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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0304600 |
Transcript ID | LotjaGi5g1v0304600.3 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | TraB family protein; TAIR: AT5G52030.1 TraB family protein; Swiss-Prot: sp|Q99JY4|TRABD_MOUSE TraB domain-containing protein; TrEMBL-Plants: tr|I1LDV2|I1LDV2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0304600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62279090..62281145) extracted from Lotus japonicus Gifu genome v1.2.
CTACATCTGAACTTCAATTGCTGCAGATTTCATTTCCAGAGCTGGGATCATGTATGCTACTGCTGATGATGAGCTTGGCA AACAATTAAGGTCTAATATGTTTTCTTTGAGCGGGACTGGGTTTTTTGGAGCTGTTGGTCGTAGCATAAACCTGGGTAAG CACAAATTTGTTTGACATGTTTCTCTGATTGCTATAAAAGAATGTTATTTATTGTTTATCTAAATGCCAGGTGGTCAAAC TGCTTTAGCATTACGATTACTTCTGGCTGCTTTTTCATCAAAGATCTCTTCAGATATTAACCGACCCTTCGGTGATGAGG TAGTTTCTAAGTATTCTATCTTTGTAGCACTTGGATGTAGGACTTCTTTTGACTAAGGCAATGTCTGTTACGCAGTTCCG TGCTGCTCGAAAAGCTTCTGAGGAAGTTGGGGCGCAAATAGTTTTGGGAGATCGGCCAATTGAAATAACAGTATGTACAT ATTACATCACGAAACACAGGCAAAAATAGTTCTTTAAAGGAAATAAATTAGCTCAGTTTTTTGTTTGGATTTTTATATGT TGAATTTGAACCATGCCAAACAAGTGAAAAGTTCTGAATGATCTTGGATGCTGGAGTTCGTGATTACATTTTATGTGGTA AATCACAGACAACATTCTCTTTGTCTATAATCTGTCTTGCAGCTTCAGAGAGCTTGGAAGTCTTTGAAATGGACTGAGAA AGTGAGTTTAGTGAGATCAGTTATTCGTGCGATAGCATCTTCATCTAATATTTCTTCAAATGAACTTGAGGTAGCTTCCT AGCCATGGCATAAGATTTAAATTTATACTCTTTTTTCCTTGTTAAGAGTCATGCTTTTATATGCTCGATCCATGATTGTT GAGGAATGAAAAATTGAGGTACTTTGAACTGTCTATTCAAGATAATTAACTCACTTTGAAAATAATCCTCATTTTTATAC AATGATTTATAGAACTAAGGTACTCTGGAAAAGTTCATATGATCTGCATTAGTAATCTACATTTCTTCTATTGAACGTGA GCTGTGCCATCGCTCAACTTAGTTTTATTGGAAAGCTTGCTATGATGGTATTTTGTGCAAGACACTTTGATGCAGTGGGG TATACATGGATGCATTTGCAACCTTTTTTTTCAAGCCTGTATTTCACTACCTGTGCTCTGTAGTAAGGGTTTACAGTGGG TGTTCTCGGCAAAGGAACCATACAATGTGAGGGGATGCAGGATCTCAACATTCTTTTTGCTGCCATACAAATTTTGCAGT ACATAGATAAAAAAAGAGGATGTGACAGGAAGAGGGAGAGGGAGATGAATAATTAATCCTGATGCTTTTATAATGTATGT TTTGCCAAAGTTTGCCATGGTAGTTATTTGGAAAAACTGAATAGTCAAATCTTGTTAGTTGCAGGAAGCTAGGTCAGATG GTGGTAAATTTCAGCTTTATGAGCAACTGAGTTTTTCATATCCATCACTATTGCCGCCTCTTATACACGAAAGAGATATT GTAAGTTTTACCTTGTATATATGGCTTTCTTTCTTTCTTATTTGGTTCCTTAAGCATTGGGATCCATAAATGCCTTTCAA TCTCTTTCAAATTATTCATTTCCCTCTTATTTTTTTCTAAAGAAGTTTTGGTAAACCAACTGAAAATTATATAGATAAAA AGGTTATAAACAGAGAGAGTAAACACGCATGAAGTTCTTGCATAAAGATATATCTTCAATTCAAATTGATAAGGAGTCAA CTTTCATGTCATCAGTCCTACTTGTGTGGTTTTTGCAGTATCTTGCATGGTCTCTGAAGCGGAGCAAAGCTGTGAATAAC TGTAAAAGTGTAGTTGGTGTCATTGGAAAAGGCCACATGAATGGTGTTGTATATGGACTGGTATCTGATACAGGGAGTTT GAGGTTTCGAGACCTTGCAGGGAAAAATTCAGATGATGGGGGCTGGATTGATGGCCTAGTCAAGAGTTTAGTGAGGGACA CCATCATCGGCATCATCTTATGGGCCTTATACGAATTCATAAACGGCAGAACATAA
CDS sequence (LotjaGi5g1v0304600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATGCTACTGCTGATGATGAGCTTGGCAAACAATTAAGGTCTAATATGTTTTCTTTGAGCGGGACTGGGTTTTTTGG AGCTGTTGGTCGTAGCATAAACCTGGGTGGTCAAACTGCTTTAGCATTACGATTACTTCTGGCTGCTTTTTCATCAAAGA TCTCTTCAGATATTAACCGACCCTTCGGTGATGAGTTCCGTGCTGCTCGAAAAGCTTCTGAGGAAGTTGGGGCGCAAATA GTTTTGGGAGATCGGCCAATTGAAATAACACTTCAGAGAGCTTGGAAGTCTTTGAAATGGACTGAGAAAGTGAGTTTAGT GAGATCAGTTATTCGTGCGATAGCATCTTCATCTAATATTTCTTCAAATGAACTTGAGTTGCAGGAAGCTAGGTCAGATG GTGGTAAATTTCAGCTTTATGAGCAACTGAGTTTTTCATATCCATCACTATTGCCGCCTCTTATACACGAAAGAGATATT TATCTTGCATGGTCTCTGAAGCGGAGCAAAGCTGTGAATAACTGTAAAAGTGTAGTTGGTGTCATTGGAAAAGGCCACAT GAATGGTGTTGTATATGGACTGGTATCTGATACAGGGAGTTTGAGGTTTCGAGACCTTGCAGGGAAAAATTCAGATGATG GGGGCTGGATTGATGGCCTAGTCAAGAGTTTAGTGAGGGACACCATCATCGGCATCATCTTATGGGCCTTATACGAATTC ATAAACGGCAGAACATAA
Protein sequence (LotjaGi5g1v0304600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYATADDELGKQLRSNMFSLSGTGFFGAVGRSINLGGQTALALRLLLAAFSSKISSDINRPFGDEFRAARKASEEVGAQI VLGDRPIEITLQRAWKSLKWTEKVSLVRSVIRAIASSSNISSNELELQEARSDGGKFQLYEQLSFSYPSLLPPLIHERDI YLAWSLKRSKAVNNCKSVVGVIGKGHMNGVVYGLVSDTGSLRFRDLAGKNSDDGGWIDGLVKSLVRDTIIGIILWALYEF INGRT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 4 | 242 | 239 | 9.4E-137 | – | |
PANTHER | 4 | 242 | 239 | 9.4E-137 | – | |
CDD | 50 | 191 | 142 | 1.87171E-32 | – | |
Pfam | 55 | 190 | 136 | 7.4E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0304600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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