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LotjaGi5g1v0283200.2

Overview

Field	Value
Gene ID	LotjaGi5g1v0283200
Transcript ID	LotjaGi5g1v0283200.2
Related isoforms 1	LotjaGi5g1v0283200.1
Lotus japonicus genome version	Gifu v1.2
Description	Late embryogenesis abundant protein (LEA) family protein; TAIR: AT4G13230.1 Late embryogenesis abundant protein (LEA) family protein; Swiss-Prot: sp\|C4K4A3\|PYRD_HAMD5 Dihydroorotate dehydrogenase (quinone); TrEMBL-Plants: tr\|C6SX82\|C6SX82_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0283200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr5:59968992..59970335) extracted from Lotus japonicus Gifu genome v1.2.

AAAAGACAACATTGATGAATCAAAGTCTTAAAAATAGAAACTTGGGGGAGCCTGATTTGTTTATAAGTGTGTGGTAGCTA CAGCAGCAGAAGAGAAACAAGCATTGAATGAAGAGTACTTAAAACAAAAGATTAATTGAGAGAAATAGAAGAATGGAGGG GTCATCAATGAAGGAAGAAGAGAGGACAATGACTTTCTTCTTTTACCATCCATGCTCTTTTCTTGTAGAAGCACTTAGGA CCCTCTTCAAGTGTCTAGGATTTGAGAGTACTGAAACCAACACATGTTCTTCACAGGTCAAAGAAAATGAAACCTCACTT TCCAAACCGGCTTCAGGTGCATGTCCAGTTGTGGACTCGGCAAATTACTCTCCAGACAGCAGCAAGAAAAGTTCCCAAGA AGCTGCAGATCAACCAATCACAACTACTGAAAGCCTTGTATAGATGCTAATGCTAGTTTCTCTCTTTTTTATCTAAAGAA ATATAAACCCCATTTAACTTCTTTTTTTAATTAGTGGCAAAAACCTTAGCAATTCTATATAACAGGTTTACACTTTTATG CAGAATGCAAGTTCAATGCAAGGAGGTGGTCATCGAAGAAGGTCTGGTTCTAGCAAAGGGTCACCCCCTCAGCATAATAA GCATGAACTCAAAATACCATCACCATGACTCTACTCTTGGTTATTACTTCAATTTCTCATGTGTTAGTAAGCTTCTCCAT CTTTTCTTCAGACACCACCAACTTCTTTAGCAGATATAAAAACTTTTGCCTTTTTTTTTTAGTTTAACGCTAATATGCAC ATATTTTTTTGCAGGAATATCTATAAGGTGTGGTATTGGAAGTTCAGGACTTAATGGCAAGTCTTCTCAGAATAAACATG TAAACATATATAAGCTAGTTTCTCTAAGCTATTTTCAACCTTTCTTCCCAATTTTTTTCCTCTTTGCCATCTTGTGATAG AGTTTTGTATGTGTGTGGGAATTGGCTACTTACCCATATATGTTATATAGGGAGCCTTGCTTGTATATCAATTTATCAAT GAAGTTCTATATGTCCAACAAGAGTTTTTTCTTTTTCTAAGCATGCTGCAATGTGAATCTCGGCACAACAGTAAGGTAAG GTAGCTGCCATGTGACTTTGCGGTTACATGTTCGAACCGTGGAATCAGCCTCTTGCGAAAATGCAATGTAAGGCTGTATA CAATAGATCACAAAGTAGGTCCGGCTCATCCCTAAACATGCGCATAGAGGGAGCTTTATAACAAGAGATTTGCTTTTTTA TGCAGCAGTGCATACATATGCAACAATTAAGGCTTAATTGCACTTTTGGTCCCCTATGTTTCAC

Download Genomic Sequence

CDS sequence (LotjaGi5g1v0283200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGGGGTCATCAATGAAGGAAGAAGAGAGGACAATGACTTTCTTCTTTTACCATCCATGCTCTTTTCTTGTAGAAGC ACTTAGGACCCTCTTCAAGTGTCTAGGATTTGAGAGTACTGAAACCAACACATGTTCTTCACAGGTCAAAGAAAATGAAA CCTCACTTTCCAAACCGGCTTCAGGTGCATGTCCAGTTGTGGACTCGGCAAATTACTCTCCAGACAGCAGCAAGAAAAGT TCCCAAGAAGCTGCAGATCAACCAATCACAACTACTGAAAGCCTTAATGCAAGTTCAATGCAAGGAGGTGGTCATCGAAG AAGGTCTGGTTCTAGCAAAGGGTCACCCCCTCAGCATAATAAGCATGAACTCAAAATACCATCACCATGA

Download CDS Sequence

Protein sequence (LotjaGi5g1v0283200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEGSSMKEEERTMTFFFYHPCSFLVEALRTLFKCLGFESTETNTCSSQVKENETSLSKPASGACPVVDSANYSPDSSKKS SQEAADQPITTTESLNASSMQGGGHRRRSGSSKGSPPQHNKHELKIPSP

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR35771:SF2 View details on PTHR35771:SF2 Search for proteins/transripts with this domain View external data on PTHR35771:SF2	1	120	120	1.4E-23	–
PANTHER	PTHR35771 View details on PTHR35771 Search for proteins/transripts with this domain View external data on PTHR35771	1	120	120	1.4E-23	–
Pfam	PF17232 View details on PF17232 Search for proteins/transripts with this domain View external data on PF17232	1	54	54	2.1E-10	IPR035176 Show description in modal box View details on IPR035176 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	41	59	19	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	41	129	89	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	70	117	48	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0045087 View details of GO:0045087 AmiGO InterPro QuickGO	Biological process	Innate immune response	Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.	Subterm of View details of GO:0006952 View details of GO:0006955

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0283200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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