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LotjaGi5g1v0284900.3

Overview

Field Value
Gene ID LotjaGi5g1v0284900
Transcript ID LotjaGi5g1v0284900.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description F-actin capping protein beta subunit; TAIR: AT1G71790.1 Subunits of heterodimeric actin filament capping protein Capz superfamily; Swiss-Prot: sp|Q9M9G7|CAPZB_ARATH Probable F-actin-capping protein subunit beta; TrEMBL-Plants: tr|I3T7I6|I3T7I6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0284900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:60136745..60137589) extracted from Lotus japonicus Gifu genome v1.2.

ATGTGGGAAGATGACAATGAAGGTTTTGTAGCGTGCTTTTTAATAAAGAAAGGTAAACCTGCTGTCTGAGTATAATGGGA AAAAACTTCCATCCCTTTAACCTTTCCTGCTGATGTGCCATTGTTTCCAATTTTGTGGTTATAGATGGCTCAAAGACAGG GCAAGGTCGACGCGGATATCTAGAGGAAGGAGCATGGGATGCTATACATGTCATAGAGGTAAAGTGTCTTTACATTGAGT TGAAGACTAAGCACTGATAAATGCTGTGTCATACTCATAATGACTTTTAATCCTTTGGAAAAATATAACACTAGTTTATA TTTTTCAGACTCTTTCCTTGATGGTTAATTTTAAAATAAAATTTATATAGGTGGGACCAGAGGAAGAGGAAAACACCAAT TATCGTTTAACCAGTACAGTTATGCTGACTTTGACTACAAGTAATGAGTCATCAGGAACTTTCAGTTTGTCTGGATCAAT TAGACGTCAGGTATTTTCTATTAGAATTTGGTCATGTTGACAATTAGATCTTCTGGTTAACAATTGTATACAAAGTTTGA TTGCTTTCTGTCTCAAGAAGTCACCTGATGAACAATGCACCTTTATTAAATATTCAATCATATGGTTGTTGCTTGATGAA GCCACATAGATTGCATCAGACTTCGTAATTTCTGTAAGCTCTTTTTGTCATCCTAAATTATTTATTGCTTATACTTCAGA TGAATATGAAGCTATCAGTTGCTGATGGACATCTTTGTAACATGGGAAGAATGATTGAAGAAATGGAGAGTAAGCTGAGG AACTCACTTGATCAGGTACCTCTTGATATTGGATTCAAGCTTTAA 

CDS sequence (LotjaGi5g1v0284900.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTGGGAAGATGACAATGAAGGTTTTGTAGCGTGCTTTTTAATAAAGAAAGATGGCTCAAAGACAGGGCAAGGTCGACG CGGATATCTAGAGGAAGGAGCATGGGATGCTATACATGTCATAGAGGTGGGACCAGAGGAAGAGGAAAACACCAATTATC GTTTAACCAGTACAGTTATGCTGACTTTGACTACAAGTAATGAGTCATCAGGAACTTTCAGTTTGTCTGGATCAATTAGA CGTCAGATGAATATGAAGCTATCAGTTGCTGATGGACATCTTTGTAACATGGGAAGAATGATTGAAGAAATGGAGAGTAA GCTGAGGAACTCACTTGATCAGGTACCTCTTGATATTGGATTCAAGCTTTAA 

Protein sequence (LotjaGi5g1v0284900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MWEDDNEGFVACFLIKKDGSKTGQGRRGYLEEGAWDAIHVIEVGPEEEENTNYRLTSTVMLTLTTSNESSGTFSLSGSIR RQMNMKLSVADGHLCNMGRMIEEMESKLRNSLDQVPLDIGFKL 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 115 115 1.2E-42
Pfam 1 115 115 9.4E-32
PANTHER 1 115 115 1.2E-42
Gene3D 1 118 118 2.3E-35
SUPERFAMILY 4 115 112 2.62E-21

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component F-actin capping protein complex A heterodimer consisting of alpha and beta subunits that binds to and caps the barbed ends of actin filaments, thereby regulating the polymerization of actin monomers but not severing actin filaments.
Biological process Barbed-end actin filament capping The binding of a protein or protein complex to the barbed (or plus) end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits.

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0284900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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