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LotjaGi5g1v0304800.1

Overview

Field	Value
Gene ID	LotjaGi5g1v0304800
Transcript ID	LotjaGi5g1v0304800.1
Lotus japonicus genome version	Gifu v1.2
Description	Dehydration-responsive element binding factor protein; TAIR: AT5G52020.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp\|Q9FJ90\|ERF25_ARATH Ethylene-responsive transcription factor ERF025; TrEMBL-Plants: tr\|I1LDV3\|I1LDV3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0304800
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr5:62296210..62298043) extracted from Lotus japonicus Gifu genome v1.2.

CCTTAACTTTGATGCCTCCCACTAATCTCAATCACACTCACACACACAAACACTGTTTCTTTTCCTCTCTTTCTCTTTTT CACTCTCAGAGCCCTTAATCACCACTAACATAGCTAGCTAATCCCAACAACATTCATTCATTCATTCATTCTATGTGCCA CATCTACATGGATAGCATTGGCAACAACCCTCCCTCTCCCCCTCAACCTCCACCTCCTATACAACTCCCATCTGTAAACA CTCGTTTCTCCTCCTCCTCCTCAGTACCAACCACACCCTCATCTCCGTCACCGGGTGCTTTCCGCTACCGGGGAACCCGT TCCCGGAGCGGAAAGTGGGTGTCGGAGATAAGGGAGCCACTTAAAGCAAAGCGCATTTGGCTGGGCACATACCCCACGCC AGAAATGGCAGCCGCCGCGTACGATGTGGCTGCCCTTGCTTTAAAAGGACCAGACACCCCTCTCAACTTCCCCAATTCCA TCCTCTCCTACCCCATTCCAGCTTCCTTGTCCGGAAAGGATATCCGTGCCGCCGCAGAAGCCGCCGCACACGCCAGGCTC GTGAACCAAACCACTGAGAGTCAACAACAGTTACAACAACAACAGCAAAACCCTTGCTCAAATTATCCTGTTGAGGGTTC TTCTTCGAGCGGTGGACAACTTACAAGTGGTGGTGGTTGTGAGCAGCAGTATATTGATGAGGATGAACTTCTGAACATGC CGAATCTGCTGGATGATATGGCGCGTGGAATGCAGGTTAGTCCACCCAGGATGACTTCCTATTCTTCTGAAGATTCACCT CCGAATTCTGATCAAGGAGATAACCTTTGGAGTTATAGATTTTGAGAAGCCCACGTTAGTTAATTTGTTGTTGATTTTGA TTTGATTTTCAGTGTGTTTGTACGGCTTTTTTTGCCCTCTTTTACAGTAGGCACCACTGCTACTGTGTCTTCCATTGAAG GTTTGGGTTGCTCTTTCTGGTGTAATATAGTGTATAGGACCGTTAATTCAAGGTCACTATCATGTTGATGACACAGATTT TAGTGATTGATCTCTTGATCTGATGAAATCCGTAGTTCAGTTTGGGGCTCCTAGCTAGTACCTACATATGATTTCCTTTC CTTCCCTTGTAAACTCCTTTCTTGTACTTTTGGTCATTGGCATGTCCTCTCTATCAACATCTTTGATTATTCTGGATGTG GGTTTTTGCCCCTTTCTTTGTATTTTGCGGCTGATTTGTGTTCAATTAGTCGTTTGTTTAAGCTGGAAGTTGTAGATGTT TGTAGAAGCTAGCTAGTTTGAGGATGTTTCATATGTGTAAGCTCTTTTGTACATGATGGATGATCCTAAAAAAAATGGAA CCTGTGTTATGTTTATGATATGATCAGTACAAGTTTCCAGATATTTCATGTTTCAAGAATGGCCATATAAGTAAAAGTGA TCGGTGCATCTTCTTATCTCTTGAACTATAAATTACAACTTAATTACATGATTTTTGTGCTTATGGGAGTATTAGCTAGG CATGGTTGAGTTACTTCAGTTTGTTAAAACAAATTGTTAGTTAGTTATACATTTGCAGTTTTAACTAACTAACAATTAGT TTGTTAAAACTGAACTTACTAATATGAGTAACTGAACTAACTAATATTAGTTAGTATGACTTAAGGTTCATCAAATCAAA CCATATATAAGAATGACCAGCATCAGCATGTTATAAGTTAGGAAATGGTTGATTCCAAACCAACTGACCTCTTTGAATGC TTCTCTATTATTTGATCAGAAGAGTTAATGATAGTACATGCTCTCCTTTTTCTTGGCTTTAAATGAAACCTGAA

Download Genomic Sequence

CDS sequence (LotjaGi5g1v0304800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTGCCACATCTACATGGATAGCATTGGCAACAACCCTCCCTCTCCCCCTCAACCTCCACCTCCTATACAACTCCCATC TGTAAACACTCGTTTCTCCTCCTCCTCCTCAGTACCAACCACACCCTCATCTCCGTCACCGGGTGCTTTCCGCTACCGGG GAACCCGTTCCCGGAGCGGAAAGTGGGTGTCGGAGATAAGGGAGCCACTTAAAGCAAAGCGCATTTGGCTGGGCACATAC CCCACGCCAGAAATGGCAGCCGCCGCGTACGATGTGGCTGCCCTTGCTTTAAAAGGACCAGACACCCCTCTCAACTTCCC CAATTCCATCCTCTCCTACCCCATTCCAGCTTCCTTGTCCGGAAAGGATATCCGTGCCGCCGCAGAAGCCGCCGCACACG CCAGGCTCGTGAACCAAACCACTGAGAGTCAACAACAGTTACAACAACAACAGCAAAACCCTTGCTCAAATTATCCTGTT GAGGGTTCTTCTTCGAGCGGTGGACAACTTACAAGTGGTGGTGGTTGTGAGCAGCAGTATATTGATGAGGATGAACTTCT GAACATGCCGAATCTGCTGGATGATATGGCGCGTGGAATGCAGGTTAGTCCACCCAGGATGACTTCCTATTCTTCTGAAG ATTCACCTCCGAATTCTGATCAAGGAGATAACCTTTGGAGTTATAGATTTTGA

Download CDS Sequence

Protein sequence (LotjaGi5g1v0304800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MCHIYMDSIGNNPPSPPQPPPPIQLPSVNTRFSSSSSVPTTPSSPSPGAFRYRGTRSRSGKWVSEIREPLKAKRIWLGTY PTPEMAAAAYDVAALALKGPDTPLNFPNSILSYPIPASLSGKDIRAAAEAAAHARLVNQTTESQQQLQQQQQNPCSNYPV EGSSSSGGQLTSGGGCEQQYIDEDELLNMPNLLDDMARGMQVSPPRMTSYSSEDSPPNSDQGDNLWSYRF

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	58	58	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	12	26	15	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	27	50	24	-	–
PANTHER	PTHR31985 View details on PTHR31985 Search for proteins/transripts with this domain View external data on PTHR31985	39	227	189	2.2E-74	–
PANTHER	PTHR31985:SF126 View details on PTHR31985:SF126 Search for proteins/transripts with this domain View external data on PTHR31985:SF126	39	227	189	2.2E-74	–
SMART	SM00380 View details on SM00380 Search for proteins/transripts with this domain View external data on SM00380	51	113	63	2.6E-26	IPR001471 Show description in modal box View details on IPR001471 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51032 View details on PS51032 Search for proteins/transripts with this domain View external data on PS51032	51	107	57	20.02	IPR001471 Show description in modal box View details on IPR001471 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd00018 View details on cd00018 Search for proteins/transripts with this domain View external data on cd00018	51	109	59	5.74725E-16	IPR001471 Show description in modal box View details on IPR001471 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.30.730.10 View details on G3DSA:3.30.730.10 Search for proteins/transripts with this domain View external data on G3DSA:3.30.730.10	51	110	60	1.6E-23	IPR036955 Show description in modal box View details on IPR036955 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF54171 View details on SSF54171 Search for proteins/transripts with this domain View external data on SSF54171	52	109	58	1.37E-17	IPR016177 Show description in modal box View details on IPR016177 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00847 View details on PF00847 Search for proteins/transripts with this domain View external data on PF00847	56	99	44	8.2E-8	IPR001471 Show description in modal box View details on IPR001471 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	133	153	21	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	137	230	94	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	137	176	40	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	204	230	27	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003677 View details of GO:0003677 AmiGO InterPro QuickGO	Molecular function	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).	Subterm of View details of GO:0003676
GO:0003700 View details of GO:0003700 AmiGO InterPro QuickGO	Molecular function	DNA-binding transcription factor activity	A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.	Subterm of View details of GO:0140110
GO:0006355 View details of GO:0006355 AmiGO InterPro QuickGO	Biological process	Regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.	Subterm of View details of GO:0010468 View details of GO:1903506 View details of GO:2000112 Regulates View details of GO:0006351

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0304800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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