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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0302900 |
| Transcript ID | LotjaGi5g1v0302900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein; TAIR: AT5G52180.1 transmembrane protein 161AB protein; Swiss-Prot: sp|Q8C2L6|T161B_MOUSE Transmembrane protein 161B; TrEMBL-Plants: tr|A0A072W093|A0A072W093_MEDTR Transmembrane protein 161AB, putative; Found in the gene: LotjaGi5g1v0302900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62093053..62095797) extracted from Lotus japonicus Gifu genome v1.2.
CCAAAACTAAAAGGGAACCTAATCTTCACCCAAAAGTCTCAACCTATAACAAACTGCACAACCAGTATCATTAGGCATTA AATTCCATCATCTCTGAAACAGAAACCAGTGAGCAACACCATTAACCTTCCCAAAGAGCAACCACAATGCTCCATTTCTT GCTATCGTACAAGAATCCATTGCTTCAAGCATCACTCTCCCTCACCCTCGCTTTCATCCTAGCCTTCTTCAGAATCCCCA TCTTCTTCCTCCACGGTCTTCAAACCTACATCCACCCCGATTCCCAACCCCAATCCAATGGCCTCAGAGCCGCCATTCGC CGCCCCGGGATCGACAACTACCAACCCTTATCCTCCAAAACCTCCGCAGAGCTCAGGAAGAGAAGCAAGGCCAAGGACAA GGTCGATTTCGACGAAAACAATGCTCAGATCTTCAGGCTGAGACTCGATGAGGGTCACCTTCAATCTCGTCTCTATGTTG ATCAGTATTGTGCTGCTTTCACCGTTTCCTTTGTTGCCCTTTTCTCTATTTTGCTTCACAGCTTCTTAGATTCGAAGGAG GATCATGGGTTATTGAAAACTGGGGTTATAGTTCCGATTCTGTTATCAATTTTGAGTCTTTACTCGTGGGGTTCGACGCT TGCGAAGACCGCGTTCGAGCGATCCGCGTCTAGGCGGTCGGAGAAGCAATTGAGCATTGTTTTTGGGGTTTTGGGGGTTT TCTTAGGGCTAATGTTTGTTCCTGAGGGTGCTTCATTGGTTTTGGATTTCCATTTCGGGGTTCCGGTTGATGGGCCTATG AGGGTTTTCATTGCAGCATTGATGGGTTGCCTTGCAGGTTTTCTGTTCATTCCTGCTGGTAGAAGTGCAAGATGCTTTTG GCTCGGAACTGATCAAATTCGTTGCAATTTGTCAATGATAACTTGTGGCTGGTTCGCCAGCACGATCCTGTATGCGAATC AATTGTTGGTTATATTTGTGGCTTTGCTGTGGATTACCCCATTGTCTGAAATTTTTGTAAACACTAACTACAATAATAAT AAGGGAGGTAGTGGTATTGGTAGTGCAGAGAAATTGGTGGGGAATCTGGGGTTTTTGCCATCTGATTTCAGTAACTTTAG GCGTTGGTGCTTGTTGGGGTCAAGTTTGTTGCAGATTGTGGCGGTACGGCTAAACCTGCAAATGTATCTGAATGAAGCTT TGTTGTCTTGGTACCAAAGGCTTCATGTTAGCAAGGTTCCTGATCTGGATTATAGCAGGGCGAAGATGTTCCTGCATAAC CACTATGTGTGCCTTGTGGTTTTGCAATTTCTTGGTCCTCCTATGCTGGTACTTGTCTTTCTTGGCTTATCTCAGATTGA TAGTCCTTCCTTTGGAAATTTACCATCTATACTGCCGAGCTCTACTTTTGTCAAGGAAGTTGCTTTGTTTTTTGCTTGGT GGGTTAACTTTCTGTGGGCAATATACTCTTCAGTGATCCTTATGCTACATCGCCATTGTATTTTATATGTTTCTTGAGCA TCTTTTCCCTTGAGGATGATTTTATTGGAGCTTTCAGTGAGTCTTTTATTGTAAGTTGAGTACTTTACAGAATTTCGAGA AGAGTGTTGATCTTATAGCATAAGTTTTGCAGGTTAGTTAACATATCATGACTATCAAATACAACTGAGGTGTATCTTGC TGTTGTAGTTATTGTACTAAGAATTATATACCATAAACTGACTATAGTTATTGCACTAAGAATTATATGCCATAAACTGA CTATAGAAAGACCAAAGTTAAATGCTATTTCATGTGCCTTCCAAAATATCATGCAAACTTACACATGTTATAATTCGTAA ATTAGAGATATATATACAGCCAGAATATCTTGTTCTGTGTTGAGCCTGTTGACACATCATGTCATGTAATAGTCAAGTGC AGCACATGGATAAGCCATTTATGTATTTTTCCTTTAACTAAACCTTGCCATGCTCGTTCATCCTCCTTTTGACCTTTTGT AGTCTACTCTTTTTGGGAACCATGTTTCATATTCTTGCTGGAAACATCTATGAAGGCATTCTTTTAGATGTTTACTTATC CAATTATAGATTTATTATATCTGCCCCAGCAGGTGTCAGTGTTACTGTTTTCTTTCTTTCCTCCCTCTCTTCATAACAAC TATGTATGAAAATGAAATAAAGTATAAGCATTATTTTCTAAAATATTATTAGAACCCTCATGACGAGTGTCAAGTGTTTC AAGATCTCATATTGTTGTTAGTGTTACTTTTAACACATTGCATTGCAATAGATCAACTGTGGTGTATTTAAATTTAACCA TTTTATATAAATAAAGAAATAACAACTATTATGTCTTGGTGTAAATTTATTAGCCCATAAATTCCTGCTATAAGAATGCC CTGTGTGGCTGTGTGTAACTGGAGACTAGAAATGTGAGCATTTTTAGGTCCTAACTTTGCAATATGTTTTGTGTTTATGA TTTTTGTGTGTGTTGACTACAAATGTAATTTGCAAGGACATTGCTATAGCTTGTTTTTACCCCTTAATAAGTGATTCACT ATATCTGCAAACTATGTCAGAGAGTGCTTCTTCCCCAGCATATGAAACTGAAATGATGTATGTATGGACATCAAATGCTT TTAGTATCATGTTAAATCCTGTTTGATTGTGTGTTTGAAGATCTTAAAATGATAATAATTGATTCTCTTTCTTTGCACGG TAAGTTAATCATATGTTCATGCACT
CDS sequence (LotjaGi5g1v0302900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCCATTTCTTGCTATCGTACAAGAATCCATTGCTTCAAGCATCACTCTCCCTCACCCTCGCTTTCATCCTAGCCTT CTTCAGAATCCCCATCTTCTTCCTCCACGGTCTTCAAACCTACATCCACCCCGATTCCCAACCCCAATCCAATGGCCTCA GAGCCGCCATTCGCCGCCCCGGGATCGACAACTACCAACCCTTATCCTCCAAAACCTCCGCAGAGCTCAGGAAGAGAAGC AAGGCCAAGGACAAGGTCGATTTCGACGAAAACAATGCTCAGATCTTCAGGCTGAGACTCGATGAGGGTCACCTTCAATC TCGTCTCTATGTTGATCAGTATTGTGCTGCTTTCACCGTTTCCTTTGTTGCCCTTTTCTCTATTTTGCTTCACAGCTTCT TAGATTCGAAGGAGGATCATGGGTTATTGAAAACTGGGGTTATAGTTCCGATTCTGTTATCAATTTTGAGTCTTTACTCG TGGGGTTCGACGCTTGCGAAGACCGCGTTCGAGCGATCCGCGTCTAGGCGGTCGGAGAAGCAATTGAGCATTGTTTTTGG GGTTTTGGGGGTTTTCTTAGGGCTAATGTTTGTTCCTGAGGGTGCTTCATTGGTTTTGGATTTCCATTTCGGGGTTCCGG TTGATGGGCCTATGAGGGTTTTCATTGCAGCATTGATGGGTTGCCTTGCAGGTTTTCTGTTCATTCCTGCTGGTAGAAGT GCAAGATGCTTTTGGCTCGGAACTGATCAAATTCGTTGCAATTTGTCAATGATAACTTGTGGCTGGTTCGCCAGCACGAT CCTGTATGCGAATCAATTGTTGGTTATATTTGTGGCTTTGCTGTGGATTACCCCATTGTCTGAAATTTTTGTAAACACTA ACTACAATAATAATAAGGGAGGTAGTGGTATTGGTAGTGCAGAGAAATTGGTGGGGAATCTGGGGTTTTTGCCATCTGAT TTCAGTAACTTTAGGCGTTGGTGCTTGTTGGGGTCAAGTTTGTTGCAGATTGTGGCGGTACGGCTAAACCTGCAAATGTA TCTGAATGAAGCTTTGTTGTCTTGGTACCAAAGGCTTCATGTTAGCAAGGTTCCTGATCTGGATTATAGCAGGGCGAAGA TGTTCCTGCATAACCACTATGTGTGCCTTGTGGTTTTGCAATTTCTTGGTCCTCCTATGCTGGTACTTGTCTTTCTTGGC TTATCTCAGATTGATAGTCCTTCCTTTGGAAATTTACCATCTATACTGCCGAGCTCTACTTTTGTCAAGGAAGTTGCTTT GTTTTTTGCTTGGTGGGTTAACTTTCTGTGGGCAATATACTCTTCAGTGATCCTTATGCTACATCGCCATTGTATTTTAT ATGTTTCTTGA
Protein sequence (LotjaGi5g1v0302900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLHFLLSYKNPLLQASLSLTLAFILAFFRIPIFFLHGLQTYIHPDSQPQSNGLRAAIRRPGIDNYQPLSSKTSAELRKRS KAKDKVDFDENNAQIFRLRLDEGHLQSRLYVDQYCAAFTVSFVALFSILLHSFLDSKEDHGLLKTGVIVPILLSILSLYS WGSTLAKTAFERSASRRSEKQLSIVFGVLGVFLGLMFVPEGASLVLDFHFGVPVDGPMRVFIAALMGCLAGFLFIPAGRS ARCFWLGTDQIRCNLSMITCGWFASTILYANQLLVIFVALLWITPLSEIFVNTNYNNNKGGSGIGSAEKLVGNLGFLPSD FSNFRRWCLLGSSLLQIVAVRLNLQMYLNEALLSWYQRLHVSKVPDLDYSRAKMFLHNHYVCLVVLQFLGPPMLVLVFLG LSQIDSPSFGNLPSILPSSTFVKEVALFFAWWVNFLWAIYSSVILMLHRHCILYVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 5 | 456 | 452 | 1.6E-134 | ||
| PANTHER | 5 | 456 | 452 | 1.6E-134 | – | |
| Phobius | 12 | 35 | 24 | - | – | |
| TMHMM | 15 | 37 | 23 | - | – | |
| Phobius | 36 | 113 | 78 | - | – | |
| Phobius | 114 | 134 | 21 | - | – | |
| TMHMM | 114 | 133 | 20 | - | – | |
| Phobius | 135 | 139 | 5 | - | – | |
| Phobius | 140 | 161 | 22 | - | – | |
| TMHMM | 148 | 170 | 23 | - | – | |
| Phobius | 162 | 181 | 20 | - | – | |
| Phobius | 182 | 198 | 17 | - | – | |
| TMHMM | 182 | 204 | 23 | - | – | |
| Phobius | 199 | 217 | 19 | - | – | |
| Phobius | 218 | 237 | 20 | - | – | |
| Pfam | 218 | 398 | 181 | 3.0E-11 | ||
| TMHMM | 219 | 241 | 23 | - | – | |
| Phobius | 238 | 257 | 20 | - | – | |
| Phobius | 258 | 283 | 26 | - | – | |
| TMHMM | 261 | 283 | 23 | - | – | |
| Phobius | 284 | 323 | 40 | - | – | |
| Phobius | 324 | 344 | 21 | - | – | |
| TMHMM | 327 | 344 | 18 | - | – | |
| Phobius | 345 | 379 | 35 | - | – | |
| Phobius | 380 | 401 | 22 | - | – | |
| TMHMM | 380 | 402 | 23 | - | – | |
| Phobius | 402 | 420 | 19 | - | – | |
| Phobius | 421 | 447 | 27 | - | – | |
| TMHMM | 425 | 447 | 23 | - | – | |
| Phobius | 448 | 456 | 9 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0302900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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