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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0304600 |
| Transcript ID | LotjaGi5g1v0304600.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TraB family protein; TAIR: AT5G52030.1 TraB family protein; Swiss-Prot: sp|Q99JY4|TRABD_MOUSE TraB domain-containing protein; TrEMBL-Plants: tr|K7LL49|K7LL49_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0304600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62278588..62282250) extracted from Lotus japonicus Gifu genome v1.2.
ACGACTCGTTTCTTCACAGACTTCACGACTAAAAGTTCTGCATTGCTTCCTCACCCTTCACTTCAACTCCTTGTTATCAT CATCTTCCTCACTCATCTTCCATTCCATGGACTCCATCATCAAATCACCCTTCCCAGTTTTCATGACCAACCCATTTTCA CTCTCTGCAAGACCTCTCAGCAGACCCTTCAAGGTTTCCATCAAACCACCACCTCCAGGTTTCGATTACAGGCTAGAGAT ATTCGAGGAGTCCAGAGCCGCCATAGCTGCATCTCACCCTGAGTTGCTCGACTTGGCTGACAATGGGAGCTTGGTTTTGG TCCAGAAGAAGAGGTTCGGACCTGTCCCTTCTTGGAGAACTGAATTTGTCGAACCTGAGTCAATATGGTTGGTGGGAACT ACCCATGTTTCGAAAGAGTCTGCTTTTGAAGTAGAGCGTGTTGTAAAGGCTGTTAGGCCAGATAATGTGGTTGTAGAACT CTGTAGAAGCAGGTAACCACTCATTTTTTCTTCACCACCATGAAAAATTTGATATTGTTATGTAGAGTTCTATTCATGTG AGTTATTTCAGCTATACAATTCAAGACATTTGAAAAGAAGGTTTTAATCTATGGGATGATTTCAACTTTTGATGTTAAGG TTGTGAATCTTGTCATAGATATGGCTGCTATATATCTTAACAATTTTACAAACCATGTAGCTTGTGGTTGTGCCTAGCTT TTTGGTGTGTGTTGGATTTCAGTTAGCAAAGGTTCAAACCACCTTAAAAGGAAATCCTTGTCTCACAATAGATTGGAAGA AAAATTAGTTTTAGGTGAATGTACAAGAAATCCAAATTACTCTTCATAGTAAGAAAATTCATTTAATTATTTTCCAAAAT GAGCGAGAACGCTATCTTAAGGAGGGTTGTTGGACAAGAAAGCAATGTAGGCAAGTTATTGTGGTTTGTTGGTTCCCTGT ACTTTTGTGTGTGGTTAATATGAATGTGTGAAAATTTCATAAGAGATAAGCTCCACTTATAACTCATATTATCTGTGGCT TTTAATTTTATTTTTCAACTGAAATCATAAGTTATGTATATGTCAAAAAATTGTTTATTGTCAATCTACATCTGAACTTC AATTGCTGCAGATTTCATTTCCAGAGCTGGGATCATGTATGCTACTGCTGATGATGAGCTTGGCAAACAATTAAGGTCTA ATATGTTTTCTTTGAGCGGGACTGGGTTTTTTGGAGCTGTTGGTCGTAGCATAAACCTGGGTAAGCACAAATTTGTTTGA CATGTTTCTCTGATTGCTATAAAAGAATGTTATTTATTGTTTATCTAAATGCCAGGTGGTCAAACTGCTTTAGCATTACG ATTACTTCTGGCTGCTTTTTCATCAAAGATCTCTTCAGATATTAACCGACCCTTCGGTGATGAGGTAGTTTCTAAGTATT CTATCTTTGTAGCACTTGGATGTAGGACTTCTTTTGACTAAGGCAATGTCTGTTACGCAGTTCCGTGCTGCTCGAAAAGC TTCTGAGGAAGTTGGGGCGCAAATAGTTTTGGGAGATCGGCCAATTGAAATAACAGTATGTACATATTACATCACGAAAC ACAGGCAAAAATAGTTCTTTAAAGGAAATAAATTAGCTCAGTTTTTTGTTTGGATTTTTATATGTTGAATTTGAACCATG CCAAACAAGTGAAAAGTTCTGAATGATCTTGGATGCTGGAGTTCGTGATTACATTTTATGTGGTAAATCACAGACAACAT TCTCTTTGTCTATAATCTGTCTTGCAGCTTCAGAGAGCTTGGAAGTCTTTGAAATGGACTGAGAAAGTGAGTTTAGTGAG ATCAGTTATTCGTGCGATAGCATCTTCATCTAATATTTCTTCAAATGAACTTGAGGTAGCTTCCTAGCCATGGCATAAGA TTTAAATTTATACTCTTTTTTCCTTGTTAAGAGTCATGCTTTTATATGCTCGATCCATGATTGTTGAGGAATGAAAAATT GAGGTACTTTGAACTGTCTATTCAAGATAATTAACTCACTTTGAAAATAATCCTCATTTTTATACAATGATTTATAGAAC TAAGGTACTCTGGAAAAGTTCATATGATCTGCATTAGTAATCTACATTTCTTCTATTGAACGTGAGCTGTGCCATCGCTC AACTTAGTTTTATTGGAAAGCTTGCTATGATGGTATTTTGTGCAAGACACTTTGATGCAGTGGGGTATACATGGATGCAT TTGCAACCTTTTTTTTCAAGCCTGTATTTCACTACCTGTGCTCTGTAGTAAGGGTTTACAGTGGGTGTTCTCGGCAAAGG AACCATACAATGTGAGGGGATGCAGGATCTCAACATTCTTTTTGCTGCCATACAAATTTTGCAGTACATAGATAAAAAAA GAGGATGTGACAGGAAGAGGGAGAGGGAGATGAATAATTAATCCTGATGCTTTTATAATGTATGTTTTGCCAAAGTTTGC CATGGTAGTTATTTGGAAAAACTGAATAGTCAAATCTTGTTAGTTGCAGGAAGCTAGGTCAGATGGTGGTAAATTTCAGC TTTATGAGCAACTGAGTTTTTCATATCCATCACTATTGCCGCCTCTTATACACGAAAGAGATATTGTAAGTTTTACCTTG TATATATGGCTTTCTTTCTTTCTTATTTGGTTCCTTAAGCATTGGGATCCATAAATGCCTTTCAATCTCTTTCAAATTAT TCATTTCCCTCTTATTTTTTTCTAAAGAAGTTTTGGTAAACCAACTGAAAATTATATAGATAAAAAGGTTATAAACAGAG AGAGTAAACACGCATGAAGTTCTTGCATAAAGATATATCTTCAATTCAAATTGATAAGGAGTCAACTTTCATGTCATCAG TCCTACTTGTGTGGTTTTTGCAGTATCTTGCATGGTCTCTGAAGCGGAGCAAAGCTGTGAATAACTGTAAAAGTGTAGTT GGTGTCATTGGAAAAGGCCACATGAATGGTGTTGTATATGGACTGGTATCTGATACAGGGAGTTTGAGGTTTCGAGACCT TGCAGGGAAAAATTCAGATGATGGGGGCTGGATTGATGGCCTAGTCAAGAGTTTAGTGAGGGACACCATCATCGGCATCA TCTTATGGGCCTTATACGAATTCATAAACGGCAGAACATAAACCAAACCCATTACTTATTCAGATTTGGTGAGAAATCCC AATCTTCAAGAGCAAAAGATTATACTAAGAGATTTTATCTTAGTTGTACATCATGATTTACATAAAGCAGGTACGCCATT GCTTTGTTATGAAGAAAAAAGAGATACAACAGGAGAGAAGAAAGGGAGTGCTAGTTTTATATTTTGCTAGTTATGTGATG GGAATATTGTTTGCAAGTAATATTTCCCATTGCACTAAAATACAGATATGAAAATTGTAACTATTTGTACCACAATGCCA CTGGTTAGAGAAACAGGTTCATGTACTTTCTTACATAAATTGGTCACTTTTTTATCAGCCACTGAGCTTGAACTGTTAGA ATGGAAGCTTCATAAATGTTTGTGGCAGAGACTTTGAAAATTCAAGAAGCTCCATGCTTAGTGGTTTGAAAATAGTACTT TAGGATAAAGTTCATTGTTGTGTAATCAAAATTTGATGCATTTTTTTAAAAATAGATTATAAA
CDS sequence (LotjaGi5g1v0304600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATGCTACTGCTGATGATGAGCTTGGCAAACAATTAAGGTCTAATATGTTTTCTTTGAGCGGGACTGGGTTTTTTGG AGCTGTTGGTCGTAGCATAAACCTGGGTGGTCAAACTGCTTTAGCATTACGATTACTTCTGGCTGCTTTTTCATCAAAGA TCTCTTCAGATATTAACCGACCCTTCGGTGATGAGTTCCGTGCTGCTCGAAAAGCTTCTGAGGAAGTTGGGGCGCAAATA GTTTTGGGAGATCGGCCAATTGAAATAACACTTCAGAGAGCTTGGAAGTCTTTGAAATGGACTGAGAAAGTGAGTTTAGT GAGATCAGTTATTCGTGCGATAGCATCTTCATCTAATATTTCTTCAAATGAACTTGAGGAAGCTAGGTCAGATGGTGGTA AATTTCAGCTTTATGAGCAACTGAGTTTTTCATATCCATCACTATTGCCGCCTCTTATACACGAAAGAGATATTTATCTT GCATGGTCTCTGAAGCGGAGCAAAGCTGTGAATAACTGTAAAAGTGTAGTTGGTGTCATTGGAAAAGGCCACATGAATGG TGTTGTATATGGACTGGTATCTGATACAGGGAGTTTGAGGTTTCGAGACCTTGCAGGGAAAAATTCAGATGATGGGGGCT GGATTGATGGCCTAGTCAAGAGTTTAGTGAGGGACACCATCATCGGCATCATCTTATGGGCCTTATACGAATTCATAAAC GGCAGAACATAA
Protein sequence (LotjaGi5g1v0304600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYATADDELGKQLRSNMFSLSGTGFFGAVGRSINLGGQTALALRLLLAAFSSKISSDINRPFGDEFRAARKASEEVGAQI VLGDRPIEITLQRAWKSLKWTEKVSLVRSVIRAIASSSNISSNELEEARSDGGKFQLYEQLSFSYPSLLPPLIHERDIYL AWSLKRSKAVNNCKSVVGVIGKGHMNGVVYGLVSDTGSLRFRDLAGKNSDDGGWIDGLVKSLVRDTIIGIILWALYEFIN GRT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 240 | 237 | 1.1E-137 | – | |
| PANTHER | 4 | 240 | 237 | 1.1E-137 | – | |
| CDD | 50 | 189 | 140 | 8.55261E-33 | – | |
| Pfam | 55 | 188 | 134 | 3.3E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0304600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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