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LotjaGi5g1v0287400.4

Overview

Field Value
Gene ID LotjaGi5g1v0287400
Transcript ID LotjaGi5g1v0287400.4
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Choline kinase; TAIR: AT1G71697.1 choline kinase 1; Swiss-Prot: sp|Q9M9H6|CK1_ARATH Probable choline kinase 1; TrEMBL-Plants: tr|I3SYS4|I3SYS4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0287400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:60426948..60431977) extracted from Lotus japonicus Gifu genome v1.2.

ACATCAGTGTTTGTATCACCAAACCAATCTCTAACCACCTTGCTCTGCTTCTATCCCCTGCTTCTCTGGTCAGTTCCCAA CTCTTAGAATTCCACCTTTTTTTCTTTTTCATTTAGATCATTCTTCACGTATTGTTGATTCTGATTCTCTTTAATCAACT GGGTTCTCAAAAAATATCTTTCTTTTTTACGCAATCTTCACTGCAGGGAAGTTACTTTCACACACTTTTTGTATCAACAT TTCCCCTGTTTTTGAACCCTGTATTCCTCTGTTTCATATCATACGTGAGTATCTAAAACACAAATTCTATTCTTTTTACC AATTAATTTATAAAGGGTCATCAATTTATTATATTTACTCTCAATTGGGTTTTCAAATATTGAATCTTTCTCCATTTGTT TATGCATGCACATACCCACTTAACTAAATACTCTGTTTCAGCTTCCTCTGTTTTCAGCTTCCTCTGTTTTCAGCCCAAAA CAGAGCATCAGTTTCTGTTTATCATCATCAACTCATCATTCATTGAGGATGGCTGTTAAGACAATTGAATTGCTGAAAGG AAGTGCATCAATTGAAGAGATAATTGAGGTTCTGACAACAGTGGCTTCGGATTTGGGGGATGATGTGGTCGATGATTTGA GCACTTTGCAGGTGATTCCATTGAAAGGTGCAATGACCAATGAGGTTTTCCAGGTAAATTGGCCAACAAAAAATGGTGAT GATCTGAGAAAGGTGCTGGTTCGATTGTATGGCGATGGTGTTGAAATTTTCTTCGACAGGGAGGAAGAAATTCGAACCTT TGAGTGCGTTTCAGAACATGGTCAGGGGCCACGCCTTCTTGGTCGGTTCACCTGTGGCAGAGTAGAGGAGTTCATTCATG CTAGGGTATGTCATTATCTTCTTCTTTTGTTCTATAATATTTTTATTTATTAAATAACTTTATAGGTATGTTTCAGTAGA AAATTATCATTGATAGGTACTTAGCTAGGTAGATATATAATTGGAGTTGAATTTCTTTTTGCCTGGTTTAAAATTGGGGT TGGCGTTGCAGTGTAAAATTGCGGATAAATTCAGGTTGATGCAGTCCTCTAATTGCAATGCTGTTGCGGGTCTGACCACA ATTGCACTTGCGGATTACAATTTGAAATTTTGACTTTGTCAACCCATCATGTTTTAAGGGTACAAGTTGAGAATATTACT ATAAAATGTATTCCTCCATTCACATATTGACACATGTTTCATGTTTTATGAATAGTTAGTTTTAGGCATCATATGAAAAA TTTGGTTTTATATACATCATCACTGTCATGACTAAGATATTGTTGAAGAAGTCAACAAATATAAATTATTTATTAATTTT TATAATTACTTATTTAAAAGGACAGTATTTAATATATCAGTAGCAATAAAGGGAGATTATTAAAAATATTTATTACTCAG TCAATAGTAAAAAATAGTCAATTGACTAATGCTCTTATTTAATTTTTTGATCGTGACTAATGCTCTTAACTTATAATCCT GAATATTTGGGTGCATTTAATATTATTATTTAAAGAGTGAACCCCATTTTCTTGCCCAACTCATCAAATTAGTCCCAATA CTAAGGAAAATACAAAAAAGCCCTCAACTTATTCTTGCCATTTATTTTCTTTCATTACAGTTTTTGAAACTGTGTTTTCT AATTTAAAAAACTGAAAATTTAAAACATGTTCGTTTTTAAAATATATCTTTCAAAATCATTTTCAATTTCAATTTCTAAA ACTAAAATACTAGAATAATTAAAATATATTTTATGTTTCAATTTTTAGTTTTCAAATTACAATTTTTTAATGTTGAAAAA AATCTCATTCAAACAATTTTTTATTTATTAAAAACACTTTCTAAAAATAGTTTAACTATAGTTTTAAAAAACTGCAATCA AACGTTTACTTAATTCTTTGTGAATGACTAATGTGATTAACCAAAACAAAGATAGATAAGTGTTGGTCTAGTGGTGAGTG TTGTCTACGTATCTGTAAGTGTGAGAACATAAGTTTGAATCATTTGTTGTGGTTGACTGCTACATCTCTCTACTGATTAA AGAAAAAACAACAACTTAACACGTGAGTAACTGTGGGTTTGAGTGTTAGATTGCCTTTATTAAGTTATGAATTAATTTGA GGATCATTATCCAGTTTGGAATAAATTTGGGTCATTATTTTCAAAGTGGGTTAAGGCTTGTTATTAGTAGGTTATCCTTT GAGAAATATGGAGGTCTGTGTAAGAACCAAATGCCAGTCACCCTTCACCATAAATTTAGTTTATATGAAAATAGAAAAAT AGAACCCAGGACTAATTCAATTTATGTTTGAGCTTTGAGACTATATGCTCAGTTTGAAAGTTAAGTTACTTTATTCTTTA GTCAAGAGGAACTTTTCTTTTTGTCGTACTTTCTATTTTTCTTATTTTATTCCCTTTTGGAACAATGAAGGGTAACCAGT ACTTGTTAGTTGTCATTAGGAATAACTAATAATTAAGAAGCATCTTTAAGAAACTCAATTGAATGGTGTTGAGTCAATGG AACAGGATCAGGTGCTCTGCTCTTAGGTGCTTCTTTAACCATTCTTTTCCCCTAACTTCTTTCCTAAATATTATTTATTC CACTTAATAATAAAGAATTTTCAAAAAACTTAATAATAAAACAAATATACTAAGAACACCTTATTCAAAGGTCATCTGAG ATTTTTTATTCATGCTCATGCATGGAAAGATCAGACTTGAGAGATCTTATTTCCTGACTATTTCAGTCATAATATTATGA AGGGGAAAAATATATTGAACAAATTTAAAGGTGAGCACCTAAGTATTGAGTTCTAATGGTGATTAAAATCAATGAAAATT TTGTTTCAGAATTTAAAATCAATTAAGGTTATGTTTCAGTCATCATAACTTGGTAGGCCTAATACCTCATCAGTATATCA CTATGGGCTATGGTTTTCCTTGAGACCATCCACTCAGTGGTTTTATACTGTTAAATCTGTTCCTTTCTATCTGCTGTTGA TGTTACTTTCTAATTTCCAATTGATTAAACTTTAAAATCAACTGAAGGAGTCTTAGAAAAACAAAAATGATGAATCTGGC ATGGTCTTTTGCACTCCTAGTATAACAATTGTGCATAACAAGTTTTTATCTTTTTTTTTAGACTCTCTTGGCTGCTGACC TCCGCGACCCTGACATATCTGCTTTGATAGCATCTAAGATGAGAGAGTTCCACAACCTTCATATGCCTGGTGCAAAGAAG GTTCAGATTTGGGAGAGAATGAGGTAAATATAAATCAAATCAATATTCAAACCCATATTTGTCTCTATGCAGAATATTAA ATGCTCTCCACATGTTATTTACTAGGAAGTGGCTTGGTGAAGCCAAAAGTTTGTGCTCCCCAAAGGATGCAACATTTTTT GGCTTGGAGAATCTGGATGAGGAAATAAATAGCCTTGAGAAGAAGTTATCTGAAGGATATCAAGAGATTGGTTTTTGTCA CAATGACCTGCAATATGGTAACATAATGATGGATGAAGAGACAAGATCACTAACTATAATTGTGAGTTGTGGCTGTAAAT TATTTACCTCTGGTTTCCCCTGTTCCATATTTTTTGTTCCTGTTCTAATATTTTTAATGATGCAGGATTATGAATATGCG AGTTACAATCCTATTGCATATGACCTGGCAAATCATTTCTGTGAAATGGTGGCTGATTACCACAGTGACACACCTCATGT TCTTGACTACAGCAAATATCCTGGTAAAGTTTTGGTTTGTAATATTTTGATTGCTCGGTGAGATCTTTCTGCAATGCTAA CACATCAATTTGCATATGTTAAAACAGGACTAGAGGAGCGTCAAAGGTTTATCCGTATCTACCTGAGTTCTCAAGGTGAG TCCAGTGACCTGTCCACTCCTTATCTCTATTTATTGTTTCTATACTTTTAGCATCTTTAAGCCAAAGCACAAGGAGACTT ATATATGCAAAATGCCGAGACTAATTCTTTAACATAGAGCAAATTTTGCATAAGCACACTGTCTATAGGTACAAGTGATA AAAAGCTCAATGTATTTTCAAATTTAAAAAATAATCATTACTGATGTTGGTGTTATTGTATATTTTCTTGAACTTTTCAT TAGTTGTATCTATAGACACTGATATCATACAAAAACTACTCCAGTCTGTGCTTTATGCGTAGCTTACATTCATTTGTTTT AATTTAAGCTTTAATTAATTAGATTACTTATCAAATTAGCTCATGAACTCTACATTTTGAGTGTGATGTCTCATTCAGTC TTCAACTTCATGCCATGCTAATGTAGCTCTAAGAATCATTTCATGCAGGTCCAAAGTGATATGGCATACAGCCTGTCAAA ACTCATAATCATGTTATTGAAGTTTAAATCATACCTAAATGCTTCTGAATCTCATATAATTGTTTCTCAAATTTATTTGT CAATTCCTTGTATACATGCAGGCAAGAAACCCAACAATGCTAAAGTGATCCAGTTAGTGAATGCTGCAGAAAAATACACG CTCGCAAACCATCTATTTTGGGGCTTGTGGGGACTTATTTCTGTAAGTTTCTGGTTACTTTAAACAATGTTGTCACCTTG AAATTCTAGCTATGTATGCTCATATATATTTTTACATGTGATTGCAGAGTTATGTCAATAAAATTGACTTTGATTACAAA GAGTATGCAAGACAGAGGTTTCAACAATACTGGTTGAGGAAGCCTACCTTATTGGACACACAAAGCATCCAACTATGAAT TGCTAATTTTTAACTATCAATAACATCTAAAGGCATGATGTCCAGCCAATAGTATATGTAAATAATATAATCACGAACTA TGTGTGATGGGTTTTTGACAATTTTAACTAAATTTGCTTATCAATCCCTTTCTTTTGGGATTAAGTTGAGTGATTAAATT GAGAATCTGTAGTTATGTTTTTGTCCTTTCAGCTTTACACATTGAATGATGTCACATAATGTTTGAGGTT
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0287400.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGTTAAGACAATTGAATTGCTGAAAGGAAGTGCATCAATTGAAGAGATAATTGAGGTTCTGACAACAGTGGCTTC GGATTTGGGGGATGATGTGGTCGATGATTTGAGCACTTTGCAGGTGATTCCATTGAAAGGTGCAATGACCAATGAGGTTT TCCAGGTAAATTGGCCAACAAAAAATGGTGATGATCTGAGAAAGGTGCTGGTTCGATTGTATGGCGATGGTGTTGAAATT TTCTTCGACAGGGAGGAAGAAATTCGAACCTTTGAGTGCGTTTCAGAACATGGTCAGGGGCCACGCCTTCTTGGTCGGTT CACCTGTGGCAGAGTAGAGGAGTTCATTCATGCTAGGACTCTCTTGGCTGCTGACCTCCGCGACCCTGACATATCTGCTT TGATAGCATCTAAGATGAGAGAGTTCCACAACCTTCATATGCCTGGTGCAAAGAAGGTTCAGATTTGGGAGAGAATGAGG AAGTGGCTTGGTGAAGCCAAAAGTTTGTGCTCCCCAAAGGATGCAACATTTTTTGGCTTGGAGAATCTGGATGAGGAAAT AAATAGCCTTGAGAAGAAGTTATCTGAAGGATATCAAGAGATTGGTTTTTGTCACAATGACCTGCAATATGGTAACATAA TGATGGATGAAGAGACAAGATCACTAACTATAATTGATTATGAATATGCGAGTTACAATCCTATTGCATATGACCTGGCA AATCATTTCTGTGAAATGGTGGCTGATTACCACAGTGACACACCTCATGTTCTTGACTACAGCAAATATCCTGGTAAAGT TTTGGTTTGTAATATTTTGATTGCTCGGTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0287400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAVKTIELLKGSASIEEIIEVLTTVASDLGDDVVDDLSTLQVIPLKGAMTNEVFQVNWPTKNGDDLRKVLVRLYGDGVEI FFDREEEIRTFECVSEHGQGPRLLGRFTCGRVEEFIHARTLLAADLRDPDISALIASKMREFHNLHMPGAKKVQIWERMR KWLGEAKSLCSPKDATFFGLENLDEEINSLEKKLSEGYQEIGFCHNDLQYGNIMMDEETRSLTIIDYEYASYNPIAYDLA NHFCEMVADYHSDTPHVLDYSKYPGKVLVCNILIAR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22603
1 265 265 5.7E-140 –
PANTHER
PTHR22603:SF72
1 265 265 5.7E-140 –
SUPERFAMILY
SSF56112
36 266 231 2.56E-70
IPR011009
Gene3D
G3DSA:3.30.200.20
38 115 78 7.3E-70 –
CDD
cd05157
40 266 227 2.1774E-97 –
Pfam
PF01633
67 265 199 5.5E-71 –
Gene3D
G3DSA:3.90.1200.10
75 266 192 7.3E-70 –
Coils
Coil
180 200 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0287400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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