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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0298600 |
| Transcript ID | LotjaGi5g1v0298600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | C2H2-like zinc finger protein, putative; TAIR: AT4G25610.1 C2H2-like zinc finger protein; Swiss-Prot: sp|Q3KSS5|BRRF2_EBVG Tegument protein BRRF2; TrEMBL-Plants: tr|K7N3T0|K7N3T0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0298600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:61531964..61539231) extracted from Lotus japonicus Gifu genome v1.2.
GTTCCATGCTTTTGCCGTTGTTTGTTTCTTTCTTGTGAGAAACGCTTTTCGCCCTACTGCTGCAGCTTCTAGCCTGCACT GGGGCTCCATTTTCTCGCCGTTTCTCGGCGATTTTCCTTCCATCCAAACACCTTCAATCCCCTCGCCACCGCCGCTTGCA GCTCGTTCCGTTCCGGATCGTCAGGAAATCTCTCCGGTCTCCGAGCGATCTCGCCGTCCTTCTTCCTCTCTCGTACGTGA TCTGGTATCACTCTACTCTACTCTCTCTTACTCGATCTAGATCACGCTCTTCGTTAATGTTCTACTGTTGTTTCGATTTT TCTGTAAAATCAATCTATCTTTCAGTGTTTGATTAGCTTTCGTTATTGTTATTGGAGAGATCGCGTTTGCTGTGGTTGAT TATCGTGTTTGTTTGATTGAATCTCAATGTAATTGGTTTAGTCGTGGTTATCGAATGCTGAGAATGTTGAATGCATGAAT CTGAACTTCGACATTGCTTATGGAGTGACCTAATTGGATTGAAGTTTAATTTCTACATTGATCAATTCAATTGTACTCTT GTTGAGTTTGGATACGTTTTTTGTTTTTTCTCAGGGAGTTAATTTGTTGAGTCTTGAGAGATTCAGTGTTCAATTTTATG TGTCTGTATATTTTTGTGTTGTTTTATTAGTTCTTTCGAAATTCGATGTGTTGAATGTGTGTGAGTTCCATCTTCTTTCA CTTTTATGTGAATTTGAATTGATTTGTTGTGTTACGTTTTGTGCAGTGGGAACTTGTGATATTTCTTGTCTGAATAGATG CCAGTTGCGCAACCTACTGCTGCCTCTGGCACTCTCGATGTCATGAAAACAGAAGATGGAAAAGATTCTGTTGATACTTT AGTCAAACAAGCAAATGGATTGGAGCCTGTCCTTTACTATCCCAGGATCGGTGAGAGCTCAGTACAATGGCTGCAATTTC TTCAAGCTCTAGAACAGCCAGGTATTTGCTATTATTTTAGATGTTATATTTGAGGGTTTATTTTCAAAGGCATTTAGGTA ATATCGATTTGTATGAATTTGACTTTATTGGGTAAAGGACTGTTTTAGCCAAGTGATTGTATCATAGTTAGCATATCCTT CCTGATCACTGCTTGGAGCTGCTGACTCCTGAGTCGCCATAGTGAGATAGCAGGTGGTGAGATGAGCATTATAAATACAA GATGAATAATTTATACTACACATTTCATGAAGCTGTCATGTATGAAGTCAGTGTGCTCTCCAAGCAGTGCAACTGCTGTA TTGCACCATTAATATCTAGGGAATACATGTAGCAGAAGGAAGCACAAACACTTCAAAGTGGCTTCTTTATACATGTTGGA CTCATGTCAGACACTTATTCGTTTCGAACATTTCAGATACTTCATTGTGTTATAAATTTTTTCCTTCTTTTTTTTCAACT TTTATTTATGATAACATTTTCCATATCTACAATGAGTCATGCTAACTTTTAAAACACGGAATCTCTCATTTGATTTAAAA TTTATGTTTGTGTATTAATTTTAAACTGATTTTGTGTTTTATTATAGTTTGTAGTTTGTGCCCCAAGTCATATCTGTGCT TTCTAGATGTAGCCTACCTTAAACAGTAAATTTGAAAATAATGAAAAACAACTTGCTATTAAAATCTCTACTGTTGCCTT TTGTGCTGGTCTATTCAATGCTAGAATATTTATGTGCAAAATGCATCATAAGTAGCTTTTAAGCTCTTGCTTCTTGTGTG CCCAAATCTAAACTCAAATATTCTGATTTAATCTATCATTCATTTGACAGAACCAATATGGCCTTTGTTATCTGTTGTGA CAAAAGTTCAGTTACGGAAGTGCGAGAAGTGTTCTCGAGAGTTTTGCTCTCCCATTAACTATAGAAGACATCTGCGGATA GACCATCGGTTGAAAAAGCTGGATAAGGTTGTTGTTATGTCACTTAAATTGAAGCAGTCATCTTCCATGTTGTTGCCCTT ATTTCATGCTTTTGTACCTTGAGTTTGTCTTGTTTATTTCTTTTTCATTTCTTCTTCAGTTTTTCCTAATGCTGCTTACA TATTGTAGGACTCTATAAACAATAGGGATCTTTTGGGGGAATATTGGGATAAGGTAATCTTTCATCATTATGAATTTTGC TTATATGAATACATATTGCTTGTGTCTTTGTGGATGTGCTGATTTTTCATATTTTGTATAGCTCTCTGTGGAAGAGGCAA TGGAAGTTGTGTCATTCGAGGATATGTTGCTGGAGGTATCTTTTTTCTCCTTAAATGACCAGTTATTTCTACATGAAGTC ATTTTAATGTGATTTACCTAACACGTACTGGTGATATCAGATATGTCAAATATATTATACTATGATTAAAATTAATGAAT GTGGGAGAAGCTGAGTGACATGAAGCCTCTCCAATCTGCTTATTCACACTGACTTTAATTACGATAAGCCCTGGTTGGGC CTTATTTTAAGGCTTTGGAGACATTACATTCTTTCATAAATATGCTCATTCAATTATGCTTTAGTTTCTTATCTTGTATT TTGTATCACTGTCAAAGTTCTTTCTAATTACCGTATTTTGCCAAAAGAAATTGACTCCGTTTGTTGAAATGGTGTAGGTG CCTTTTTAAATGTGAATATGATTTTTAAAACCTTTTGGTGTTATGCTTAATTGATAAGAAATAAAGCTACAAATACAAAG ACAACAATCTCTTTTGGTTTCTCTTCTTTTCTTCTCTTATTGTTTTCCACTTTTCCTAATAAACATATCTATCTTGTATT CGATTTTCCCCAATGGCAGGAAGTTCCAGGGTCTTCAATTTTAAAAGGTGTGGCAAATCTTAGAAGACAAGCATTTTCTT CTCTTCCACAAAATTATATGAGGGCTGGTTTTTCCCTTTTGGTAAGAAATATTGTGATCTTGCTGATGAACTATTCATTC TGGTCATATTTTGGTTGGTTTTATTCATGTAATATATCTAAATTATTTGCAGGATATGGTTCAATCCAATCCTTCTAGTT TTCCTATATCTTCTCAAGAGTTGTTCAGTATCCTCGACGATGCCAGTGAAGAAACATTTTTATGTGGAACAGCAGTGTCA GTGCAAAGATTTATGTTTGATGGAGAGGCTGGAAAGATTGTCCTTGAACCAAGAAACCTGATTGCTTGCACAAGTTTCTT GCTAGAGCAGAAATTGGTAAATGTTCTTCCTAAGATTAAAATCTTCTGCTTACCTGTAAACTTCTCTTTCTGTCCTCTCT CTCTCTCTTGTGGCGGTGCTTTTGGTATTTGGCGATAAAAGATGTTTCTCATATACACTATGTTTCACCCAGATATACCT GAGATGTACATAAATCTTGTATAATCATTATATTTTTAGCCTATGGTATTGGATGTGTGGTTTGCTATTCCACAGTTTTT GCCAGGTTTCCCTCTTGTGTGGGGGAGTTTGGGGGTTTGCTCTGATGTGATTTTATTTTATGTGTATCTATAAGTTAGGT TGATTTAAATCAAACCATGGGAAAAAATCTTGCTTTCATTTGCGGTTAATTTGTAACCTTCACAAAATAGCTTAACTTTC AGAAGTGTTGGTATTAAGAAAATCCTTTTCCGTACGAGTGCATTCATCACTTATAGCTAATGTTAGCCATGAAAAAACTG CTATTTAACCAGATTCCATTCTGCATTATTGTTTATAAGGGAGATAAGATCAGTCTCACTATCACTCTACCCTTTTACTT CACTGGGAAGATAGTTCCCACTAAAATCATGTTTTGCTGTGCTGCTCTTGAAATATTTTTCGTGGAAATGATCTAAAAGA TTGTGTTGAAGTTTCATTGCATGTCCTGTTTATACATATACAAGCACCAGTTATGATTCTATTATTACTAACCTACAAAG CATGATTAAGTAGTCAATATTTACTGTCATGATGAAATATGCATTTCTTTTCACATAGGTGAAGGCATGTCTTGCTTACA AGGAGGCTGAAGCATTGAGATTGCAGCAGCTGCTGGTGGATGAGGAGGAAGCTGCTCAGAAAAGGTACATTTAGTGCTGT AACTGGTTCGTCCTTGATTTATCCTGTTATGTTACTTCTCCAATACTTCCCTTTTTCTAATACCTTAAGACATCAGGCAA TTTTGGTCTTCCCTTAGTAATTATCGAGTTCCATTCCAAATTGGGTTGAGTTTGATTTACAAGAATATATTTGTCTTCAA TTTGAATGCTTGTCATTGAAATTTAGGACTTCGAGTGGAACCCTAACATAACCTTTTCTTGTTATTTTTAATATCTTAAA TAAGGGAATTCATATAGCCGTTGTTCAGTTAAGAAAATAAAAGCTAAAGAACCTGTACCGTAAAAAAATACAAGGTAGTT AAAATCGGGATTTTACCATAAATGAGCATGGGAGTGAAAATTGTATATCTTAAAATTGTAAATTGATTAGTAAGATTTTT CAAAATTCATATATAATATGTACATGCATTTAAACTCATATTTATATGCATATAAATTAGCATAAATAAGGAAAAAATGT TTAAATCACTAAACACACTTTCATAAATTTGCACTCATAAATCATAATTGATAATCCACATTCCACAAGAATGTCATGCA TAAGCCATTAAGTCATTAAATACTTAACCACTTGAAACATAAAATATAACACCCAATAACCCAAAGCACCCGACAACCAA TAGCGGCTACTTAGTTTCATAAACCATATGCCCTTGTGTCATGAGAGAAATGAATTTCCAATGGATTAACAAGAATCCGA TTCTAAGATCGGGGGTTATAGTCAAACAGCATAACCCAGAGGATAGTTTTAACAAATTTGAGCTGTTCAACTGCACAGAT AGAACTTCATAATGCTACAAATTTTGCCATATTTACCAGCTGACCTGCTTGATAGTTTTATGAGTATCTAGACTATACTA AAAATTAACATGATGCCTATACAATGACTTCCATTTTATTTTCTTTGATTTCAGATGGATTTTCTATTGACCTCTGTAAC TGCTGATGTGCTATTATAAAAAAACTATGCTACTCTATTCTAATTTTTTGTGTAGTTAGTGAAATGATATTTGTTCCTCT TTCATATAGAATATCCAAAAGGTACCAAAAGATGTCGGTCAATATGTACTCTCATGTGAACTAGTCGTGTATGTCAATAG GGTTCTTTATTTAATTGTTACCTCTGTTTACAGACAAGCCGAGATTTTAGAGAGGAAGCGCAAGAAGAAGCTTAGACAGA AAGAACAGAAGGCTAGGGAACGACTTGAAGATGACATGAAAATTGACGGAAACATCAGCAGCACAGGAGAGGATATGTCG CCAGCAGAAGCATCTTTGGCTGCATTTGACTTTGAAGCACATAATCCAGATATACCTGCTGATCACGATTCTTCAACACA TGTAACTTACCAATGCCCAGACACTACTGAAGGTGTAGACGGGGAAACACAGCCAGGGAATGATTATGACCCTGATCAGA TTATAGAGCAACAAACATCACAAGGACATAATCGCCTGCTTCCAATGACTGCCAGACAGCAAGAGCTGCCTAAATCACAG GCGCCTGTAGCCAATGGTTTGTGTGCTAGCCAGAATTCTCAAATGTCAAAGCTTGGAGCCATTCAAAAATATGGAACCAA CTGTGATCAGAATGCAGCTCCTATAGTTAACGGTGGTGAAGTTGTGAGCTTGAAGCCTGAACCAAAAACTACTGGGGTGG TTTCAGAAGCCAGGCTGCATAAAGAACCATATGTAAGAAAGAATCATGAAGTTCTGATTGGTTCTGTATCTGTAACACTG GCCAATTGCAGCCAGTCAGAGGGGAGTCTTGTGCCATCTCGAGGGGTCTGCCCGGCAGAGAATCTGGCGAAGCAGAATAC TGCTCAGGAGAAGCCAATAAAACTTGATTGCTTCCAGGGAGGCGAGGGCAGTTTGGCCAATTGCAGCCAGTCAGAGGGGA CTCTTGTGGCATCTCGAGGGGTCTGCCCGGCAGAGAATCTGGCGAAGCAGAATACTGCTCAGGAGAAGCCAATTAAACTT GATTGCTTCCAGGGAGGCGAGGGCAGTTTGGCCAATTGCAGCCAGTCAGAGGGGACTCTTGTGGCATCTCGAGGGGTCTG CCCGGCAGAGAATCTGGCGAAGCAGAATACTGCTCAGGAGAAGCCAATAAAACTTGATTGCTTCCAGGGAGGCGAGGGCA GTTTAACACCGGTTAATCAGCATGAAAGTAAAGGTCCACTGCCACCTCAAAATGGTGGGGCAATAGCTGAGGTAGTAGAT GGAAAAGACGGTCAGAACAGTTTAACATTGTGTAATATAGATGATAATGGTTTGAAGAGCAAGTTTTCCCAAACTGGGGC TAAAGGGGATCGGGAAAGGTTACAGTTCTCCAGCCATGCTGCAAGAGCTTTTCTTGATCAAAGTAAGTTTTGCCAATTTC TGCATTTTCATCTTTCTTCTATTATACTGTACTGACAGTATGTTGGGCTTGGTGTTTAACTTCTTTGATCTGATTACAAT TAATCTCATTCAGGATGGAAAGAAGCCATCTCATCAGACCATGTGAAACTGGTCCTTTCTCCAGATACTACATCTCAGCA CAACCAGGATTGCGAAGTAGCACCATGCCTTCCTGCAAATACGGAGAAACCGTTGCCTGCAGCTTCTGGAGGTCCTAAAT CCAAACACAGAAAGAAGCCTGGGAAGGAAATGAAGACAAAGTACATTCCCAAGCAAAAACCAACAGCAGCATAGTAAGAA GAAATTAGATGATTTAATTATGACAGATATACAGTTTAATTTGCTAGCAGAGGCTCCAGTTTTACAGATGGTCTTCTGTC AGATACCTGAAGGTAGGTTTTGCCGGAAGTCTTCTTATATTCGGTCCTTTTCCTTCACATAGGGGATTGTGCAGTCAGTT AAAATTTTGTTGTGCGTTTATTAGCGAAATTGTGTAATAATTAATAAACTTGTCTAGTTATTAGTTATTACTATAGAGAG AAATACTTAAACTACACCATGTTTTTCGGAAATCAATGAGACAGAAGTACAGGGATTCCTTTTTAAGTTTTGGTACAAAG GGCGTGTTTGTTATATTAGCAAACAATTTTGCTAGTATTCCCCCTCTTTTTGGCGTAATTATCAAATTTAGAGCGCGCTT GCTTAAGGTTTTAAACAAAAGGTTTTTAGCTCTCGAAAAAAGACTTTTTAAGAGATTTTTATGAAAAG
CDS sequence (LotjaGi5g1v0298600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAGTTGCGCAACCTACTGCTGCCTCTGGCACTCTCGATGTCATGAAAACAGAAGATGGAAAAGATTCTGTTGATAC TTTAGTCAAACAAGCAAATGGATTGGAGCCTGTCCTTTACTATCCCAGGATCGGTGAGAGCTCAGTACAATGGCTGCAAT TTCTTCAAGCTCTAGAACAGCCAGAACCAATATGGCCTTTGTTATCTGTTGTGACAAAAGTTCAGTTACGGAAGTGCGAG AAGTGTTCTCGAGAGTTTTGCTCTCCCATTAACTATAGAAGACATCTGCGGATAGACCATCGGTTGAAAAAGCTGGATAA GGACTCTATAAACAATAGGGATCTTTTGGGGGAATATTGGGATAAGCTCTCTGTGGAAGAGGCAATGGAAGTTGTGTCAT TCGAGGATATGTTGCTGGAGGAAGTTCCAGGGTCTTCAATTTTAAAAGGTGTGGCAAATCTTAGAAGACAAGCATTTTCT TCTCTTCCACAAAATTATATGAGGGCTGGTTTTTCCCTTTTGGATATGGTTCAATCCAATCCTTCTAGTTTTCCTATATC TTCTCAAGAGTTGTTCAGTATCCTCGACGATGCCAGTGAAGAAACATTTTTATGTGGAACAGCAGTGTCAGTGCAAAGAT TTATGTTTGATGGAGAGGCTGGAAAGATTGTCCTTGAACCAAGAAACCTGATTGCTTGCACAAGTTTCTTGCTAGAGCAG AAATTGGTGAAGGCATGTCTTGCTTACAAGGAGGCTGAAGCATTGAGATTGCAGCAGCTGCTGGTGGATGAGGAGGAAGC TGCTCAGAAAAGACAAGCCGAGATTTTAGAGAGGAAGCGCAAGAAGAAGCTTAGACAGAAAGAACAGAAGGCTAGGGAAC GACTTGAAGATGACATGAAAATTGACGGAAACATCAGCAGCACAGGAGAGGATATGTCGCCAGCAGAAGCATCTTTGGCT GCATTTGACTTTGAAGCACATAATCCAGATATACCTGCTGATCACGATTCTTCAACACATGTAACTTACCAATGCCCAGA CACTACTGAAGGTGTAGACGGGGAAACACAGCCAGGGAATGATTATGACCCTGATCAGATTATAGAGCAACAAACATCAC AAGGACATAATCGCCTGCTTCCAATGACTGCCAGACAGCAAGAGCTGCCTAAATCACAGGCGCCTGTAGCCAATGGTTTG TGTGCTAGCCAGAATTCTCAAATGTCAAAGCTTGGAGCCATTCAAAAATATGGAACCAACTGTGATCAGAATGCAGCTCC TATAGTTAACGGTGGTGAAGTTGTGAGCTTGAAGCCTGAACCAAAAACTACTGGGGTGGTTTCAGAAGCCAGGCTGCATA AAGAACCATATGTAAGAAAGAATCATGAAGTTCTGATTGGTTCTGTATCTGTAACACTGGCCAATTGCAGCCAGTCAGAG GGGAGTCTTGTGCCATCTCGAGGGGTCTGCCCGGCAGAGAATCTGGCGAAGCAGAATACTGCTCAGGAGAAGCCAATAAA ACTTGATTGCTTCCAGGGAGGCGAGGGCAGTTTGGCCAATTGCAGCCAGTCAGAGGGGACTCTTGTGGCATCTCGAGGGG TCTGCCCGGCAGAGAATCTGGCGAAGCAGAATACTGCTCAGGAGAAGCCAATTAAACTTGATTGCTTCCAGGGAGGCGAG GGCAGTTTGGCCAATTGCAGCCAGTCAGAGGGGACTCTTGTGGCATCTCGAGGGGTCTGCCCGGCAGAGAATCTGGCGAA GCAGAATACTGCTCAGGAGAAGCCAATAAAACTTGATTGCTTCCAGGGAGGCGAGGGCAGTTTAACACCGGTTAATCAGC ATGAAAGTAAAGGTCCACTGCCACCTCAAAATGGTGGGGCAATAGCTGAGGTAGTAGATGGAAAAGACGGTCAGAACAGT TTAACATTGTGTAATATAGATGATAATGGTTTGAAGAGCAAGTTTTCCCAAACTGGGGCTAAAGGGGATCGGGAAAGGTT ACAGTTCTCCAGCCATGCTGCAAGAGCTTTTCTTGATCAAAGATGGAAAGAAGCCATCTCATCAGACCATGTGAAACTGG TCCTTTCTCCAGATACTACATCTCAGCACAACCAGGATTGCGAAGTAGCACCATGCCTTCCTGCAAATACGGAGAAACCG TTGCCTGCAGCTTCTGGAGGTCCTAAATCCAAACACAGAAAGAAGCCTGGGAAGGAAATGAAGACAAAGTACATTCCCAA GCAAAAACCAACAGCAGCATAG
Protein sequence (LotjaGi5g1v0298600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPVAQPTAASGTLDVMKTEDGKDSVDTLVKQANGLEPVLYYPRIGESSVQWLQFLQALEQPEPIWPLLSVVTKVQLRKCE KCSREFCSPINYRRHLRIDHRLKKLDKDSINNRDLLGEYWDKLSVEEAMEVVSFEDMLLEEVPGSSILKGVANLRRQAFS SLPQNYMRAGFSLLDMVQSNPSSFPISSQELFSILDDASEETFLCGTAVSVQRFMFDGEAGKIVLEPRNLIACTSFLLEQ KLVKACLAYKEAEALRLQQLLVDEEEAAQKRQAEILERKRKKKLRQKEQKARERLEDDMKIDGNISSTGEDMSPAEASLA AFDFEAHNPDIPADHDSSTHVTYQCPDTTEGVDGETQPGNDYDPDQIIEQQTSQGHNRLLPMTARQQELPKSQAPVANGL CASQNSQMSKLGAIQKYGTNCDQNAAPIVNGGEVVSLKPEPKTTGVVSEARLHKEPYVRKNHEVLIGSVSVTLANCSQSE GSLVPSRGVCPAENLAKQNTAQEKPIKLDCFQGGEGSLANCSQSEGTLVASRGVCPAENLAKQNTAQEKPIKLDCFQGGE GSLANCSQSEGTLVASRGVCPAENLAKQNTAQEKPIKLDCFQGGEGSLTPVNQHESKGPLPPQNGGAIAEVVDGKDGQNS LTLCNIDDNGLKSKFSQTGAKGDRERLQFSSHAARAFLDQRWKEAISSDHVKLVLSPDTTSQHNQDCEVAPCLPANTEKP LPAASGGPKSKHRKKPGKEMKTKYIPKQKPTAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 514 | 514 | 5.2E-237 | – | |
| PANTHER | 1 | 514 | 514 | 5.2E-237 | – | |
| ProSiteProfiles | 77 | 105 | 29 | 9.411 | ||
| ProSitePatterns | 79 | 100 | 22 | - | ||
| Coils | 273 | 298 | 26 | - | – | |
| PANTHER | 518 | 559 | 42 | 5.2E-237 | – | |
| PANTHER | 518 | 559 | 42 | 5.2E-237 | – | |
| PANTHER | 563 | 751 | 189 | 5.2E-237 | – | |
| PANTHER | 563 | 751 | 189 | 5.2E-237 | – | |
| MobiDBLite | 698 | 753 | 56 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0298600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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