACACTCTTTAATTAGTCTTCCTTGCAATATGTTTCTTACCTACT AGTAGATTCAATCTCATTTGGGATTTTGAAATCTCTAAAAATGAAAGAGTAATGCATCTACTTCATTCATGAACATGTTT GAAAGTTTGTCCTTAATGATCCTTATGTTCCGACCTCCGAATTACTAAGTGAACTCTCGAACCCTCTCTCTCCCTTAACA AGGATCTTATCTTTTTCCAATTAAGTTTGAAATTTTAGTAGTATTAACCCTGTAAGGTCAGAAGGAGAATTATTGAAATT ACTACTACTGTATATCACAAATTAG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0282600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTGAAAGAGGTGAAGGAGGAGGGTGGGGGTCTACGTTTCTGACAGTAGCAAGTGCAGCCGCCGCAGCGGCCACCGT AGCTCGCGGTTTATATGCTCTCCTCAAACAATACGAGCATGAGCCTGAGCCTAAGGCAGCTCATAACAAGGAGAAGGAGG TGTTAAAGGTGTGGACTAAACCGAAGATGGGTTGGATAAAACTGAACGTGGACGGTTCCCTTCAGTCAGAGTCAGCAGGT TGTGGTGGAGTTCTGAGGGACTCATCTGGAAAATGGATCAGTGGTTTCGCTAAAAAGTTGGCTCATCCCGGTGGTGGACA CTGTCCTCACAAACCAGAGGAGGAGGCCCTTTGCAGAGGGTTACAGTGGGCATGGGAGAGAGGCGAGAATAGAGTGGAGG TGGAGTCGGATCGTCAGGGGCTTGTTGATTCTGTGAAAAGTGGGAGCACAACCAGTGATCTTGTGATTCGTGAGATAATG GATCTTCTCTACAATCGCGACTGGGAAGCCACGTTGAATTGGATCCCTGGAGATGCTAACCGCGTAGCTGATGAGCTAGC TGATATTGCTCGTGGCTTGCCTTCTTTCCAACTGAGAGAGTATGATACCCCCCCTGATAGCTGCCGCCATCATCTGATGG CAGATGCACAGTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0282600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSERGEGGGWGSTFLTVASAAAAAATVARGLYALLKQYEHEPEPKAAHNKEKEVLKVWTKPKMGWIKLNVDGSLQSESAG CGGVLRDSSGKWISGFAKKLAHPGGGHCPHKPEEEALCRGLQWAWERGENRVEVESDRQGLVDSVKSGSTTSDLVIREIM DLLYNRDWEATLNWIPGDANRVADELADIARGLPSFQLREYDTPPDSCRHHLMADAQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 11 11 - –
Phobius
TRANSMEMBRANE
12 35 24 - –
Phobius
CYTOPLASMIC_DOMAIN
36 217 182 - –
PANTHER
PTHR47723
46 217 172 9.2E-32 –
PANTHER
PTHR47723:SF3
46 217 172 9.2E-32 –
SUPERFAMILY
SSF53098
63 188 126 3.79E-14
IPR012337
Gene3D
G3DSA:3.30.420.10
65 191 127 2.1E-16
IPR036397
CDD
cd06222
68 187 120 3.76851E-33 –
Pfam
PF13456
69 188 120 8.8E-21
IPR002156

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0004523
Molecular function RNA-DNA hybrid ribonuclease activity Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0282600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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