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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0289300 |
| Transcript ID | LotjaGi5g1v0289300.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polypyrimidine tract-binding-like protein; TAIR: AT1G43190.1 polypyrimidine tract-binding protein 3; Swiss-Prot: sp|Q6ICX4|PTBP3_ARATH Polypyrimidine tract-binding protein homolog 3; TrEMBL-Plants: tr|I1NH38|I1NH38_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0289300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60603471..60610564) extracted from Lotus japonicus Gifu genome v1.2.
ATTACCTTAAAAATTCAAACCAAGGTTATCTCAGAATAATATAAATAATCTCAAACAGAGTTACAAGTGTATATATGTAA CAACAACATAGGGTAAAGTAAATTCATGTGTGCCGCGGCCACTCTGCGATAAAGCTCTCTCTCTCTCTCTCTGGTTTCTC ACTTTCTCTGTCTCTGTCACTCTCTTCCAGGCAAGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGA CCTATCTGATTTTCTGTTCTGAACCAAGTAATGTGCAGGGTGTTTGTTGTACTTTCTTTGCTGAGATGTCAATGATTTAA CGCAGATTTGGGTCTCTGACCTGGAATTTTGACATGCCCTTTTCTCCTTTTGGGGTTTTTTCACTGTTCTTTGTTCTGGG TAGTACCTAGATTCAGGTCTCCAATTGGGTATGCGAGTTTCATCTGAATTTGATTGAATATCGGATAAAAATTGAATCTT TTTGTTTCCCGTTTTTCTTGTTTCTTGATTTATGAATACCCATGATTCTGTTTAATTTGCATTGTGATTTCTTGGTATCT TGATTTAGTCCAATTGGATTTTGAAAGAAAATTGGAATGTGGGTTTTACTTCAGAGTGAAAATTTCCAAGCTTGTTGAAT GTGATCTTTACTTCAGATTGATTCATTTCAGACTAGACAGCTTTGAATTGAACTAGTTTTTTTTATAAGCCTTTGAATTG AACTAGTAAAATGAAAGAGTTGAAGTGATTGAGTATTGTTGATTTGAACTAGTTGTAATCTTTTTTTTGTTTCCTGGTTT TTACAGGTCAATTTGCCATGACTGAACCCTCCAAGGTCATTCACGTTCGAAACGTGGGGCACGAAATATCTGAAGTACCT TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGCTTTCTTTCTCTAATGCTGGATGTCTGCCTTGTTTGTATCTATTTGTT TTGATAACATGATCATGTCATGGCTTTGCTAAGGGGCTGGATTGCTTTAGCTTTGTTTTACCTTGAGAAATTGCGGATAA ATGCGAGGATTTCTTTCTTTATTGCTGGATGTCTGTTGTTTCTACCAGTTTGTTTTGGTAACCTGATCATGTCATGGCTT TGCTACGACTCAATTGCTTTAGCTTTGTTTTGAAGTGATTTATTGCAGTTATGGTTGCCTCGCGGAATTGTGGATCAATG CGGCCTTTTCTTTTTTGTATTGTTGGACGTCTGCATTGTTTGTACCTGTTTGTTTTGGTAACATGATCATGCCACAGCTT TGCTATGGCTCAAATGCTTTAGCTTTGTTTTAAAATGATTTAAATTGCGGTTATCTTGCCGAATTGCGGATAAATGGGAG TTTTTCTTTATTTATTGCTGGATGCCTGCTTTATTTCTACCTGTTTGTTTTGGTAACATGATCATGATATGGCTTTGCTA CAGCTCAATTGCTTCAGCTATGTTTTTAATTGGTTTAACTTGCGGTTGTGGGCATCTCGTGGAATTGCGGATAAATGCGG GTTTTACTCTATTTATTGCTGGATGTCTGCGTTGTTTCTACCTGTTTGTTTTGGTAACATGATCATTCATGGGTTTGCTA TGGCTCAGTCACTTTAGCTTTGATTTGAAGTGATTTAATTTTAAATTGCGGTTGCGGTTACCTCGCGGAATCGTAGATAA ATGCCGGTTGATGCGACAGCAATTGCAAGCCCAATGCCGTTGCGTAGACTAAAAAACCCTTTACGCTGCGGCCGCAATTG CGGTTGTTGACCGCCATTTAAAACCCTCAGAACATGATATGGACCATTAGGGTGGGTGGAAACTACATGTCTCAACCGTA CAAATTATAGTAGAAAAATGGTTATTAACTAAAGCTGGAGTTGGATGAGTGTTTGGGTCCATAACTTTAAACCTTTTATT TTTATACTAAAATTTTATTAGAGTCTTTACTTTCTGAAGTTCATGAAAACCTTCTTTGATTGCAGAATGATTTACTTCAG CTATTTCAACCTTTTGGAGTAATAACAAAGCTTGTGATGCTGCGTGCTAAAAATCAGGTTTTAAAGGCTGTCTGTTTCCC TCAGAATTTTATGGGTTCTTCATTTATCATTTTTTAATTCAACAATCTGTCTGCCATATTTGCAGGCTCTTCTACAAATG GACGATGTATCTTCTGCAGTTACTGCTATACAGTTTTATGCAAATATGCAGCCAAGCATAAGGTACAAATAGCTTGTTTT ACATGTACGCCTGTCTATTGTTTCGATAACTTGATCTTTGTTATCATATTCGGAGATCTTAGTGCTCTATTTATTCCCAT TGATATTAAAATTTTCCCAACAATAATTATCTTTTTGTTTTATTCTAGGGGGAGGAATGTTTATGTTCAGTTCTCCTCAC ATCAAGAACTAACAACAGTAGATCAAAGTCAAGGACGAGGAGATGAGGTTGGTATTTTCTTGTTCATATTTTGGAATTGA AAAGTGCGTGCTTAATCTTTTTTATTTCTTTCAAAGCCGAGAGAATGAGATATTTCCTCCCTACATCTTTGTTTTGTTAT CGCAGACTGTTCCATTTCAGTGGGTTCAGTGTACTAAATTGTTATTTTGTAGTTTTCTTTTTCTCTATATCATATACTTC TCTATTTATTCTCCTCTCTATCTCTTCTCTTTCTCTATGCTGTCCTGCTGTTGGGAACTCTCTGGATGCACAGCCAAACC GAATTCTCTTAGTTACAATTCATCACATGCTCTATCCTATGACTGTGGATGTGCTCTATCAAGTATTTTCTCCCCATGGA TCTGTGGAGAAGATTGTAACATTTCAGAAGTCAGCTGGTCAGAATCTCTTAGATTTCTCCCTTTCTCTTCTTTCTTTCCC TATTATTGTTTTTTTTCTGTGCGTTTGGACTTTAACTAACTCCACCTATGCTTGCATAGCCGGTCCTAAGCCTTTGGCAG CCACCGTAAAACTGGCCGATATCTTTAATATGGTTTGGACAGGGTGGATTGAGGTTATATTTTGGTAATGCAATAATTAA ATTTGAAATATGTGTTGAAGTTATAGGACTTTCAGTAAGAAGGGAGGGAATAGAAAAAATAGAGACTTGAATTGTGATTA TGGTTTGATGATACAGAACATTAAGTACTATCCCTTATCTATACTAATACTAGAATCTTAATCTTTACTAAATGAGGAAA AAATCATGAAGTATAAAGAATTTAAGATATTCTAATTTACTCTAGGATACTACCCAAATAATGAGTTATTTTCATATATT TTAAGTCACACCCTCAAGCTAATGTTTACTTTTCTTTAAGTATGTTACAAATAAACTCTTATAAAGAAAAATATAATATG GGTTCCACAAAACATGGCTGGAAAGGAACATAGGGATGTTGGAGCGCTGAACATTGCTGGAAAGAGAATTCAGCATGATG ACTTGAGTGATTATCAACTTGAAAAGGTGGTTGGAATGCTGCATAACCAAGGAAGAAGAGGTTCCCTAGAATGATCATGT GCAGAAATTTCCTGTCGAGCATTTATATGCAGCAAGAATAAAACTTCTCCAAATCCACCATGAACAACTTTGGACACTTC AAAGTTTAAACTACAAGACAGTTTACTATAAGTCGATACCAAAAAAATGATATTGCATTTGTTTTTTATGTTTGAAAAGT TATCGTTATATTTTATCTGATTATGTACAGTTAGTGTGTTTTACTAATTGTTTTATGATATATTGGCAAACCCCATAGGC TTTCAGGCTCTGATCCAGTATCAATCACGTCAGAGTGCTGTTACTGCTAGAAGTGCACTTCAGGTTGTTTTAACATTTCC TTTCTGCTCGGGGCTTTACATGGCTTGTTAATTCTGATTTTATTTCTGAATACTGATTGAACTTTTGGTAATTTCTAGGG TCGCAATATTTATGACGGTTGCTGTCAGCTGGACATTCAATTCTCAAAGTAGGTTAAATTAGTCTAAACAATGTCTACAT GTATTGGCTTGTGGGTTTATAATTTATCTTATCCTTGTGTTTGAGTTTAATTATTAACTTTCTGTCTATTCCCTTTCTCT CTCTTCTCTTTTCCTTACATTAATTTCTTATATGGACATTTAATTCATCTTAATTGCAGCCTTGATGAATTACAAGTGAA CTACAATAATGACCGTTCAAGGTGATTCAATCACCTTTTTTCTTTGTATTGGTTTACTTTTTTCCTTTCTTTTTACACTC ACTGACTTTATTCCGTGTCTTTCTCAGGGACTTCACTAACCCAAATCTCCCTACAGAGCAGAAAGGCAGGCCTTCCCAAG TATGTTGTGTTTGATTCTCAACTTATCTATTTATGAATCATATCTTCTTATTGATCTTTGTGAAGTCCATTCTAATATAC ATATTTCTTATTAACTTTCACTTGTCTTACATCATCTTTTGTGAAACAGCCTGGATATGGTGATGGAGGAAACATGTATC CTGCTCAAGGTTCAGGAGCTAGGGGAGGAGGTATTAAATATTTAAACTGCTTTAGTTTGCTTGGTTCTTTTTTCATGTAG CGTGATTTTTAAGTGTACTAATATTTACCCTTTTTCCCTCCTTTCAGGTGGATTTCCACAGGTGAGTATTTTCCACATCA AGTTGAAGTCCTAATTTGAAATTATTATGGCACAGCTGAATATATGATGAAGTTAATTTCCTCTTTTATCTTATGAGAAG TAGCATAAGAAATCTGTGATGGTGAATTTCTGATTTTTCTGATCTTTCTAATATATAAAGGTACAAAACACCGAGCTTGA ATGAAGTAGCCACCCAGTTTGAGGATTTTATTTTGATCCTAAAATATCTTCAATTTAAGGCTTTGCTTTTAAATTGATTT TGTTTTTCAAATTGGTGCTTGATTGGGAGAGCGAGGAACTTGTGTTTTGTGCTTCTTCCCCTTGAACTGTGTGGCATTGT CTTCCATGTTTACCTGATAAAATGGACATGTCACAATTGTATTCCATTTTGTTGACCTGTTTTCTTCTTCTTCTTCTTCT TCTTCTTCTTCTTCTTCATGGAATTGTTAAATTTTTTTTTTTTTGAATTATAGATGGGCAATGCTTCAGCCATTGCAGCT GCCTTTGGGGGAGGTTTGCCTCCTGGGATAACTGGGACAAATGACAGGTGTACAATTCTCGTATCAAATCTTAATCCTGA TGTAAGCTCTTCATCTCGCTTCTTTTACAGAGTTCTATCAACTCTCAGCTTATTTAGCTTGAAATTTCTTTATCTCAGAG AGTAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTACGGGAACATTGTGAGAATTAAACTTCTCCGAAACAAACCAG ATCATGCACTTATCCAGATGGGAGATGGTTTCCAAGCTGAACTTGCAGTGCACTTTCTGAAGGTTTGTTTCATTTATACC TTGTTTAACATATATATTGTGATACTAGGTTTTGTAATAACTTCACTGAGGAAAAATATATTGTCTTTTACTTTAGTTAT AGTTGTTCCTAGTGATATATCATTGTATATATTATTGATTTATTTCAGTGGTTTTAGCATGCATACAATGTGAATATTTG ACAATTTGTCACAAGTTGGCTTAGTGTTTTTGCACAATTTCAAAACAAAAGAAGGTTTGATAAAAGAAAAATCACATGAC ATGTATGTTTCTAGCTGTCAGATTTTTTTTCAATCTATATCTAGGTGTCCGATTAATACTTACCATATTTTGACTAAGCT GTTGATGATAAATTTATATGAGTGCATCTTCTTCCTTGAAGAACTTAATACTCTGTCTTCTGGCATTGTCTCCAACAGTC CATGGAAATTTGTTGGTTGTTCCATTTTCTTGATGCCTTTGTTTTTGTATGTGTTTATTCTGCGGATCTTAGTGTGATAA GGCTTTTGTTGTATGTTTATTCTGAAGATCTTTTTTTCTTTAAATTGAAATGTTAGGAGTCTGCGCTATTGTTCATTCGT AGTTTTATATTTGTTGATTGGTATGCATTGGTTTTATCGAATGATTAGTAGTGGTCCTGTTTTCAAGAGGGTAGCACTCA ATGTACTGTTGATAAAAGTCATAGTTGCAAATAGTAATATCCTGATGTGACCCACATTGTTTCATGTCATGAAATTTGTA TAAACTAAACTTATAATACTTTTAACTGAACTTATTTTTTCATTTTCTATACTGGGTTGCTAGCAAATCAATCTGTGTAC CTTGTTTTCTAGTTCTAAGCTGGCCATAAACATTTTCAACTTTGATATGTAGGGGGCCATATTGTTTGGGAAGCCACTAG AGGTAAACTTCTCCAAGCATGCTACCATAACCCAAGGTGCTGATACGCACGAGTACTCAAATTCAAATCTCAATCGTTTC AATCGCAATGCTGCTAAAAACTACCGCTACTGTTGCTCCCCAACGAGAATGATCCATTTATCCACACTCCCTCAAGACGT CACTGAGGAGGAGATTGCGAGCCTTGTTGAGGAGCACGGAACCATTGTCAACTGCAAAGTGTTTGAGATGAATCAGAAGA AACAGGCTCTGGTTCAGTTTGAGACTGAGGAGCAGGCTACTGAAGCCCTCGTGTGCAAGCATGCCACCTCGCTTTCTGGC TCAGTGATCCGGATCTCCTTTTCCCAGTTACAGAACATTTGAGACTTTGTTTAAAGGACCAGTGGATTGTTAAGCTTATT AGAGACAAGGATTTTGAATTTGGGAAGAATTTTCTTTTATGCAGATGATGGTCTTCTTCATTATCTTGTAATAGTTTCTT TACTTTCTGATTTGCTGATATTAAGACATGCTATTTGACTTATCTCCCTTGATCTATTTGTTTTCTCATCTCATTTGCTC TCTTTAGGTTACTAACATAGTTTAGTGTTTTGTTGTGGGAATATACATTTTGTGATTGTTGATAGGTTGAGTTCTGAAGA ATAGGAAGGAGGGGAAATTCACTACCTTCTTATTGCCTTCTTTTGAGTCAAACTTATTATTGCCTATACTTTGATTGTTG TATATGTTTGTAAATTCAGGATAAGTTGGCCTTTCTGTTGTATTCTCAATCCAC
CDS sequence (LotjaGi5g1v0289300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTGAACCCTCCAAGGTCATTCACGTTCGAAACGTGGGGCACGAAATATCTGAAAATGATTTACTTCAGCTATTTCA ACCTTTTGGAGTAATAACAAAGCTTGTGATGCTGCGTGCTAAAAATCAGGCTCTTCTACAAATGGACGATGTATCTTCTG CAGTTACTGCTATACAGTTTTATGCAAATATGCAGCCAAGCATAAGGGGGAGGAATGTTTATGTTCAGTTCTCCTCACAT CAAGAACTAACAACAGTAGATCAAAGTCAAGGACGAGGAGATGAGCCAAACCGAATTCTCTTAGTTACAATTCATCACAT GCTCTATCCTATGACTGTGGATGTGCTCTATCAAGTATTTTCTCCCCATGGATCTGTGGAGAAGATTGTAACATTTCAGA AGTCAGCTGGCTTTCAGGCTCTGATCCAGTATCAATCACGTCAGAGTGCTGTTACTGCTAGAAGTGCACTTCAGGGTCGC AATATTTATGACGGTTGCTGTCAGCTGGACATTCAATTCTCAAACCTTGATGAATTACAAGTGAACTACAATAATGACCG TTCAAGGGACTTCACTAACCCAAATCTCCCTACAGAGCAGAAAGGCAGGCCTTCCCAACCTGGATATGGTGATGGAGGAA ACATGTATCCTGCTCAAGGTTCAGGAGCTAGGGGAGGAGGTGGATTTCCACAGATGGGCAATGCTTCAGCCATTGCAGCT GCCTTTGGGGGAGGTTTGCCTCCTGGGATAACTGGGACAAATGACAGGTGTACAATTCTCGTATCAAATCTTAATCCTGA TAGAGTAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTACGGGAACATTGTGAGAATTAAACTTCTCCGAAACAAAC CAGATCATGCACTTATCCAGATGGGAGATGGTTTCCAAGCTGAACTTGCAGTGCACTTTCTGAAGGGGGCCATATTGTTT GGGAAGCCACTAGAGGTAAACTTCTCCAAGCATGCTACCATAACCCAAGGTGCTGATACGCACGAGTACTCAAATTCAAA TCTCAATCGTTTCAATCGCAATGCTGCTAAAAACTACCGCTACTGTTGCTCCCCAACGAGAATGATCCATTTATCCACAC TCCCTCAAGACGTCACTGAGGAGGAGATTGCGAGCCTTGTTGAGGAGCACGGAACCATTGTCAACTGCAAAGTGTTTGAG ATGAATCAGAAGAAACAGGCTCTGGTTCAGTTTGAGACTGAGGAGCAGGCTACTGAAGCCCTCGTGTGCAAGCATGCCAC CTCGCTTTCTGGCTCAGTGATCCGGATCTCCTTTTCCCAGTTACAGAACATTTGA
Protein sequence (LotjaGi5g1v0289300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMDDVSSAVTAIQFYANMQPSIRGRNVYVQFSSH QELTTVDQSQGRGDEPNRILLVTIHHMLYPMTVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVTARSALQGR NIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPSQPGYGDGGNMYPAQGSGARGGGGFPQMGNASAIAA AFGGGLPPGITGTNDRCTILVSNLNPDRVDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAILF GKPLEVNFSKHATITQGADTHEYSNSNLNRFNRNAAKNYRYCCSPTRMIHLSTLPQDVTEEEIASLVEEHGTIVNCKVFE MNQKKQALVQFETEEQATEALVCKHATSLSGSVIRISFSQLQNI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 91 | 91 | 3.0E-25 | ||
| SUPERFAMILY | 3 | 92 | 90 | 1.88E-20 | ||
| PANTHER | 3 | 444 | 442 | 1.9E-210 | – | |
| PANTHER | 3 | 444 | 442 | 1.9E-210 | – | |
| TIGRFAM | 4 | 440 | 437 | 2.7E-120 | ||
| ProSiteProfiles | 6 | 80 | 75 | 11.401 | ||
| SMART | 7 | 76 | 70 | 3.5E-8 | ||
| Pfam | 9 | 59 | 51 | 1.3E-6 | ||
| Gene3D | 93 | 200 | 108 | 4.9E-35 | ||
| Pfam | 95 | 174 | 80 | 1.2E-21 | ||
| SUPERFAMILY | 96 | 197 | 102 | 1.25E-17 | ||
| SMART | 101 | 170 | 70 | 0.099 | ||
| MobiDBLite | 185 | 202 | 18 | - | – | |
| MobiDBLite | 185 | 227 | 43 | - | – | |
| Pfam | 244 | 342 | 99 | 1.2E-30 | – | |
| SUPERFAMILY | 247 | 338 | 92 | 1.34E-18 | ||
| Gene3D | 251 | 350 | 100 | 2.2E-25 | ||
| ProSiteProfiles | 257 | 331 | 75 | 12.901 | ||
| SMART | 258 | 327 | 70 | 1.3E-12 | ||
| Gene3D | 355 | 444 | 90 | 7.8E-17 | ||
| CDD | 360 | 438 | 79 | 3.70208E-43 | – | |
| SUPERFAMILY | 364 | 442 | 79 | 3.94E-16 | ||
| ProSiteProfiles | 367 | 441 | 75 | 12.168 | ||
| SMART | 368 | 437 | 70 | 9.1E-11 | ||
| Pfam | 372 | 435 | 64 | 1.6E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | MRNA processing | Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. |
Expression pattern of LotjaGi5g1v0289300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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