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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0289300 |
| Transcript ID | LotjaGi5g1v0289300.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polypyrimidine tract-binding-like protein; TAIR: AT1G43190.1 polypyrimidine tract-binding protein 3; Swiss-Prot: sp|Q6ICX4|PTBP3_ARATH Polypyrimidine tract-binding protein homolog 3; TrEMBL-Plants: tr|I1NH38|I1NH38_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0289300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60602945..60610681) extracted from Lotus japonicus Gifu genome v1.2.
AGATAAGCATGAATGTCCAAATCAGAAGACAAAAATAGATGTGGATAAGTTTTGGCTGAGTCCAGTAGCATGAGTGTGGT GGTAACAAAAGTTAGGTCAAATCTTCAAACATTATGTATTACCTTAAAAATTCAAACCAAGGTTATCTCAGAATAATATA AATAATCTCAAACAGAGTTACAAGTGTATATATGTAACAACAACATAGGGTAAAGTAAATTCATGTGTGCCGCGGCCACT CTGCGATAAAGCTCTCTCTCTCTCTCTCTGGTTTCTCACTTTCTCTGTCTCTGTCACTCTCTTCCAGGCAAGTTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGACCTATCTGATTTTCTGTTCTGAACCAAGTAATGTGCAGGGTGT TTGTTGTACTTTCTTTGCTGAGATGTCAATGATTTAACGCAGATTTGGGTCTCTGACCTGGAATTTTGACATGCCCTTTT CTCCTTTTGGGGTTTTTTCACTGTTCTTTGTTCTGGGTAGTACCTAGATTCAGGTCTCCAATTGGGTATGCGAGTTTCAT CTGAATTTGATTGAATATCGGATAAAAATTGAATCTTTTTGTTTCCCGTTTTTCTTGTTTCTTGATTTATGAATACCCAT GATTCTGTTTAATTTGCATTGTGATTTCTTGGTATCTTGATTTAGTCCAATTGGATTTTGAAAGAAAATTGGAATGTGGG TTTTACTTCAGAGTGAAAATTTCCAAGCTTGTTGAATGTGATCTTTACTTCAGATTGATTCATTTCAGACTAGACAGCTT TGAATTGAACTAGTTTTTTTTATAAGCCTTTGAATTGAACTAGTAAAATGAAAGAGTTGAAGTGATTGAGTATTGTTGAT TTGAACTAGTTGTAATCTTTTTTTTGTTTCCTGGTTTTTACAGGTCAATTTGCCATGACTGAACCCTCCAAGGTCATTCA CGTTCGAAACGTGGGGCACGAAATATCTGAAGTACCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGCTTTCTTTCTC TAATGCTGGATGTCTGCCTTGTTTGTATCTATTTGTTTTGATAACATGATCATGTCATGGCTTTGCTAAGGGGCTGGATT GCTTTAGCTTTGTTTTACCTTGAGAAATTGCGGATAAATGCGAGGATTTCTTTCTTTATTGCTGGATGTCTGTTGTTTCT ACCAGTTTGTTTTGGTAACCTGATCATGTCATGGCTTTGCTACGACTCAATTGCTTTAGCTTTGTTTTGAAGTGATTTAT TGCAGTTATGGTTGCCTCGCGGAATTGTGGATCAATGCGGCCTTTTCTTTTTTGTATTGTTGGACGTCTGCATTGTTTGT ACCTGTTTGTTTTGGTAACATGATCATGCCACAGCTTTGCTATGGCTCAAATGCTTTAGCTTTGTTTTAAAATGATTTAA ATTGCGGTTATCTTGCCGAATTGCGGATAAATGGGAGTTTTTCTTTATTTATTGCTGGATGCCTGCTTTATTTCTACCTG TTTGTTTTGGTAACATGATCATGATATGGCTTTGCTACAGCTCAATTGCTTCAGCTATGTTTTTAATTGGTTTAACTTGC GGTTGTGGGCATCTCGTGGAATTGCGGATAAATGCGGGTTTTACTCTATTTATTGCTGGATGTCTGCGTTGTTTCTACCT GTTTGTTTTGGTAACATGATCATTCATGGGTTTGCTATGGCTCAGTCACTTTAGCTTTGATTTGAAGTGATTTAATTTTA AATTGCGGTTGCGGTTACCTCGCGGAATCGTAGATAAATGCCGGTTGATGCGACAGCAATTGCAAGCCCAATGCCGTTGC GTAGACTAAAAAACCCTTTACGCTGCGGCCGCAATTGCGGTTGTTGACCGCCATTTAAAACCCTCAGAACATGATATGGA CCATTAGGGTGGGTGGAAACTACATGTCTCAACCGTACAAATTATAGTAGAAAAATGGTTATTAACTAAAGCTGGAGTTG GATGAGTGTTTGGGTCCATAACTTTAAACCTTTTATTTTTATACTAAAATTTTATTAGAGTCTTTACTTTCTGAAGTTCA TGAAAACCTTCTTTGATTGCAGAATGATTTACTTCAGCTATTTCAACCTTTTGGAGTAATAACAAAGCTTGTGATGCTGC GTGCTAAAAATCAGGTTTTAAAGGCTGTCTGTTTCCCTCAGAATTTTATGGGTTCTTCATTTATCATTTTTTAATTCAAC AATCTGTCTGCCATATTTGCAGGCTCTTCTACAAATGGACGATGTATCTTCTGCAGTTACTGCTATACAGTTTTATGCAA ATATGCAGCCAAGCATAAGGTACAAATAGCTTGTTTTACATGTACGCCTGTCTATTGTTTCGATAACTTGATCTTTGTTA TCATATTCGGAGATCTTAGTGCTCTATTTATTCCCATTGATATTAAAATTTTCCCAACAATAATTATCTTTTTGTTTTAT TCTAGGGGGAGGAATGTTTATGTTCAGTTCTCCTCACATCAAGAACTAACAACAGTAGATCAAAGTCAAGGACGAGGAGA TGAGGTTGGTATTTTCTTGTTCATATTTTGGAATTGAAAAGTGCGTGCTTAATCTTTTTTATTTCTTTCAAAGCCGAGAG AATGAGATATTTCCTCCCTACATCTTTGTTTTGTTATCGCAGACTGTTCCATTTCAGTGGGTTCAGTGTACTAAATTGTT ATTTTGTAGTTTTCTTTTTCTCTATATCATATACTTCTCTATTTATTCTCCTCTCTATCTCTTCTCTTTCTCTATGCTGT CCTGCTGTTGGGAACTCTCTGGATGCACAGCCAAACCGAATTCTCTTAGTTACAATTCATCACATGCTCTATCCTATGAC TGTGGATGTGCTCTATCAAGTATTTTCTCCCCATGGATCTGTGGAGAAGATTGTAACATTTCAGAAGTCAGCTGGTCAGA ATCTCTTAGATTTCTCCCTTTCTCTTCTTTCTTTCCCTATTATTGTTTTTTTTCTGTGCGTTTGGACTTTAACTAACTCC ACCTATGCTTGCATAGCCGGTCCTAAGCCTTTGGCAGCCACCGTAAAACTGGCCGATATCTTTAATATGGTTTGGACAGG GTGGATTGAGGTTATATTTTGGTAATGCAATAATTAAATTTGAAATATGTGTTGAAGTTATAGGACTTTCAGTAAGAAGG GAGGGAATAGAAAAAATAGAGACTTGAATTGTGATTATGGTTTGATGATACAGAACATTAAGTACTATCCCTTATCTATA CTAATACTAGAATCTTAATCTTTACTAAATGAGGAAAAAATCATGAAGTATAAAGAATTTAAGATATTCTAATTTACTCT AGGATACTACCCAAATAATGAGTTATTTTCATATATTTTAAGTCACACCCTCAAGCTAATGTTTACTTTTCTTTAAGTAT GTTACAAATAAACTCTTATAAAGAAAAATATAATATGGGTTCCACAAAACATGGCTGGAAAGGAACATAGGGATGTTGGA GCGCTGAACATTGCTGGAAAGAGAATTCAGCATGATGACTTGAGTGATTATCAACTTGAAAAGGTGGTTGGAATGCTGCA TAACCAAGGAAGAAGAGGTTCCCTAGAATGATCATGTGCAGAAATTTCCTGTCGAGCATTTATATGCAGCAAGAATAAAA CTTCTCCAAATCCACCATGAACAACTTTGGACACTTCAAAGTTTAAACTACAAGACAGTTTACTATAAGTCGATACCAAA AAAATGATATTGCATTTGTTTTTTATGTTTGAAAAGTTATCGTTATATTTTATCTGATTATGTACAGTTAGTGTGTTTTA CTAATTGTTTTATGATATATTGGCAAACCCCATAGGCTTTCAGGCTCTGATCCAGTATCAATCACGTCAGAGTGCTGTTA CTGCTAGAAGTGCACTTCAGGTTGTTTTAACATTTCCTTTCTGCTCGGGGCTTTACATGGCTTGTTAATTCTGATTTTAT TTCTGAATACTGATTGAACTTTTGGTAATTTCTAGGGTCGCAATATTTATGACGGTTGCTGTCAGCTGGACATTCAATTC TCAAAGTAGGTTAAATTAGTCTAAACAATGTCTACATGTATTGGCTTGTGGGTTTATAATTTATCTTATCCTTGTGTTTG AGTTTAATTATTAACTTTCTGTCTATTCCCTTTCTCTCTCTTCTCTTTTCCTTACATTAATTTCTTATATGGACATTTAA TTCATCTTAATTGCAGCCTTGATGAATTACAAGTGAACTACAATAATGACCGTTCAAGGTGATTCAATCACCTTTTTTCT TTGTATTGGTTTACTTTTTTCCTTTCTTTTTACACTCACTGACTTTATTCCGTGTCTTTCTCAGGGACTTCACTAACCCA AATCTCCCTACAGAGCAGAAAGGCAGGCCTTCCCAAGTATGTTGTGTTTGATTCTCAACTTATCTATTTATGAATCATAT CTTCTTATTGATCTTTGTGAAGTCCATTCTAATATACATATTTCTTATTAACTTTCACTTGTCTTACATCATCTTTTGTG AAACAGCCTGGATATGGTGATGGAGGAAACATGTATCCTGCTCAAGGTTCAGGAGCTAGGGGAGGAGGTATTAAATATTT AAACTGCTTTAGTTTGCTTGGTTCTTTTTTCATGTAGCGTGATTTTTAAGTGTACTAATATTTACCCTTTTTCCCTCCTT TCAGGTGGATTTCCACAGGTGAGTATTTTCCACATCAAGTTGAAGTCCTAATTTGAAATTATTATGGCACAGCTGAATAT ATGATGAAGTTAATTTCCTCTTTTATCTTATGAGAAGTAGCATAAGAAATCTGTGATGGTGAATTTCTGATTTTTCTGAT CTTTCTAATATATAAAGGTACAAAACACCGAGCTTGAATGAAGTAGCCACCCAGTTTGAGGATTTTATTTTGATCCTAAA ATATCTTCAATTTAAGGCTTTGCTTTTAAATTGATTTTGTTTTTCAAATTGGTGCTTGATTGGGAGAGCGAGGAACTTGT GTTTTGTGCTTCTTCCCCTTGAACTGTGTGGCATTGTCTTCCATGTTTACCTGATAAAATGGACATGTCACAATTGTATT CCATTTTGTTGACCTGTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATGGAATTGTTAAATTTTTTTTTTTT TGAATTATAGATGGGCAATGCTTCAGCCATTGCAGCTGCCTTTGGGGGAGGTTTGCCTCCTGGGATAACTGGGACAAATG ACAGGTGTACAATTCTCGTATCAAATCTTAATCCTGATGTAAGCTCTTCATCTCGCTTCTTTTACAGAGTTCTATCAACT CTCAGCTTATTTAGCTTGAAATTTCTTTATCTCAGAGAGTAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTACGGG AACATTGTGAGAATTAAACTTCTCCGAAACAAACCAGATCATGCACTTATCCAGATGGGAGATGGTTTCCAAGCTGAACT TGCAGTGCACTTTCTGAAGGTTTGTTTCATTTATACCTTGTTTAACATATATATTGTGATACTAGGTTTTGTAATAACTT CACTGAGGAAAAATATATTGTCTTTTACTTTAGTTATAGTTGTTCCTAGTGATATATCATTGTATATATTATTGATTTAT TTCAGTGGTTTTAGCATGCATACAATGTGAATATTTGACAATTTGTCACAAGTTGGCTTAGTGTTTTTGCACAATTTCAA AACAAAAGAAGGTTTGATAAAAGAAAAATCACATGACATGTATGTTTCTAGCTGTCAGATTTTTTTTCAATCTATATCTA GGTGTCCGATTAATACTTACCATATTTTGACTAAGCTGTTGATGATAAATTTATATGAGTGCATCTTCTTCCTTGAAGAA CTTAATACTCTGTCTTCTGGCATTGTCTCCAACAGTCCATGGAAATTTGTTGGTTGTTCCATTTTCTTGATGCCTTTGTT TTTGTATGTGTTTATTCTGCGGATCTTAGTGTGATAAGGCTTTTGTTGTATGTTTATTCTGAAGATCTTTTTTTCTTTAA ATTGAAATGTTAGGAGTCTGCGCTATTGTTCATTCGTAGTTTTATATTTGTTGATTGGTATGCATTGGTTTTATCGAATG ATTAGTAGTGGTCCTGTTTTCAAGAGGGTAGCACTCAATGTACTGTTGATAAAAGTCATAGTTGCAAATAGTAATATCCT GATGTGACCCACATTGTTTCATGTCATGAAATTTGTATAAACTAAACTTATAATACTTTTAACTGAACTTATTTTTTCAT TTTCTATACTGGGTTGCTAGCAAATCAATCTGTGTACCTTGTTTTCTAGTTCTAAGCTGGCCATAAACATTTTCAACTTT GATATGTAGGGGGCCATATTGTTTGGGAAGCCACTAGAGGTAAACTTCTCCAAGCATGCTACCATAACCCAAGGTGCTGA TACGCACGAGTACTCAAATTCAAATCTCAATCGTTTCAATCGCAATGCTGCTAAAAACTACCGCTACTGTTGCTCCCCAA CGAGAATGATCCATTTATCCACACTCCCTCAAGACGTCACTGAGGAGGAGATTGCGAGCCTTGTTGAGGAGCACGGAACC ATTGTCAACTGCAAAGTGTTTGAGATGAATCAGAAGAAACAGGCTCTGGTTCAGTTTGAGACTGAGGAGCAGGCTACTGA AGCCCTCGTGTGCAAGCATGCCACCTCGCTTTCTGGCTCAGTGATCCGGATCTCCTTTTCCCAGTTACAGAACATTTGAG ACTTTGTTTAAAGGACCAGTGGATTGTTAAGCTTATTAGAGACAAGGATTTTGAATTTGGGAAGAATTTTCTTTTATGCA GATGATGGTCTTCTTCATTATCTTGTAATAGTTTCTTTACTTTCTGATTTGCTGATATTAAGACATGCTATTTGACTTAT CTCCCTTGATCTATTTGTTTTCTCATCTCATTTGCTCTCTTTAGGTTACTAACATAGTTTAGTGTTTTGTTGTGGGAATA TACATTTTGTGATTGTTGATAGGTTGAGTTCTGAAGAATAGGAAGGAGGGGAAATTCACTACCTTCTTATTGCCTTCTTT TGAGTCAAACTTATTATTGCCTATACTTTGATTGTTGTATATGTTTGTAAATTCAGGATAAGTTGGCCTTTCTGTTGTAT TCTCAATCCACATCAAGATTTTCTAGTCCAACTGAGCAAGAAGCCCATATATTTTTTTTTTGAAGTGGCTATTGTTCTCC TCTCTCCTTTTGCAACTACACATCTCTCCCTGTTTCTCCTCTAATATACTTTTAATGTCATGTTTTTATTCTTCCTCCTT CCTCGCATGCATGTGGATTGCGAACTTGTTTACTTTTTCTCCTCCTCGTCCTCCTCCTTCTGACACATTTCTCTACCCGT TTCTTCCCCTCAATCAGCAAGCTGCTTCATCCCTGGTGAGACAATGGAATAAGAAAATTCCAAGTTATGCAATGACAGTT TGTAGACCCACAAAAAGATTACAGGTTTCTTACACAAAAGTAAGATGATGAAAATCTTATTTTGACACTTTAAAATGGGC ACTCCGGTGCATCAAAGCTTATGCTATGTGTGGAGTTTGGGGAAGGGTCCAATCACTTGGTCTATATTGTATGCAGCTAT ACCCTGGTTTTTACACAAGAGTTTGTTTCCAGGATTTGAACGCGTGGTCTCGTCACA
CDS sequence (LotjaGi5g1v0289300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTGAACCCTCCAAGGTCATTCACGTTCGAAACGTGGGGCACGAAATATCTGAAAATGATTTACTTCAGCTATTTCA ACCTTTTGGAGTAATAACAAAGCTTGTGATGCTGCGTGCTAAAAATCAGGCTCTTCTACAAATGGACGATGTATCTTCTG CAGTTACTGCTATACAGTTTTATGCAAATATGCAGCCAAGCATAAGGGGGAGGAATGTTTATGTTCAGTTCTCCTCACAT CAAGAACTAACAACAGTAGATCAAAGTCAAGGACGAGGAGATGAGCCAAACCGAATTCTCTTAGTTACAATTCATCACAT GCTCTATCCTATGACTGTGGATGTGCTCTATCAAGTATTTTCTCCCCATGGATCTGTGGAGAAGATTGTAACATTTCAGA AGTCAGCTGGCTTTCAGGCTCTGATCCAGTATCAATCACGTCAGAGTGCTGTTACTGCTAGAAGTGCACTTCAGGGTCGC AATATTTATGACGGTTGCTGTCAGCTGGACATTCAATTCTCAAACCTTGATGAATTACAAGTGAACTACAATAATGACCG TTCAAGGGACTTCACTAACCCAAATCTCCCTACAGAGCAGAAAGGCAGGCCTTCCCAACCTGGATATGGTGATGGAGGAA ACATGTATCCTGCTCAAGGTTCAGGAGCTAGGGGAGGAGGTGGATTTCCACAGATGGGCAATGCTTCAGCCATTGCAGCT GCCTTTGGGGGAGGTTTGCCTCCTGGGATAACTGGGACAAATGACAGGTGTACAATTCTCGTATCAAATCTTAATCCTGA TAGAGTAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTACGGGAACATTGTGAGAATTAAACTTCTCCGAAACAAAC CAGATCATGCACTTATCCAGATGGGAGATGGTTTCCAAGCTGAACTTGCAGTGCACTTTCTGAAGGGGGCCATATTGTTT GGGAAGCCACTAGAGGTAAACTTCTCCAAGCATGCTACCATAACCCAAGGTGCTGATACGCACGAGTACTCAAATTCAAA TCTCAATCGTTTCAATCGCAATGCTGCTAAAAACTACCGCTACTGTTGCTCCCCAACGAGAATGATCCATTTATCCACAC TCCCTCAAGACGTCACTGAGGAGGAGATTGCGAGCCTTGTTGAGGAGCACGGAACCATTGTCAACTGCAAAGTGTTTGAG ATGAATCAGAAGAAACAGGCTCTGGTTCAGTTTGAGACTGAGGAGCAGGCTACTGAAGCCCTCGTGTGCAAGCATGCCAC CTCGCTTTCTGGCTCAGTGATCCGGATCTCCTTTTCCCAGTTACAGAACATTTGA
Protein sequence (LotjaGi5g1v0289300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMDDVSSAVTAIQFYANMQPSIRGRNVYVQFSSH QELTTVDQSQGRGDEPNRILLVTIHHMLYPMTVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVTARSALQGR NIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPSQPGYGDGGNMYPAQGSGARGGGGFPQMGNASAIAA AFGGGLPPGITGTNDRCTILVSNLNPDRVDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAILF GKPLEVNFSKHATITQGADTHEYSNSNLNRFNRNAAKNYRYCCSPTRMIHLSTLPQDVTEEEIASLVEEHGTIVNCKVFE MNQKKQALVQFETEEQATEALVCKHATSLSGSVIRISFSQLQNI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 91 | 91 | 3.0E-25 | ||
| SUPERFAMILY | 3 | 92 | 90 | 1.88E-20 | ||
| PANTHER | 3 | 444 | 442 | 1.9E-210 | – | |
| PANTHER | 3 | 444 | 442 | 1.9E-210 | – | |
| TIGRFAM | 4 | 440 | 437 | 2.7E-120 | ||
| ProSiteProfiles | 6 | 80 | 75 | 11.401 | ||
| SMART | 7 | 76 | 70 | 3.5E-8 | ||
| Pfam | 9 | 59 | 51 | 1.3E-6 | ||
| Gene3D | 93 | 200 | 108 | 4.9E-35 | ||
| Pfam | 95 | 174 | 80 | 1.2E-21 | ||
| SUPERFAMILY | 96 | 197 | 102 | 1.25E-17 | ||
| SMART | 101 | 170 | 70 | 0.099 | ||
| MobiDBLite | 185 | 202 | 18 | - | – | |
| MobiDBLite | 185 | 227 | 43 | - | – | |
| Pfam | 244 | 342 | 99 | 1.2E-30 | – | |
| SUPERFAMILY | 247 | 338 | 92 | 1.34E-18 | ||
| Gene3D | 251 | 350 | 100 | 2.2E-25 | ||
| ProSiteProfiles | 257 | 331 | 75 | 12.901 | ||
| SMART | 258 | 327 | 70 | 1.3E-12 | ||
| Gene3D | 355 | 444 | 90 | 7.8E-17 | ||
| CDD | 360 | 438 | 79 | 3.70208E-43 | – | |
| SUPERFAMILY | 364 | 442 | 79 | 3.94E-16 | ||
| ProSiteProfiles | 367 | 441 | 75 | 12.168 | ||
| SMART | 368 | 437 | 70 | 9.1E-11 | ||
| Pfam | 372 | 435 | 64 | 1.6E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | MRNA processing | Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. |
Expression pattern of LotjaGi5g1v0289300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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