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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0303400 |
| Transcript ID | LotjaGi5g1v0303400.7 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ankyrin repeat-containing protein, putative; TAIR: AT5G07270.1 hypothetical protein; Swiss-Prot: sp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT33; TrEMBL-Plants: tr|A0A022QCT6|A0A022QCT6_ERYGU Uncharacterized protein; Found in the gene: LotjaGi5g1v0303400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62135775..62136585) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAAATTCGTTTGGATGCTCAGCCTCCGGTGAGAGGCTGGTGTCGGCGGCGAGGGACGGCGACTTTGTGGAGGCGAA GATGCTTCTGAACTGCAACCCTTGTCTCGCCAAGTACTCCACCTTTGGTGGCCTCAATTCGCCTCTCCATTTTGCTGCTG CCAAGGGCCACAACGAGGTTGGTTTTTCTCTATTGCCCATTTTCTCTTCTACCTTCGTTTCGCCAAATTTTGTATCTTTT TTCATTTTTGCCATCTGGGTTTCCATTAGATTGTGGCGTTGTTGCTAGAGAATGGAGCTGATGTGAATTCAAGAAATTAT TCTGGACAGGTATGGCTCTCTCTCTCTCTCTCTCTCTCATGTTATGATCATTCGTTTTGAATTGATGAATAAATTGTATG ATATGATTAAAAATGGGTGAGTGAGATGAGATGATTATAGTTGCTGGTCAATTTGCAATACTGGAAGTTTTTTTTTTTGT ATTTGAAATTAGGTGTGTGTTGTCCATTTTGGGTATGATTCTATTCCATGAGGCAAATTGCTGCCTGTTGATTGATGGAT CTGGTGTCAATTTAGTAGATTCCAGCTCAATTGGGTTTCTGGTACATGTGCTGGCTGTACTAATGTGAGAACATGGTTTG CTTTGATACTTGATTTTGCAGACGGCCTTGATGCAAGCTTGTAGATATGGGCACTGGGAAGTTGTACAGACACTTATACT TTACAAATGCAATGTGAGTCCTGTTATTCTTTCAACCATTTCTATCTAAATTGTTTTTCAGTTTCACCAGAACTTTGTAT TTACTATATAG
CDS sequence (LotjaGi5g1v0303400.7) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAATTCGTTTGGATGCTCAGCCTCCGGTGAGAGGCTGGTGTCGGCGGCGAGGGACGGCGACTTTGTGGAGGCGAA GATGCTTCTGAACTGCAACCCTTGTCTCGCCAAGTACTCCACCTTTGGTGGCCTCAATTCGCCTCTCCATTTTGCTGCTG CCAAGGGCCACAACGAGATTGTGGCGTTGTTGCTAGAGAATGGAGCTGATGTGAATTCAAGAAATTATTCTGGACAGACG GCCTTGATGCAAGCTTGTAGATATGGGCACTGGGAAGTTGTACAGACACTTATACTTTACAAATGCAATGTGAGTCCTGT TATTCTTTCAACCATTTCTATCTAA
Protein sequence (LotjaGi5g1v0303400.7) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNSFGCSASGERLVSAARDGDFVEAKMLLNCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYSGQT ALMQACRYGHWEVVQTLILYKCNVSPVILSTISI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 105 | 105 | 2.5E-70 | – | |
| PANTHER | 1 | 105 | 105 | 2.5E-70 | – | |
| Gene3D | 5 | 108 | 104 | 4.6E-25 | ||
| SUPERFAMILY | 14 | 105 | 92 | 3.42E-22 | ||
| Pfam | 16 | 104 | 89 | 8.7E-15 | ||
| ProSiteProfiles | 44 | 76 | 33 | 14.532 | ||
| SMART | 44 | 73 | 30 | 1.8E-5 | ||
| ProSiteProfiles | 44 | 98 | 55 | 21.084 | ||
| SMART | 77 | 106 | 30 | 0.25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0303400.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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