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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0304600 |
Transcript ID | LotjaGi5g1v0304600.4 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | TraB family protein; TAIR: AT5G52030.2 TraB family protein; Swiss-Prot: sp|Q9H4I3|TRABD_HUMAN TraB domain-containing protein; TrEMBL-Plants: tr|K7LL49|K7LL49_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0304600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62279090..62282153) extracted from Lotus japonicus Gifu genome v1.2.
TTCCATTCCATGGACTCCATCATCAAATCACCCTTCCCAGTTTTCATGACCAACCCATTTTCACTCTCTGCAAGACCTCT CAGCAGACCCTTCAAGGTTTCCATCAAACCACCACCTCCAGGTTTCGATTACAGGCTAGAGATATTCGAGGAGTCCAGAG CCGCCATAGCTGCATCTCACCCTGAGTTGCTCGACTTGGCTGACAATGGGAGCTTGGTTTTGGTCCAGAAGAAGAGGTTC GGACCTGTCCCTTCTTGGAGAACTGAATTTGTCGAACCTGAGTCAATATGGTTGGTGGGAACTACCCATGTTTCGAAAGA GTCTGCTTTTGAAGTAGAGCGTGTTGTAAAGGCTGTTAGGCCAGATAATGTGGTTGTAGAACTCTGTAGAAGCAGGTAAC CACTCATTTTTTCTTCACCACCATGAAAAATTTGATATTGTTATGTAGAGTTCTATTCATGTGAGTTATTTCAGCTATAC AATTCAAGACATTTGAAAAGAAGGTTTTAATCTATGGGATGATTTCAACTTTTGATGTTAAGGTTGTGAATCTTGTCATA GATATGGCTGCTATATATCTTAACAATTTTACAAACCATGTAGCTTGTGGTTGTGCCTAGCTTTTTGGTGTGTGTTGGAT TTCAGTTAGCAAAGGTTCAAACCACCTTAAAAGGAAATCCTTGTCTCACAATAGATTGGAAGAAAAATTAGTTTTAGGTG AATGTACAAGAAATCCAAATTACTCTTCATAGTAAGAAAATTCATTTAATTATTTTCCAAAATGAGCGAGAACGCTATCT TAAGGAGGGTTGTTGGACAAGAAAGCAATGTAGGCAAGTTATTGTGGTTTGTTGGTTCCCTGTACTTTTGTGTGTGGTTA ATATGAATGTGTGAAAATTTCATAAGAGATAAGCTCCACTTATAACTCATATTATCTGTGGCTTTTAATTTTATTTTTCA ACTGAAATCATAAGTTATGTATATGTCAAAAAATTGTTTATTGTCAATCTACATCTGAACTTCAATTGCTGCAGATTTCA TTTCCAGAGCTGGGATCATGTATGCTACTGCTGATGATGAGCTTGGCAAACAATTAAGGTCTAATATGTTTTCTTTGAGC GGGACTGGGTTTTTTGGAGCTGTTGGTCGTAGCATAAACCTGGGTAAGCACAAATTTGTTTGACATGTTTCTCTGATTGC TATAAAAGAATGTTATTTATTGTTTATCTAAATGCCAGGTGGTCAAACTGCTTTAGCATTACGATTACTTCTGGCTGCTT TTTCATCAAAGATCTCTTCAGATATTAACCGACCCTTCGGTGATGAGGTAGTTTCTAAGTATTCTATCTTTGTAGCACTT GGATGTAGGACTTCTTTTGACTAAGGCAATGTCTGTTACGCAGTTCCGTGCTGCTCGAAAAGCTTCTGAGGAAGTTGGGG CGCAAATAGTTTTGGGAGATCGGCCAATTGAAATAACAGTATGTACATATTACATCACGAAACACAGGCAAAAATAGTTC TTTAAAGGAAATAAATTAGCTCAGTTTTTTGTTTGGATTTTTATATGTTGAATTTGAACCATGCCAAACAAGTGAAAAGT TCTGAATGATCTTGGATGCTGGAGTTCGTGATTACATTTTATGTGGTAAATCACAGACAACATTCTCTTTGTCTATAATC TGTCTTGCAGCTTCAGAGAGCTTGGAAGTCTTTGAAATGGACTGAGAAAGTGAGTTTAGTGAGATCAGTTATTCGTGCGA TAGCATCTTCATCTAATATTTCTTCAAATGAACTTGAGGTAGCTTCCTAGCCATGGCATAAGATTTAAATTTATACTCTT TTTTCCTTGTTAAGAGTCATGCTTTTATATGCTCGATCCATGATTGTTGAGGAATGAAAAATTGAGGTACTTTGAACTGT CTATTCAAGATAATTAACTCACTTTGAAAATAATCCTCATTTTTATACAATGATTTATAGAACTAAGGTACTCTGGAAAA GTTCATATGATCTGCATTAGTAATCTACATTTCTTCTATTGAACGTGAGCTGTGCCATCGCTCAACTTAGTTTTATTGGA AAGCTTGCTATGATGGTATTTTGTGCAAGACACTTTGATGCAGTGGGGTATACATGGATGCATTTGCAACCTTTTTTTTC AAGCCTGTATTTCACTACCTGTGCTCTGTAGTAAGGGTTTACAGTGGGTGTTCTCGGCAAAGGAACCATACAATGTGAGG GGATGCAGGATCTCAACATTCTTTTTGCTGCCATACAAATTTTGCAGTACATAGATAAAAAAAGAGGATGTGACAGGAAG AGGGAGAGGGAGATGAATAATTAATCCTGATGCTTTTATAATGTATGTTTTGCCAAAGTTTGCCATGGTAGTTATTTGGA AAAACTGAATAGTCAAATCTTGTTAGTTGCAGGAAGCTAGGTCAGATGGTGGTAAATTTCAGCTTTATGAGCAACTGAGT TTTTCATATCCATCACTATTGCCGCCTCTTATACACGAAAGAGATATTGTAAGTTTTACCTTGTATATATGGCTTTCTTT CTTTCTTATTTGGTTCCTTAAGCATTGGGATCCATAAATGCCTTTCAATCTCTTTCAAATTATTCATTTCCCTCTTATTT TTTTCTAAAGAAGTTTTGGTAAACCAACTGAAAATTATATAGATAAAAAGGTTATAAACAGAGAGAGTAAACACGCATGA AGTTCTTGCATAAAGATATATCTTCAATTCAAATTGATAAGGAGTCAACTTTCATGTCATCAGTCCTACTTGTGTGGTTT TTGCAGTATCTTGCATGGTCTCTGAAGCGGAGCAAAGCTGTGAATAACTGTAAAAGTGTAGTTGGTGTCATTGGAAAAGG CCACATGAATGGTGTTGTATATGGACTGGTATCTGATACAGGGAGTTTGAGGTTTCGAGACCTTGCAGGGAAAAATTCAG ATGATGGGGGCTGGATTGATGGCCTAGTCAAGAGTTTAGTGAGGGACACCATCATCGGCATCATCTTATGGGCCTTATAC GAATTCATAAACGGCAGAACATAA
CDS sequence (LotjaGi5g1v0304600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTCCATCATCAAATCACCCTTCCCAGTTTTCATGACCAACCCATTTTCACTCTCTGCAAGACCTCTCAGCAGACC CTTCAAGGTTTCCATCAAACCACCACCTCCAGGTTTCGATTACAGGCTAGAGATATTCGAGGAGTCCAGAGCCGCCATAG CTGCATCTCACCCTGAGTTGCTCGACTTGGCTGACAATGGGAGCTTGGTTTTGGTCCAGAAGAAGAGGTTCGGACCTGTC CCTTCTTGGAGAACTGAATTTGTCGAACCTGAGTCAATATGGTTGGTGGGAACTACCCATGTTTCGAAAGAGTCTGCTTT TGAAGTAGAGCGTGTTGTAAAGGCTGTTAGGCCAGATAATGTGGTTGTAGAACTCTGTAGAAGCAGAGCTGGGATCATGT ATGCTACTGCTGATGATGAGCTTGGCAAACAATTAAGGTCTAATATGTTTTCTTTGAGCGGGACTGGGTTTTTTGGAGCT GTTGGTCGTAGCATAAACCTGGGTGGTCAAACTGCTTTAGCATTACGATTACTTCTGGCTGCTTTTTCATCAAAGATCTC TTCAGATATTAACCGACCCTTCGGTGATGAGTTCCGTGCTGCTCGAAAAGCTTCTGAGGAAGTTGGGGCGCAAATAGTTT TGGGAGATCGGCCAATTGAAATAACACTTCAGAGAGCTTGGAAGTCTTTGAAATGGACTGAGAAAGTGAGTTTAGTGAGA TCAGTTATTCGTGCGATAGCATCTTCATCTAATATTTCTTCAAATGAACTTGAGGAAGCTAGGTCAGATGGTGGTAAATT TCAGCTTTATGAGCAACTGAGTTTTTCATATCCATCACTATTGCCGCCTCTTATACACGAAAGAGATATTTATCTTGCAT GGTCTCTGAAGCGGAGCAAAGCTGTGAATAACTGTAAAAGTGTAGTTGGTGTCATTGGAAAAGGCCACATGAATGGTGTT GTATATGGACTGGTATCTGATACAGGGAGTTTGAGGTTTCGAGACCTTGCAGGGAAAAATTCAGATGATGGGGGCTGGAT TGATGGCCTAGTCAAGAGTTTAGTGAGGGACACCATCATCGGCATCATCTTATGGGCCTTATACGAATTCATAAACGGCA GAACATAA
Protein sequence (LotjaGi5g1v0304600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSIIKSPFPVFMTNPFSLSARPLSRPFKVSIKPPPPGFDYRLEIFEESRAAIAASHPELLDLADNGSLVLVQKKRFGPV PSWRTEFVEPESIWLVGTTHVSKESAFEVERVVKAVRPDNVVVELCRSRAGIMYATADDELGKQLRSNMFSLSGTGFFGA VGRSINLGGQTALALRLLLAAFSSKISSDINRPFGDEFRAARKASEEVGAQIVLGDRPIEITLQRAWKSLKWTEKVSLVR SVIRAIASSSNISSNELEEARSDGGKFQLYEQLSFSYPSLLPPLIHERDIYLAWSLKRSKAVNNCKSVVGVIGKGHMNGV VYGLVSDTGSLRFRDLAGKNSDDGGWIDGLVKSLVRDTIIGIILWALYEFINGRT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 6 | 372 | 367 | 5.8E-189 | – | |
PANTHER | 6 | 372 | 367 | 5.8E-189 | – | |
Pfam | 83 | 320 | 238 | 2.4E-24 | ||
CDD | 93 | 321 | 229 | 2.88002E-55 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0304600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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