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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0290800 |
| Transcript ID | LotjaGi5g1v0290800.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tubby-like F-box protein; TAIR: AT1G76900.1 tubby like protein 1; Swiss-Prot: sp|Q75HX5|TLP8_ORYSJ Tubby-like F-box protein 8; TrEMBL-Plants: tr|G7ICY3|G7ICY3_MEDTR Tubby-like F-box protein; Found in the gene: LotjaGi5g1v0290800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60743324..60745760) extracted from Lotus japonicus Gifu genome v1.2.
CAGCTCTTCACTCTACTAGGATTTGTGAGTTGGTTTTGGCGTCTTCTTAATAACTACTAGAGCATTAATTCTCAAGTGGC TCTGATAATTACTGTGTTCCGGGGCTATCGGTATATTGGAACAAATGTCATTCCGCAGCATAGTTCGTGATGTAAGGGAT GGATTTGGAAGCTTATCAAGACGGAGTTTTGATGTAATACTTCCTGGGCATAGCAGGAGCAAGTCACGGAGTTCGGTCCA TGAGTTGCACGACCAGCCTCTGGTTATACAGAGCAGTCGATGGGCTAGCCTTCCCCCTGAACTCCTTCGCGATGTAATTA AGAGATTGGAAACAAATGAAAGTGCATGGCCTGGTCGTAAGCACGTGGTTGCGTGTGCTGCTGTGTGCAAGTCCTGGAGA GAAATGTGCAAAGAAATTGTCGGCAGTCCTGAATTCTGTGGGAAGATTACTTTCCCTGTTTCCTTAAAGCAGGTGATATA TTTTTTATCTTCATCATTCTATCCTAGGTTCAAAAAACACATAAAATGATTACTTCATGTCTAAAGCATATATAAAATTG GTATATGGCTAAATTTTGCACTATTTTGTGCTTGGTTGATTTTTGTTTTACAGCCTGGGTATAGGGATGGGCCAATCCAG TGTTTCATCAAGAGAGACAAATCTAAACTGACATACCATCTCTTCCTTTGTCTTAGTCCCGGTAAGCTTTACTTTGTTGA CATATAATTTGAGTTTATCTGCCCATATTGCGTTGTGATTTTTTTTAACCACACAGTGCATTAACTTTGGGCATTTTATG TATGTATTTTCTTTTAACCCTTATGTTTCAGTGTATTTTTCCTTGAATTTTACTGCTGCTAAATTGCATTTGACCTTCAT TTCTTTTCAACAAAATGGAGAATTTAGTAGCAATCTGGCATGGTTTTTGACTTGTATAGTATTGACAGGTCTATGACGTA TGAATGAAATATACTTAATAAAGTGTAAGCTTTTATGATGGTCTAGTTCTTTGCTGTGCCTTATTTATGAGTTTCTTATG TCGATTTATTGAAGTCCATTACTTTTGGTCACCAAGCTGCTCATAGAGGGTTGTTGATGTCACTTCTTGCATGCTGTTTA CAAGTAGTCATTTCAACTATGTTATAAGCATGCTTTTGACTACATGTATGTTTATGTTTGTTCTTTTTTTCCTTGTTAGC CAATGCTTTAGTGTGTCTATTACTGTAATTATGAGCAAATAGTCCATGCTCCATAGTCTCCGACTCTCTTCTAATTGGTT TATTGGTTCAATTATTTTCTATGCTGGCATAAGTAGTTCCTTATTTTGAGTTGAATACTGTGTTGCTATTACTATAGACT ATGGATATGCATTTAGCAATCTTATGTTCCTGGCATTCGATATCTTCGGGGGCATGTTTTGAACTCACAACTGTGTTCCT GCAGCCTTGCTTGTTGAAAATGGGAAGTTTCTTCTCTCTGCAAAACGGACCAGAAGAACGACTTGCACAGAGTACATTAT ATCAATGGATGCAGATAACATATCGAGATCTAGTAGCACTTACATTGGAAAATTGAGGTATGACTACTTTGTGTACTCTA TTTTCTTGCTGGTTTACACATTCATTTTGTGCTATTAGTCATTGTTTCTACACTTTCCTGTCATTTTGTACTCATACCTT ATCAATGTACCCTTGTCTCAGGTCTAATTTTCTTGGCACCAAGTTTATAATTTATGATACTCAGCCTCCCTATAACAATG CTCAGCTATCTCCACCAGGCCGCAGCCGGAGGTTTAACTCGAAAAAGGTTTCCCCGAAGGTCCCTAGCGGCAGCTACAAC ATCGCCCAGGTCACCTATGAGTTGAACGTCCTCGGTACTAGGGGCCCGCGAAGGATGAATTGTACTATGCACTCAATCCC TGCATCATCCCTTGATCTCGGTGGCTCTGTCCCGGGCAAGCCAGAGCTCCTTCCGCGTGCCCTTGAGGACTCTTTCCGGA GCATATCATTCGCAAGATCAATCGACAACTCAACCGAGTTCAGCAGCGCCAGGTTCTCAGACATAATCGGAGCTGGCAAT GAGGAGGAGGAGGAGGAGGGAAAGGAGAGACCCTTGGTTCTTAAGAACAAGTCTCCGAGATGGCATGAACAGCTGCAATG CTGGTGTCTCAACTTCAGGGGCCGAGTGACTGTCGCGTCGGTCAAGAATTTCCAGCTGATTGCTGCAACACAGCCTGCAA GTGGTGGTGGAGCTCCTCCAACAGGAACAGGAGCGGCACCACCATCTCAGCCACCATCTGACCCTGACAAGATTATTCTT CAGTTCGGGAAGGTTGGCAAGGACATGTTTACAATGGACTATCGGTACCCGCTGTCTGCATTTCAGGCTTTTGCCATTTG CTTGACTAGCTTCGACACAAAATTGGCATGTGAATAG
CDS sequence (LotjaGi5g1v0290800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATTCCGCAGCATAGTTCGTGATGTAAGGGATGGATTTGGAAGCTTATCAAGACGGAGTTTTGATGTAATACTTCC TGGGCATAGCAGGAGCAAGTCACGGAGTTCGGTCCATGAGTTGCACGACCAGCCTCTGGTTATACAGAGCAGTCGATGGG CTAGCCTTCCCCCTGAACTCCTTCGCGATGTAATTAAGAGATTGGAAACAAATGAAAGTGCATGGCCTGGTCGTAAGCAC GTGGTTGCGTGTGCTGCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTCGGCAGTCCTGAATTCTGTGGGAA GATTACTTTCCCTGTTTCCTTAAAGCAGCCTGGGTATAGGGATGGGCCAATCCAGTGTTTCATCAAGAGAGACAAATCTA AACTGACATACCATCTCTTCCTTTGTCTTAGTCCCGCCTTGCTTGTTGAAAATGGGAAGTTTCTTCTCTCTGCAAAACGG ACCAGAAGAACGACTTGCACAGAGTACATTATATCAATGGATGCAGATAACATATCGAGATCTAGTAGCACTTACATTGG AAAATTGAGGTCTAATTTTCTTGGCACCAAGTTTATAATTTATGATACTCAGCCTCCCTATAACAATGCTCAGCTATCTC CACCAGGCCGCAGCCGGAGGTTTAACTCGAAAAAGGTTTCCCCGAAGGTCCCTAGCGGCAGCTACAACATCGCCCAGGTC ACCTATGAGTTGAACGTCCTCGGTACTAGGGGCCCGCGAAGGATGAATTGTACTATGCACTCAATCCCTGCATCATCCCT TGATCTCGGTGGCTCTGTCCCGGGCAAGCCAGAGCTCCTTCCGCGTGCCCTTGAGGACTCTTTCCGGAGCATATCATTCG CAAGATCAATCGACAACTCAACCGAGTTCAGCAGCGCCAGGTTCTCAGACATAATCGGAGCTGGCAATGAGGAGGAGGAG GAGGAGGGAAAGGAGAGACCCTTGGTTCTTAAGAACAAGTCTCCGAGATGGCATGAACAGCTGCAATGCTGGTGTCTCAA CTTCAGGGGCCGAGTGACTGTCGCGTCGGTCAAGAATTTCCAGCTGATTGCTGCAACACAGCCTGCAAGTGGTGGTGGAG CTCCTCCAACAGGAACAGGAGCGGCACCACCATCTCAGCCACCATCTGACCCTGACAAGATTATTCTTCAGTTCGGGAAG GTTGGCAAGGACATGTTTACAATGGACTATCGGTACCCGCTGTCTGCATTTCAGGCTTTTGCCATTTGCTTGACTAGCTT CGACACAAAATTGGCATGTGAATAG
Protein sequence (LotjaGi5g1v0290800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFRSIVRDVRDGFGSLSRRSFDVILPGHSRSKSRSSVHELHDQPLVIQSSRWASLPPELLRDVIKRLETNESAWPGRKH VVACAAVCKSWREMCKEIVGSPEFCGKITFPVSLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKR TRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFNSKKVSPKVPSGSYNIAQV TYELNVLGTRGPRRMNCTMHSIPASSLDLGGSVPGKPELLPRALEDSFRSISFARSIDNSTEFSSARFSDIIGAGNEEEE EEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPASGGGAPPTGTGAAPPSQPPSDPDKIILQFGK VGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 434 | 434 | 8.0E-251 | – | |
| PANTHER | 1 | 434 | 434 | 8.0E-251 | – | |
| SUPERFAMILY | 48 | 97 | 50 | 2.49E-6 | ||
| Pfam | 52 | 105 | 54 | 3.1E-10 | ||
| Gene3D | 52 | 98 | 47 | 6.2E-6 | – | |
| SUPERFAMILY | 102 | 434 | 333 | 6.8E-102 | ||
| Pfam | 116 | 429 | 314 | 4.9E-100 | ||
| PRINTS | 169 | 185 | 17 | 3.9E-80 | ||
| PRINTS | 185 | 209 | 25 | 3.9E-80 | ||
| PRINTS | 234 | 261 | 28 | 3.9E-80 | ||
| PRINTS | 330 | 347 | 18 | 3.9E-80 | ||
| ProSitePatterns | 348 | 361 | 14 | - | ||
| PRINTS | 348 | 364 | 17 | 3.9E-80 | ||
| MobiDBLite | 368 | 391 | 24 | - | – | |
| PRINTS | 391 | 410 | 20 | 3.9E-80 | ||
| PRINTS | 412 | 434 | 23 | 3.9E-80 | ||
| ProSitePatterns | 419 | 434 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0290800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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