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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0287900 |
| Transcript ID | LotjaGi5g1v0287900.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transporter-related family protein; TAIR: AT4G09810.1 Nucleotide-sugar transporter family protein; Swiss-Prot: sp|Q9SRE4|UGAL2_ARATH UDP-galactose transporter 2; TrEMBL-Plants: tr|A0A151SYQ3|A0A151SYQ3_CAJCA Putative membrane protein family; Found in the gene: LotjaGi5g1v0287900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60481825..60484335) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTCCGGCTAGCAAGGCTGAGAAGAAGGCAGCAGTGGATGCAGCTGCATGGATGTTCAACGTTGTCACCTCTGTTGG AATTATAATTGTAAACAAAGCTTTGATGGCTACATATGGCTTCAGTTTTGGTAAATTCCCTTTCTAATTTCTTAATTGAT GTCTTTCTATTGCTCTACTTTGTCTTGTCCCAGTTAATATATCATCACACTTCAATATTAATTTGCCTTTACTGCCTGCA GCTACAACATTAACAGGTCTTCATTTCGTTACCACAACTTTGATGACTGGCGTTTTAAGGATGCTCGGATATGTCCAGCC ATCTCATTTACCCTTGTCTGAACTTTTGAAGTTTGTTGTCTTCGCTAACTTCTCTATCGTTGGAATGAATGTCAGTCTAA TGTGGAATTCAGTTGGATTCTATCAAGTGAGTTGGGATGAATTTTAGCTTTTGGTCCATTAATTCGTTCAGGAGTTATAT TATTAACTTTTCATTTCCCATTGGCAGATTGCTAAGTTGAGTATGATCCCTGTATCTTGCCTGTTGGAAGTTGTTCTAGA CAAGATTCGGTATTCAAGAGACACAAAACTGAGCATAGGTGTAGTTCTTTTGGGCGTTGGTGTTTGCACTGTTACTGATG TGAGTGTTAACACAAAAGGTTTTATTGCTGCCTTAATAGCAGTATGGAGCACTGCTCTGCAACAATATGTAAGTGTGACA TTCTACGCTACTTGTGACAAACAGTATCTGTTCAAACTTAAATGGCATCACTGAATAATAAATAGAGGTGGAATCAAACA TGCATATTTGCAATATCATTTGTGAAAATTGTGTTACAAATTATGCTTCTATGTTTATGTGAATGATTTTGCAATTTTCG TCCTGGTATCATAACTCTTGTTCGGTTAATTGGCATAAGGTGTCTCAATCTGAACTTTGTTCTGACTTATTTTGTTCCAT TCAATACTTATGTGTTTTGAAATCTTTTCCCTGCAGTATGTTCATTATCTTCAACGAAAGTATTCACTAAGCTCATTCAA CCTTTTGGGGCACACAGCGCCTGCTCAGGCTGGATCACTACTGTTAGTGGGCCCGTTTCTAGACTATTGGTTGACAAACT ACAGAGTCGATCAATATGCTTATGACGCATACTCACTGGTAAGTTCTGTTTCACAGAAAGATGTCAATGCTATTAAATTC AATGTATAGATCCCAGATATTTATTTATCTGGGAAAATAAGTTCCACGTGTAGATGCAAATGAATGGCTTGATGTGTTAA ATCAACATTGAATTCAACTTAAAATGTATTAGATGATTTTTTTTATGATATCTATGTTCTTGTTTGGTTGCCTCTGATTG TCCATGCTAAATCATCAATTTAATAATGTATATCATACAAGTGTGTATTTATATCAAAAAACAAAAGATGGGGGAGGCAT ACATTGACCTATGTAAATAAAGGTATGGCTTAAATGAGGAAATAAATTTTCCTTCTTCATCCAACTAAACAGTATCTTCT CAAACAAAAGAGATGGTCCATCTTTTACTTTAGAGTTTCAATATTTTTATCCAGCTGAACTTTTCTTCAGAGTCTGACTG TTGAAATTTGGTTGCTTTCCTTTCATTATAGCTACTTGAGTAACAGTAGGAAATTTTATTCTGCATGTAGTGAGCATTTT TCAGTGAGTATATGTAATGATTGTCATTGAAGGACTCTTTTGAATTTTATTAAAGGTTTGTAAATAATATAGGAAAACAA AACAGTCAACCAATTTTGATGAACCTAAAAGTTGTAAAATGAAAGTGAACATGTTTTGGTGAGGAGTATTTTAGACTTTA GTACCTATGCACTGTGTAAAATGTTTTATACAGACATCCACTTAGGTTTCCCCATTTTCCCACATCCTAATTAAATTAAA ATTAGAAAAATATCAAAAAGGCAAAATGGTGGGATAAGATTGGAGATCTGTGTAAAATTCCTTACTAGGCATATCAACTT TACATAAACACAATAACAAGGACTCATATTTGAAACCTATGTGACTATGTCTGTCTTATGTGGGTTGATATTGACCTTCA CTAAAGTTCTGATCTTTTTTGTTGTTGAATTTTGCAGATGTTCATAATTCTGTCATGCACCATTGCAGTTGGGACCAACC TCAGCCAGTTTATCTGCATTGGAAGATTCACCGCAGTTTCTTTCCAAGTACTAGGCCACATGAAGACAATACTTGTCTTG ATAATGGGGTTCTTTTTCTTTGGGAGGGAGGGTCTCAATCTTCATGTGGTTTTAGGGATGGTAATAGCTGTGATTGGAAT GATATGGTATGGCAATGCCTCATCAAAGCCTGGTGGAAAAGAACGCTGGAGTCACTCTCTCCCCACCAGCAAAACATAAA GCTGATAGTTTAACACCATACATAACATGTTTGGATCCGTTTATTTTTTCTCAATTGATTCTGGCAGTTAGAAGCTACTC AGAAGTCACAAAAGCTTTTCCCCATAATTGA
CDS sequence (LotjaGi5g1v0287900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCGGCTAGCAAGGCTGAGAAGAAGGCAGCAGTGGATGCAGCTGCATGGATGTTCAACGTTGTCACCTCTGTTGG AATTATAATTGTAAACAAAGCTTTGATGGCTACATATGGCTTCAGTTTTGCTACAACATTAACAGGTCTTCATTTCGTTA CCACAACTTTGATGACTGGCGTTTTAAGGATGCTCGGATATGTCCAGCCATCTCATTTACCCTTGTCTGAACTTTTGAAG TTTGTTGTCTTCGCTAACTTCTCTATCGTTGGAATGAATGTCAGTCTAATGTGGAATTCAGTTGGATTCTATCAAATTGC TAAGTTGAGTATGATCCCTGTATCTTGCCTGTTGGAAGTTGTTCTAGACAAGATTCGGTATTCAAGAGACACAAAACTGA GCATAGGTGTAGTTCTTTTGGGCGTTGGTGTTTGCACTGTTACTGATGTGAGTGTTAACACAAAAGGTTTTATTGCTGCC TTAATAGCAGTATGGAGCACTGCTCTGCAACAATATTATGTTCATTATCTTCAACGAAAGTATTCACTAAGCTCATTCAA CCTTTTGGGGCACACAGCGCCTGCTCAGGCTGGATCACTACTGTTAGTGGGCCCGTTTCTAGACTATTGGTTGACAAACT ACAGAGTCGATCAATATGCTTATGACGCATACTCACTGATGTTCATAATTCTGTCATGCACCATTGCAGTTGGGACCAAC CTCAGCCAGTTTATCTGCATTGGAAGATTCACCGCAGTTTCTTTCCAAGTACTAGGCCACATGAAGACAATACTTGTCTT GATAATGGGGTTCTTTTTCTTTGGGAGGGAGGGTCTCAATCTTCATGTGGTTTTAGGGATGGTAATAGCTGTGATTGGAA TGATATGGTATGGCAATGCCTCATCAAAGCCTGGTGGAAAAGAACGCTGGAGTCACTCTCTCCCCACCAGCAAAACATAA
Protein sequence (LotjaGi5g1v0287900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPASKAEKKAAVDAAAWMFNVVTSVGIIIVNKALMATYGFSFATTLTGLHFVTTTLMTGVLRMLGYVQPSHLPLSELLK FVVFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCLLEVVLDKIRYSRDTKLSIGVVLLGVGVCTVTDVSVNTKGFIAA LIAVWSTALQQYYVHYLQRKYSLSSFNLLGHTAPAQAGSLLLVGPFLDYWLTNYRVDQYAYDAYSLMFIILSCTIAVGTN LSQFICIGRFTAVSFQVLGHMKTILVLIMGFFFFGREGLNLHVVLGMVIAVIGMIWYGNASSKPGGKERWSHSLPTSKT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 6 | 318 | 313 | 2.7E-196 | – | |
| PANTHER | 6 | 318 | 313 | 2.7E-196 | – | |
| Phobius | 12 | 31 | 20 | - | – | |
| TMHMM | 15 | 32 | 18 | - | – | |
| Pfam | 23 | 297 | 275 | 1.4E-15 | ||
| Phobius | 32 | 42 | 11 | - | – | |
| TMHMM | 39 | 61 | 23 | - | – | |
| Phobius | 43 | 66 | 24 | - | – | |
| Phobius | 67 | 77 | 11 | - | – | |
| Phobius | 78 | 96 | 19 | - | – | |
| TMHMM | 81 | 103 | 23 | - | – | |
| Phobius | 97 | 101 | 5 | - | – | |
| Phobius | 102 | 121 | 20 | - | – | |
| Phobius | 122 | 132 | 11 | - | – | |
| TMHMM | 133 | 152 | 20 | - | – | |
| Phobius | 133 | 150 | 18 | - | – | |
| Phobius | 151 | 155 | 5 | - | – | |
| Phobius | 156 | 174 | 19 | - | – | |
| TMHMM | 157 | 174 | 18 | - | – | |
| Phobius | 175 | 185 | 11 | - | – | |
| TMHMM | 181 | 203 | 23 | - | – | |
| Phobius | 186 | 207 | 22 | - | – | |
| Phobius | 208 | 218 | 11 | - | – | |
| Phobius | 219 | 238 | 20 | - | – | |
| TMHMM | 223 | 245 | 23 | - | – | |
| Phobius | 239 | 249 | 11 | - | – | |
| Phobius | 250 | 273 | 24 | - | – | |
| TMHMM | 252 | 274 | 23 | - | – | |
| Phobius | 274 | 278 | 5 | - | – | |
| TMHMM | 278 | 300 | 23 | - | – | |
| Phobius | 279 | 299 | 21 | - | – | |
| Phobius | 300 | 319 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0287900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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