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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0290800 |
| Transcript ID | LotjaGi5g1v0290800.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tubby-like F-box protein; TAIR: AT1G76900.1 tubby like protein 1; Swiss-Prot: sp|Q75HX5|TLP8_ORYSJ Tubby-like F-box protein 8; TrEMBL-Plants: tr|I1NH23|I1NH23_SOYBN Tubby-like F-box protein; Found in the gene: LotjaGi5g1v0290800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60743324..60745636) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCATTCCGCAGCATAGTTCGTGATGTAAGGGATGGATTTGGAAGCTTATCAAGACGGAGTTTTGATGTAATACTTCC TGGGCATAGCAGGAGCAAGTCACGGAGTTCGGTCCATGAGTTGCACGACCAGCCTCTGGTTATACAGAGCAGTCGATGGG CTAGCCTTCCCCCTGAACTCCTTCGCGATGTAATTAAGAGATTGGAAACAAATGAAAGTGCATGGCCTGGTCGTAAGCAC GTGGTTGCGTGTGCTGCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTCGGCAGTCCTGAATTCTGTGGGAA GATTACTTTCCCTGTTTCCTTAAAGCAGGTGATATATTTTTTATCTTCATCATTCTATCCTAGGTTCAAAAAACACATAA AATGATTACTTCATGTCTAAAGCATATATAAAATTGGTATATGGCTAAATTTTGCACTATTTTGTGCTTGGTTGATTTTT GTTTTACAGCCTGGGTATAGGGATGGGCCAATCCAGTGTTTCATCAAGAGAGACAAATCTAAACTGACATACCATCTCTT CCTTTGTCTTAGTCCCGGTAAGCTTTACTTTGTTGACATATAATTTGAGTTTATCTGCCCATATTGCGTTGTGATTTTTT TTAACCACACAGTGCATTAACTTTGGGCATTTTATGTATGTATTTTCTTTTAACCCTTATGTTTCAGTGTATTTTTCCTT GAATTTTACTGCTGCTAAATTGCATTTGACCTTCATTTCTTTTCAACAAAATGGAGAATTTAGTAGCAATCTGGCATGGT TTTTGACTTGTATAGTATTGACAGGTCTATGACGTATGAATGAAATATACTTAATAAAGTGTAAGCTTTTATGATGGTCT AGTTCTTTGCTGTGCCTTATTTATGAGTTTCTTATGTCGATTTATTGAAGTCCATTACTTTTGGTCACCAAGCTGCTCAT AGAGGGTTGTTGATGTCACTTCTTGCATGCTGTTTACAAGTAGTCATTTCAACTATGTTATAAGCATGCTTTTGACTACA TGTATGTTTATGTTTGTTCTTTTTTTCCTTGTTAGCCAATGCTTTAGTGTGTCTATTACTGTAATTATGAGCAAATAGTC CATGCTCCATAGTCTCCGACTCTCTTCTAATTGGTTTATTGGTTCAATTATTTTCTATGCTGGCATAAGTAGTTCCTTAT TTTGAGTTGAATACTGTGTTGCTATTACTATAGACTATGGATATGCATTTAGCAATCTTATGTTCCTGGCATTCGATATC TTCGGGGGCATGTTTTGAACTCACAACTGTGTTCCTGCAGCCTTGCTTGTTGAAAATGGGAAGTTTCTTCTCTCTGCAAA ACGGACCAGAAGAACGACTTGCACAGAGTACATTATATCAATGGATGCAGATAACATATCGAGATCTAGTAGCACTTACA TTGGAAAATTGAGGTATGACTACTTTGTGTACTCTATTTTCTTGCTGGTTTACACATTCATTTTGTGCTATTAGTCATTG TTTCTACACTTTCCTGTCATTTTGTACTCATACCTTATCAATGTACCCTTGTCTCAGGTCTAATTTTCTTGGCACCAAGT TTATAATTTATGATACTCAGCCTCCCTATAACAATGCTCAGCTATCTCCACCAGGCCGCAGCCGGAGGTTTAACTCGAAA AAGGTTTCCCCGAAGGTCCCTAGCGGCAGCTACAACATCGCCCAGGTCACCTATGAGTTGAACGTCCTCGGTACTAGGGG CCCGCGAAGGATGAATTGTACTATGCACTCAATCCCTGCATCATCCCTTGATCTCGGTGGCTCTGTCCCGGGCAAGCCAG AGCTCCTTCCGCGTGCCCTTGAGGACTCTTTCCGGAGCATATCATTCGCAAGATCAATCGACAACTCAACCGAGTTCAGC AGCGCCAGGTTCTCAGACATAATCGGAGCTGGCAATGAGGAGGAGGAGGAGGAGGGAAAGGAGAGACCCTTGGTTCTTAA GAACAAGTCTCCGAGATGGCATGAACAGCTGCAATGCTGGTGTCTCAACTTCAGGGGCCGAGTGACTGTCGCGTCGGTCA AGAATTTCCAGCTGATTGCTGCAACACAGCCTGCAAGTGGTGGTGGAGCTCCTCCAACAGGAACAGGAGCGGCACCACCA TCTCAGCCACCATCTGACCCTGACAAGATTATTCTTCAGTTCGGGAAGGTTGGCAAGGACATGTTTACAATGGACTATCG GTACCCGCTGTCTGCATTTCAGGCTTTTGCCATTTGCTTGACTAGCTTCGACACAAAATTGGCATGTGAATAG
CDS sequence (LotjaGi5g1v0290800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATTCCGCAGCATAGTTCGTGATGTAAGGGATGGATTTGGAAGCTTATCAAGACGGAGTTTTGATGTAATACTTCC TGGGCATAGCAGGAGCAAGTCACGGAGTTCGGTCCATGAGTTGCACGACCAGCCTCTGGTTATACAGAGCAGTCGATGGG CTAGCCTTCCCCCTGAACTCCTTCGCGATGTAATTAAGAGATTGGAAACAAATGAAAGTGCATGGCCTGGTCGTAAGCAC GTGGTTGCGTGTGCTGCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTCGGCAGTCCTGAATTCTGTGGGAA GATTACTTTCCCTGTTTCCTTAAAGCAGCCTGGGTATAGGGATGGGCCAATCCAGTGTTTCATCAAGAGAGACAAATCTA AACTGACATACCATCTCTTCCTTTGTCTTAGTCCCGCCTTGCTTGTTGAAAATGGGAAGTTTCTTCTCTCTGCAAAACGG ACCAGAAGAACGACTTGCACAGAGTACATTATATCAATGGATGCAGATAACATATCGAGATCTAGTAGCACTTACATTGG AAAATTGAGGTCTAATTTTCTTGGCACCAAGTTTATAATTTATGATACTCAGCCTCCCTATAACAATGCTCAGCTATCTC CACCAGGCCGCAGCCGGAGGTTTAACTCGAAAAAGGTTTCCCCGAAGGTCCCTAGCGGCAGCTACAACATCGCCCAGGTC ACCTATGAGTTGAACGTCCTCGAGCTCCTTCCGCGTGCCCTTGAGGACTCTTTCCGGAGCATATCATTCGCAAGATCAAT CGACAACTCAACCGAGTTCAGCAGCGCCAGGTTCTCAGACATAATCGGAGCTGGCAATGAGGAGGAGGAGGAGGAGGGAA AGGAGAGACCCTTGGTTCTTAAGAACAAGTCTCCGAGATGGCATGAACAGCTGCAATGCTGGTGTCTCAACTTCAGGGGC CGAGTGACTGTCGCGTCGGTCAAGAATTTCCAGCTGATTGCTGCAACACAGCCTGCAAGTGGTGGTGGAGCTCCTCCAAC AGGAACAGGAGCGGCACCACCATCTCAGCCACCATCTGACCCTGACAAGATTATTCTTCAGTTCGGGAAGGTTGGCAAGG ACATGTTTACAATGGACTATCGGTACCCGCTGTCTGCATTTCAGGCTTTTGCCATTTGCTTGACTAGCTTCGACACAAAA TTGGCATGTGAATAG
Protein sequence (LotjaGi5g1v0290800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFRSIVRDVRDGFGSLSRRSFDVILPGHSRSKSRSSVHELHDQPLVIQSSRWASLPPELLRDVIKRLETNESAWPGRKH VVACAAVCKSWREMCKEIVGSPEFCGKITFPVSLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKR TRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFNSKKVSPKVPSGSYNIAQV TYELNVLELLPRALEDSFRSISFARSIDNSTEFSSARFSDIIGAGNEEEEEEGKERPLVLKNKSPRWHEQLQCWCLNFRG RVTVASVKNFQLIAATQPASGGGAPPTGTGAAPPSQPPSDPDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTK LACE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 247 | 247 | 2.3E-226 | – | |
| PANTHER | 1 | 247 | 247 | 2.3E-226 | – | |
| SUPERFAMILY | 48 | 97 | 50 | 2.09E-6 | ||
| Gene3D | 52 | 98 | 47 | 5.6E-6 | – | |
| Pfam | 52 | 105 | 54 | 2.8E-10 | ||
| SUPERFAMILY | 102 | 404 | 303 | 1.28E-92 | ||
| Gene3D | 110 | 404 | 295 | 1.4E-94 | ||
| Pfam | 116 | 399 | 284 | 1.3E-92 | ||
| PRINTS | 169 | 185 | 17 | 7.0E-67 | ||
| PRINTS | 185 | 209 | 25 | 7.0E-67 | ||
| PRINTS | 234 | 261 | 28 | 7.0E-67 | ||
| PANTHER | 249 | 404 | 156 | 2.3E-226 | – | |
| PANTHER | 249 | 404 | 156 | 2.3E-226 | – | |
| PRINTS | 300 | 317 | 18 | 7.0E-67 | ||
| PRINTS | 318 | 334 | 17 | 7.0E-67 | ||
| ProSitePatterns | 318 | 331 | 14 | - | ||
| MobiDBLite | 338 | 361 | 24 | - | – | |
| PRINTS | 361 | 380 | 20 | 7.0E-67 | ||
| PRINTS | 382 | 404 | 23 | 7.0E-67 | ||
| ProSitePatterns | 389 | 404 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0290800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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