Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0290000 |
| Transcript ID | LotjaGi5g1v0290000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | UPF0496 protein; TAIR: AT1G20180.2 transmembrane protein (DUF677); Swiss-Prot: sp|A2XCJ1|U496C_ORYSI UPF0496 protein 3; TrEMBL-Plants: tr|I1LDF4|I1LDF4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0290000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60663541..60664930) extracted from Lotus japonicus Gifu genome v1.2.
CTTTGTTATGAAGGACTAAAATTAATTGGGCTACTGAAATTGTTTGATACCTAGATCTCTTTCTTCAAAGTAGTTGAGAA CCAAGTTTGTTCATACAAGACTAGTTCCCATTATCTCTAAAGATAGACCAAGATGTTTTCAAAATTAAAAGCTTGGAAGG CCAACAAAGGTATGTGGTACTTGTTATGACTTCAGTATTGTCTCATTTGGCAATAATCTTCACAACTTGTTTGAATCCAT TGAAATCTAAACAACATGATTGTGAACATCATTGATTAATGATTATGAAATGAAGTTATCATTTTCTGCTCTTAAACTAC AATTTTATTTCATTTTTTTGAAGATGTGATCAAGGAACATAGAGATGCCCCAAAGAGCACCAATATACATGAAGAGTACC ACAGGGCAGTAAGGACAAAATCCTATGCTGATTTCTGCAACAAAGCTCAATTACTTGCAAACCATCCTTCAAAAATCAAG AGATTTTCAGAATTCCTCCTTGAACCTGACCAAGAAACCATACCTTCAATTCTTGATTCAGCAACATTTTCAAACACTCC AGAACTCAAAAACATTATGCTCACCTACTTTGACATCAGTGCTGAGGCTTCACATATTTGCAGCAATCTTCTCAAAGGCA TTAACCAAGTCCACTCTGATTACCAATTCTTTCAGAGGGCATTAGACATTGATGATGGTGACTCTTTGGAAAGTTTTGAA CTAATCATCATTGAGCTAAGCTCATTCATTATCTCAAGTGACCCTTTTTCAAACCTTGAAAACCATGACTTCAAGCTCAT CCATGATAAGCACTCATCAGTGTTGCACCATCTGAAGTCAATGAGAAAAAGGGTAGGAAGGAAAATTAAGCATCTAAAGA GGAAAATTGGAGGCTTTAAATTTTCAGGAAGTGGGTCTTCTCTTAGTAAAGTTTATGATCAGCTTGACATAGCAGCCAAG GGAACTTATATAATGAATAGGGACTTTGATACAATGAGTAGGCTTGTAGCTAGGCTTCAAGATGAAATTGAGCATAGCAG GGCAATGGTGCAATTCTGTTTGGACAGGAAAGAGGACAGAGTTTCTATGCAGATTGTGAAAGAGCTTAAGAAAAGTGATT TTGGGTTCAGGAAGCATGTGGAAGAACTTGAAGAGCATGTGTACTTGTGCCTCGTCACAATTAACAGGGCAAGGGCTTTG GTCATTAAGGAAATGAAAAATTCACGTCCATAATGTGAGGTAGGAAGGTAGACGCTAGACAACGTGTATATAAGATCCTT GTACATATTAAGATTCGTTTCGTGTAAAATTACTTTTTAGATTAGTTATTTTGGTTCTTTATTAGGATCCAAAGTACTTT GTGGATAAATGCATAAATTTTTTAGTCAGT
CDS sequence (LotjaGi5g1v0290000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTTCAAAATTAAAAGCTTGGAAGGCCAACAAAGATGTGATCAAGGAACATAGAGATGCCCCAAAGAGCACCAATAT ACATGAAGAGTACCACAGGGCAGTAAGGACAAAATCCTATGCTGATTTCTGCAACAAAGCTCAATTACTTGCAAACCATC CTTCAAAAATCAAGAGATTTTCAGAATTCCTCCTTGAACCTGACCAAGAAACCATACCTTCAATTCTTGATTCAGCAACA TTTTCAAACACTCCAGAACTCAAAAACATTATGCTCACCTACTTTGACATCAGTGCTGAGGCTTCACATATTTGCAGCAA TCTTCTCAAAGGCATTAACCAAGTCCACTCTGATTACCAATTCTTTCAGAGGGCATTAGACATTGATGATGGTGACTCTT TGGAAAGTTTTGAACTAATCATCATTGAGCTAAGCTCATTCATTATCTCAAGTGACCCTTTTTCAAACCTTGAAAACCAT GACTTCAAGCTCATCCATGATAAGCACTCATCAGTGTTGCACCATCTGAAGTCAATGAGAAAAAGGGTAGGAAGGAAAAT TAAGCATCTAAAGAGGAAAATTGGAGGCTTTAAATTTTCAGGAAGTGGGTCTTCTCTTAGTAAAGTTTATGATCAGCTTG ACATAGCAGCCAAGGGAACTTATATAATGAATAGGGACTTTGATACAATGAGTAGGCTTGTAGCTAGGCTTCAAGATGAA ATTGAGCATAGCAGGGCAATGGTGCAATTCTGTTTGGACAGGAAAGAGGACAGAGTTTCTATGCAGATTGTGAAAGAGCT TAAGAAAAGTGATTTTGGGTTCAGGAAGCATGTGGAAGAACTTGAAGAGCATGTGTACTTGTGCCTCGTCACAATTAACA GGGCAAGGGCTTTGGTCATTAAGGAAATGAAAAATTCACGTCCATAA
Protein sequence (LotjaGi5g1v0290000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSKLKAWKANKDVIKEHRDAPKSTNIHEEYHRAVRTKSYADFCNKAQLLANHPSKIKRFSEFLLEPDQETIPSILDSAT FSNTPELKNIMLTYFDISAEASHICSNLLKGINQVHSDYQFFQRALDIDDGDSLESFELIIIELSSFIISSDPFSNLENH DFKLIHDKHSSVLHHLKSMRKRVGRKIKHLKRKIGGFKFSGSGSSLSKVYDQLDIAAKGTYIMNRDFDTMSRLVARLQDE IEHSRAMVQFCLDRKEDRVSMQIVKELKKSDFGFRKHVEELEEHVYLCLVTINRARALVIKEMKNSRP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 15 | 191 | 177 | 7.7E-116 | – | |
| PANTHER | 15 | 191 | 177 | 7.7E-116 | ||
| Pfam | 55 | 193 | 139 | 7.4E-10 | ||
| PANTHER | 200 | 305 | 106 | 7.7E-116 | – | |
| PANTHER | 200 | 305 | 106 | 7.7E-116 | ||
| Pfam | 217 | 301 | 85 | 3.4E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0290000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…