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LotjaGi5g1v0293300.1

Overview

Field Value
Gene ID LotjaGi5g1v0293300
Transcript ID LotjaGi5g1v0293300.1
Lotus japonicus genome version Gifu v1.2
Description RNA-binding family protein; TAIR: AT1G21320.2 nucleic acid/nucleotide binding protein; Swiss-Prot: sp|G7ID19|RBP2_MEDTR RNA-binding protein 2; TrEMBL-Plants: tr|T2DMS5|T2DMS5_PHAVU RNA-binding protein with multiple splicing; Found in the gene: LotjaGi5g1v0293300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:61076536..61080571) extracted from Lotus japonicus Gifu genome v1.2.

AAAAAAACGAAAACGAAAAGAGAGCTCTCGAATTGTTCCTTTCTTCATTCTGCAGGCGAGTCCAGAATTAGGGTTTGGTT TTGTGCAAATTAGGGTTTCTGATCAGCATCTCCTTGTTCACATTCATCTTCATCTCTCGACATGACGGACGGCTACTGGA ATCGGCAGCAGGCGATGTACCCCTCTGCCGGCGGCATACTCAAACGACCGCGTACTGAATACGGTTCGCTCTTATCTCTT TTTCTCTGCTTTTTGTTTCGACACTTCATAAATTTGAGGCAATTTGTGTTTGGCTTTTCAAAGTTTGGATTTTGCAGCTA GGCTTGTTAGGGTTTCATAATTTTTTGATTGTGGGCATGCCTTTATGTTCTTGAACTTTTAAATTCAGTGTTTGATGTTA TAATTGAGTAAGGATATGGATGCTGTTGCTGGGGTTTTTGGGTATATCATAGGGAAAGGGAAGTCTTTTTATGATTTTGG GCAAATTGGTTTTAATTTGAGCAACAGTCAACACTGACTGAGTGATAGATAGCTTTGAGAAGATTAAAGTTCAACTCTAA AATTGTCACCCATACATATATTAAGTTACTTTACCATCCTATGTTATAAATTCTGAAAATCCTTTTGCTAGCATGTATTA TGTATATATACACTATACAGGGTGTCATAATTTAGTTTTTGGTTGAACTCAATGGCATAGTGTGATCCATATAGCCGACC TCACTTAGCGAGATAAGGCTTTTGTTGTTGTTGTTGTATATATACAGGGGTGGAACTAGAATTACAGTTTTGGTGAATAA ATGTATTTTTTTTGGAAGGGCCAAAACTATATATTTCCTACATGGGTGAATTTTTTAGGAGTAGTATTTAAAATTTCCCT CCCCCAATCAACAAGATAGGTCCATATCTCTCAATTCTGTACTTATATGGATGTGGTAAGTTTTTTTTTTTTGCTTTGAT GATCATAGCTTCCCACGTTGGGGCATTTTCAACTCAATTGCATATATATGCACTGAGCGGGTAAAGGGTTGATAGGTGAA CATATCATCATTCTGTTTTGTGCATGCAATCTGGGTAGAATACTTAGAAAACTTAAAAAGGACCTAATCAAAATTTGGGT CAAATGGAGACCTCAGCTACCCTGAATCTTTTCTGTTTTTTTTTTGTGTGACATGAATCTTTTTCTCAGTGATGTGATGG GGATATTGGCAGTGAATATTATGAGCTTTTTAAGGTTGATAAGAAGCATTGGCAGGGTGGAGTAATCTGCTGAAAGCTTA CAGCTCTGGTCGAACATGAGGGTTTAACAGTTGACCTGGTAGAATTTTGATTACAACCATCACTAGTGGCTCCCATTTTA TCAGTTGAACGAGAATCGTGAGAACTGTCCACAGAAGTGTAGTGGATCTTTAGGAGTTTTCCCTTGCCCCACCCTCGAGG ACAAGGTGGATCTTTGAGGGTAGGGTACTCGTAGGAACTAGACCTCTTAAGGAGATGCTTTTTGTAATTAAGTAGCCAAT AGTTATAGTTAGCAGAATGGATAGTTAGTTATAGGGAGTGGGTTAAAAAGAGAATGGTGTAAGGCTATTATAAATAAGAG GGAGAAGGATTAAGGAGGGTATCAAGATTGTAATTAGGGAATTTTAGGGAGAGTACTGGTTCTCTCGAACAATCAGTAAC CGTTGTAGTACTAGTAGTTCATTTTTAATGTGTTTTTCAACTTTTATTTTGTATACTGTGAATAAAAGGAAACTCTTAAT GTGTTTTTCAACTTCAGTTATTTTTGCTGAAGCATGTTGTGATACTAGATTTTGTTACATTGCAGATATGTCACCTTCGG GTCTTACTTCAGCTAATGACATGCATAATTTTATTTCACGAGATAATGACCGTACTGGTCACCAGGGGATAAAGGACACA AAAACTCTTGGGTCTGCTTATGACCGCTACCTTCAGAGTGCGGGGGTAACGTATTTACCAATATATATAATGTGTGTGCC TGCGTGCTTTCTTTGTTTGCTAAAAGTGTTCAACGTGTTTTGTTTTGAAGCAGCTTACTTCATTTAATTCTGGGGAAGCC AGCACAATTGGTGGTGTTGGATTGGGAAGGGGTGTTGGTGGGTTGCCAGGCCATTCACTAGGTGATCCTGCGGTCATGGG GCATCTGGGTGGTGGTGGCCATGATCTTGCACGAAATGGACGGAATGCCAATTACGGCGGTCAGTTACCAGTAGATGCAG TTTCCAGGCCTGGACCTGAAACAGTTCCTCTACCTCCAGATGCTTCGAGTACTTTATATGTTGAAGGTCTTCCATCGGAC TGCACAAAAAGGGAAGTGGCCCGTATCCTTTTTGTTCTGAGATACGCTTTAGGAGTTGTACCATCATGATTTTATCTGTC TCCTGAGCTTCATTCCTTTTAACTCAGTTATTTAGGTTCCTCAATGTGATCTTTAGATATTTTTCGCCCTTTTGTTGGAT ATAGAGAAGTGAGACTTGTGACCAAAGAATCCAAACATGTAAGTGCGCCATTCATAACAGTTGTGCTTGTCCACCTTTGA CATGGTTTGTCATTGCTCTGGTTATTGGTTGAAAGTTCCATTGTCCTATCTTAATGGTGAAATGCTTGTTTATTGCAGCG AGGTGGAGATCCTTTAATCCTTTGTTTTGTAGATTTTGCTAATCCGGCTTGTGCAGCAACTGCTTTGAGTGCCTTACAAG GTATAACTTATAACTTGCTGACTTAAGGAAATCGATTTCATGTTTTAGTTGTGGAAGTCATTTAATAAAGAATCATATCA CCATGTTGAAGACTGCCCTTTGGATGTGGTTATTAAGTCATAATGAATTTTCGATGTTTATAAGCAAGTGCATCAGTATG ATATTCTTTATCTAACTCAATTTGCTGAACTAAAAGGATTTCAACATGGAAAGTTTTTAATTGCTCTGTTATGCTGAATG TCTATATGTAAGTTACCTGTGATGTAAAGGTTTGTTCAAATGAGTGCCAATGAGTACCCACATCCATGGTTCTATTGGTT ATTTTATCATTCAAAGTACTTAATGAACACACACCAAGATATCTATTCTGTTCTATTAACTATCATCATCACTTCTGAAG TTGTTATTGTTCTGCACTCTTGTTGTGTACGTCTTCTTTGTACTAATGACCATCACTGGGAGTGTGTTTTCTCTAATAAA AGTTTGACATTTTCACCATCAGTGTCACCAGTATCATGATTTATTTCTGGAAGTCACCTAAGTAAGCTCCAAAGTTCTGC AATAGTCAGCCGTGCATGTCGTTGGCAAACTAATGACCATGCTTCTGAGTATCTTAGTCACTCAAACTTATAGGATTTTT GAACTCGATGATGTATTCACATATTTATGTACCCAAATTTCATTATGTTTGCTGACATTATGGTTGGATGGCACAGGTTA TAAAGTTGATGAACTCAGTCCTGAGTCTAGTCACTTGCGGCTTCAGTTTTCTCGGTTTCCCGGTCCCAGAAGTGGAGCTG GACCTCGTGGCAAGAGGTGAGCTGATTCACCTTAGGGCGTTTTGGTTATACATAGGGTTGGTGTGCACTATGTGCAAATT TAGTCTCTCCTAGCTAGAATCCTAGTTAGAGCTCGTGAGGTGCACATAGTATTAACGAGCTGAGATCAAACTACTATTGC ATTTGAGAAAATGTAACACATGGGCATTTTTGGGATGGTCACTGCTGTTGATTGTGTTGTATCAATGTTGGTAATTTTAA TATGAATCTGATGTCTTATTTCTAGTAGCGTTTGCTTTTTTGTTGCCAAAATGTTACATGATATCTCGGTCCATAGCTAA AAAAATTGGTAATCTGATTGCTATTGAGATTGATATGGAGAAGCATATTCTCTGTTTCTCTTCCACAGCCTACAGCTATT TTCCTTGGTGAGATAGGTCATAGGTATAATAATTTAGGGAAAAAATTGCTCCAATAATCTTATTTTCCCTCAAGAGATGC AAATCCGTCTTCATACATAAGAGACTTTTTGGACGC
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0293300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACGGACGGCTACTGGAATCGGCAGCAGGCGATGTACCCCTCTGCCGGCGGCATACTCAAACGACCGCGTACTGAATA CGATATGTCACCTTCGGGTCTTACTTCAGCTAATGACATGCATAATTTTATTTCACGAGATAATGACCGTACTGGTCACC AGGGGATAAAGGACACAAAAACTCTTGGGTCTGCTTATGACCGCTACCTTCAGAGTGCGGGGCTTACTTCATTTAATTCT GGGGAAGCCAGCACAATTGGTGGTGTTGGATTGGGAAGGGGTGTTGGTGGGTTGCCAGGCCATTCACTAGGTGATCCTGC GGTCATGGGGCATCTGGGTGGTGGTGGCCATGATCTTGCACGAAATGGACGGAATGCCAATTACGGCGGTCAGTTACCAG TAGATGCAGTTTCCAGGCCTGGACCTGAAACAGTTCCTCTACCTCCAGATGCTTCGAGTACTTTATATGTTGAAGGTCTT CCATCGGACTGCACAAAAAGGGAAGTGGCCCATATTTTTCGCCCTTTTGTTGGATATAGAGAAGTGAGACTTGTGACCAA AGAATCCAAACATCGAGGTGGAGATCCTTTAATCCTTTGTTTTGTAGATTTTGCTAATCCGGCTTGTGCAGCAACTGCTT TGAGTGCCTTACAAGGTTATAAAGTTGATGAACTCAGTCCTGAGTCTAGTCACTTGCGGCTTCAGTTTTCTCGGTTTCCC GGTCCCAGAAGTGGAGCTGGACCTCGTGGCAAGAGGTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0293300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTDGYWNRQQAMYPSAGGILKRPRTEYDMSPSGLTSANDMHNFISRDNDRTGHQGIKDTKTLGSAYDRYLQSAGLTSFNS GEASTIGGVGLGRGVGGLPGHSLGDPAVMGHLGGGGHDLARNGRNANYGGQLPVDAVSRPGPETVPLPPDASSTLYVEGL PSDCTKREVAHIFRPFVGYREVRLVTKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDELSPESSHLRLQFSRFP GPRSGAGPRGKR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10501
2 252 251 7.3E-122 –
PANTHER
PTHR10501:SF53
2 252 251 7.3E-122 –
SUPERFAMILY
SSF54928
129 247 119 9.4E-16
IPR035979
Gene3D
G3DSA:3.30.70.330
147 241 95 2.1E-18
IPR012677
CDD
cd12420
153 235 83 2.28363E-37 –
ProSiteProfiles
PS50102
153 239 87 11.793
IPR000504
SMART
SM00360
154 228 75 6.1E-7
IPR000504
Pfam
PF00076
155 223 69 2.5E-11
IPR000504

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0293300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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