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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0284800 |
| Transcript ID | LotjaGi5g1v0284800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | HSP20-like chaperones superfamily protein; TAIR: AT4G02450.1 HSP20-like chaperones superfamily protein; Swiss-Prot: sp|P0C8Z0|Y8359_ORYSI Uncharacterized protein OsI_027940; TrEMBL-Plants: tr|I3STW9|I3STW9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0284800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60132575..60135733) extracted from Lotus japonicus Gifu genome v1.2.
ATATTAACCATCGAGAAAAATTCAATTTGTGATATATAGGTGCTATAAAACTATAACCCTTGTGTGCTCGGTGCTATAGC TTAGAAAACCCACCGCACTTCACACTCTGAGTCTGTTTTCCCGAGAAAATTCCAGAATGAGGTGCGTTTTCTCGAGAAAG TTCCGTTACACCGTGTTTCGTTTCCTTGATTTATGTCTTGATTTTTAGGAATTCCTTAGGACTTTACTTTTGTTGATTTA GGTTATTTGCTCATGCTGTATGTATGTTCTTCTCTGCTAATTTAACTGGAAAACAAGGATTTGCTTTCCTAGTTGTAGTT GATTTTCAATTCCATCCATTATCTGCACCATATGTTTTGACTTTTGATGTCTCAATTTGATTTCACACTCAAAACAGACG TTTGGTTAATGTAGGGGGTGTGAATTTCTTAGATTGATGCCCATTTAGATGTTCTGTACTGTTTAGCATGCATAAGAAAC TGAGATTATGACCCTTAAAATCTAGGACTAATTGGTTTTAGAATCTTTACTAGGGTCACATGTGATGGAACTAAATGTAT TCCAATCTGGGGGTCTATTAGTATACTTTGAATTGATTTAGCCATGGAATTACATAGAACAAGAAGTTGGTCAGAATACC CCCTTGCACTTCTCTTTGAATTTCACTTGTTGAGTAGTTGTGTAATGGATTATCTTTGAGATTTATATTTCAGCAAAAGT TTGGATACATTTGAGTCGACAATTTAAATAAAGTTTAGTTGAAGAAAAATTTCAAAGTTTTAGATCATAAGCTGTTATTT TGTTTATGTTCGTAAAAATTCCATGGGTGGTATGTTTATGTCATTATGAGTAAAGAAGACCATCGAAGCATCGATAAGGA GGGTTGGTAGACCTAATGAAGGATAGTCCATTAGTTAGATAACAGGGAGATTAAAGAAAACTATATGTCAAACCATAAAG ATTTTGGTTTAAATGATTTATTATTGAACTTGGTTCTTAAATGGACATTCGGTATCATTTGATCTATGTAGCTGACTTAC CAGTGGGAAAGGATTTGGTTGCTGTTATTGCTAGTATTATTTTTGCTTTTTACTGTAAAAAAGTAGCTCAATGGTTGTTA TTATTTGATGTATTAGTTAAGTATACTGTTGTGACTTGTATTGTTTAAGTAAGTTGTGGGAAAAACAAGTCATGCTGTGT TTCTGTGTCAGTTCAGGACATAATATTAAGCAAAATTTCCAGTTGTTTATATCCCTGAATTCACTTTGAATTTTAATTAC AGTCGCCATCCTCCTGTCAAATGGGCTCAGAGATCTGATGAGCTCTACATAACTATTGAGTTACCTGATGCTCAGGATGT GAAGCTTATACTGGAGCCAGAAGGAAAACTTTATTTCTCTGCAACTGCTGGTCCAGAAAATATTCCTTATGAGTTTAACT TTGACCTGTTTGACAAGGTTGATGTAAATGTAAGGGCCAGAATTCTCATATTGGTTTGTTAATCATATCTTTTCCACAAC TGTCTAACCATATGTATGCTGATCTTTCAGAATAGCGAATCCAGTGTTAGTAAAAGAAATATCATCTACTTGATAAGCAA GGCTGAGAGTAAATGTTGGGACAGATTGTTAAAGCAGGGAGGGAAACCACCGGTGTTTTTGAAGGTAGATTGGGACAAGT GGGTTGATGAAGATGAGGAACAAGAGGATGATAAACGTTAGTAATTATACTACTATTTCTCTGAATACATTCCATTTAGC ATAAGTTTGCTCATTTGCAATTGCATATTGTTTTCAGCTGGGCCTGGCGCAGACATGGACTTTGGTGACTTTGATTTTTC TGTAAGTTGCGAAATTTTAGTTCATAATTCACGTATATTTGTGACTTACTGAGTTCTTGGCACTTTCTTTTTTTTACAAA AAATCCAGAACTTGAACATGGATGGAGGCGAGGGACTGGAAGACGTGGCAGATGATGATGATGATGGTGAGAACATCTAA CCGTTGTCTGTTATTTAATTTATGGAACACAGCTTTATTAATTCTTGTGATTTTAAGTCTTAATATGGAGTTTGTTTGGC TTGTTTAGATGATGAGAGTGACATAGAAGATGAGGTCACAGGACAAGCATCAGCTGATAATGAACCTGACTCAAAAGGCG CCGTGAGCAGCAATCCTAGTGTTGAACCTGATGCTAAAAAGTAACTTGAAATCGTAGACCTTATCATAGAAATAGCCTGC ACTGTAAGGATGGGTATTTCAACTTACAAAGCTTGCGTGCTTGGATAGAAACCTGTTGGGATTTTTAGGTTGCTCACTGA TTTGCTTCATTTTGCATTGGATTTTTTTAACAAGAGGAGAGTTGGCTATGTATGTTATCATTACAGCGCTATTATGACTG CCATGTCTTGGTTTGGGTTAGGTGGTTTAGTATGTGAAAAAAGGTCTCGTAGGTGATGTTAAATATCATATTGACCAAGA GCTACGACAAAAGAAGAATTATGGTGAAAGAAGTACACTTATAAATGAGAGGATTGCCTCACCTCTAGGATAGTTTTTTG GGGATTAAGTTAGGTTCAATTAAAATTCTACACATAAAATCTGATCCTAGATACATTGTGTGACCACCAATTGAGACTAC TCCATTGATATCTCATGATGGCGATTTAGATTAAAATTCTATGACATCAAAGCTAATCCTGGATTCATTGTTTGACCACC AATTGAGACTGCTTTGTTGATATCCCATGATGGGGATTTGGATATGAATAGGAAGTTGAACTCCACGTTCCACTTGTCCA GTTCTGGGCATGAGAGGTTGTTAAGTCTTGTATTGACTGAGATATATGACAAATGAAGTACAATCCTCACTTATAAACTA GTTTTTATTAAAGTTTGTCTCACCCCAAATTCTAATATGTGAGATGGCATCACAAAATGATTCAAACCTCTCTTAACCAT AGAAAGTCTTTAGTGCACAGAGCATTCCATAATTATTTCTTCTCATCTCAAGATGATGATAACCAGACAAGGGTAACACA ATGAGCCGTCCATTAGACAAAAACTTCTACACTTCGACTCCATGTGATGATTCTATTTCCTTTTTCTTTTAATCATGAGG TCGGTTGCAAAAACTTCTACACTTCAGTTTCTCTTTCAT
CDS sequence (LotjaGi5g1v0284800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTCGCCATCCTCCTGTCAAATGGGCTCAGAGATCTGATGAGCTCTACATAACTATTGAGTTACCTGATGCTCAGGA TGTGAAGCTTATACTGGAGCCAGAAGGAAAACTTTATTTCTCTGCAACTGCTGGTCCAGAAAATATTCCTTATGAGTTTA ACTTTGACCTGTTTGACAAGGTTGATGTAAATAATAGCGAATCCAGTGTTAGTAAAAGAAATATCATCTACTTGATAAGC AAGGCTGAGAGTAAATGTTGGGACAGATTGTTAAAGCAGGGAGGGAAACCACCGGTGTTTTTGAAGGTAGATTGGGACAA GTGGGTTGATGAAGATGAGGAACAAGAGGATGATAAACCTGGGCCTGGCGCAGACATGGACTTTGGTGACTTTGATTTTT CTAACTTGAACATGGATGGAGGCGAGGGACTGGAAGACGTGGCAGATGATGATGATGATGATGATGAGAGTGACATAGAA GATGAGGTCACAGGACAAGCATCAGCTGATAATGAACCTGACTCAAAAGGCGCCGTGAGCAGCAATCCTAGTGTTGAACC TGATGCTAAAAAGTAA
Protein sequence (LotjaGi5g1v0284800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRHPPVKWAQRSDELYITIELPDAQDVKLILEPEGKLYFSATAGPENIPYEFNFDLFDKVDVNNSESSVSKRNIIYLIS KAESKCWDRLLKQGGKPPVFLKVDWDKWVDEDEEQEDDKPGPGADMDFGDFDFSNLNMDGGEGLEDVADDDDDDDESDIE DEVTGQASADNEPDSKGAVSSNPSVEPDAKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 131 | 131 | 8.55E-30 | ||
| PANTHER | 1 | 175 | 175 | 1.7E-75 | – | |
| PANTHER | 1 | 175 | 175 | 1.7E-75 | – | |
| Gene3D | 2 | 121 | 120 | 5.3E-34 | ||
| ProSiteProfiles | 2 | 91 | 90 | 15.411 | ||
| CDD | 5 | 109 | 105 | 1.01376E-41 | – | |
| Pfam | 6 | 81 | 76 | 1.5E-7 | ||
| MobiDBLite | 111 | 191 | 81 | - | – | |
| MobiDBLite | 143 | 167 | 25 | - | – | |
| MobiDBLite | 168 | 182 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0284800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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